ARL6IP5: Difference between revisions

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<!-- The PBB_Controls template provides controls for Protein Box Bot, please see Template:PBB_Controls for details. -->
{{Infobox_gene}}
{{PBB_Controls
'''PRA1 family protein 3''' is a [[protein]] that in humans is encoded by the ''ARL6IP5'' [[gene]].<ref name="pmid11242046">{{cite journal | vauthors = Lin CI, Orlov I, Ruggiero AM, Dykes-Hoberg M, Lee A, Jackson M, Rothstein JD | title = Modulation of the neuronal glutamate transporter EAAC1 by the interacting protein GTRAP3-18 | journal = Nature | volume = 410 | issue = 6824 | pages = 84–8 |date=Mar 2001 | pmid = 11242046 | pmc =  | doi = 10.1038/35065084 }}</ref><ref name="pmid11042152">{{cite journal | vauthors = Zhang QH, Ye M, Wu XY, Ren SX, Zhao M, Zhao CJ, Fu G, Shen Y, Fan HY, Lu G, Zhong M, Xu XR, Han ZG, Zhang JW, Tao J, Huang QH, Zhou J, Hu GX, Gu J, Chen SJ, Chen Z | title = Cloning and functional analysis of cDNAs with open reading frames for 300 previously undefined genes expressed in CD34+ hematopoietic stem/progenitor cells | journal = Genome Res | volume = 10 | issue = 10 | pages = 1546–60 |date=Nov 2000 | pmid = 11042152 | pmc = 310934 | doi =10.1101/gr.140200  }}</ref><ref name="entrez">{{cite web | title = Entrez Gene: ARL6IP5 ADP-ribosylation-like factor 6 interacting protein 5| url = https://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=10550| accessdate = }}</ref>
| update_page = yes
| require_manual_inspection = no
| update_protein_box = yes
| update_summary = yes
| update_citations = yes
}}


<!-- The GNF_Protein_box is automatically maintained by Protein Box Bot.  See Template:PBB_Controls to Stop updates. -->
== Function ==
{{GNF_Protein_box
| image =
| image_source =
| PDB =
| Name = ADP-ribosylation-like factor 6 interacting protein 5
| HGNCid = 16937
| Symbol = ARL6IP5
| AltSymbols =; DERP11; GTRAP3-18; HSPC127; JWA; PRAF3; addicsin; hp22; jmx
| OMIM = 605709
| ECnumber = 
| Homologene = 4673
| MGIid = 1929501
| GeneAtlas_image1 = PBB_GE_ARL6IP5_200761_s_at_tn.png
| GeneAtlas_image2 = PBB_GE_ARL6IP5_200760_s_at_tn.png
| Function = {{GNF_GO|id=GO:0005515 |text = protein binding}}
| Component = {{GNF_GO|id=GO:0005783 |text = endoplasmic reticulum}} {{GNF_GO|id=GO:0016020 |text = membrane}} {{GNF_GO|id=GO:0016021 |text = integral to membrane}}
| Process = {{GNF_GO|id=GO:0015813 |text = glutamate transport}}
| Orthologs = {{GNF_Ortholog_box
    | Hs_EntrezGene = 10550
    | Hs_Ensembl = ENSG00000144746
    | Hs_RefseqProtein = NP_006398
    | Hs_RefseqmRNA = NM_006407
    | Hs_GenLoc_db = 
    | Hs_GenLoc_chr = 3
    | Hs_GenLoc_start = 69216780
    | Hs_GenLoc_end = 69237927
    | Hs_Uniprot = O75915
    | Mm_EntrezGene = 65106
    | Mm_Ensembl = ENSMUSG00000035199
    | Mm_RefseqmRNA = NM_022992
    | Mm_RefseqProtein = NP_075368
    | Mm_GenLoc_db = 
    | Mm_GenLoc_chr = 6
    | Mm_GenLoc_start = 97176258
    | Mm_GenLoc_end = 97198837
    | Mm_Uniprot = Q8R5J9
  }}
}}
'''ADP-ribosylation-like factor 6 interacting protein 5''', also known as '''ARL6IP5''', is a human [[gene]].<ref name="entrez">{{cite web | title = Entrez Gene: ARL6IP5 ADP-ribosylation-like factor 6 interacting protein 5| url = http://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=10550| accessdate = }}</ref>


<!-- The PBB_Summary template is automatically maintained by Protein Box Bot.  See Template:PBB_Controls to Stop updates. -->
Expression of this gene is affected by [[vitamin A]]. The encoded protein of this gene may be associated with the [[cytoskeleton]]. A similar protein in rats may play a role in the regulation of cell differentiation. The rat protein binds and inhibits the cell membrane glutamate transporter [[EAAC1]]. The expression of the rat gene is upregulated by retinoic acid, which results in a specific reduction in EAAC1-mediated glutamate transport.<ref name="entrez" /> The disruption of the mouse gene results in increased neuronal glutathione content, neuroprotection against oxidative stress and a better performance in motor/spatial learning and memory tests than wild-type mice.
{{PBB_Summary
 
| section_title =
== Interactions ==
| summary_text = Expression of this gene is affected by vitamin A. The encoded protein of this gene may be associated with the cytoskeleton. A similar protein in rats may play a role in the regulation of cell differentiation. The rat protein binds and inhibits the cell membrane glutamate transporter EAAC1. The expression of the rat gene is upregulated by retinoic acid, which results in a specific reduction in EAAC1-mediated glutamate transport.<ref name="entrez">{{cite web | title = Entrez Gene: ARL6IP5 ADP-ribosylation-like factor 6 interacting protein 5| url = http://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=10550| accessdate = }}</ref>
 
}}
ARL6IP5 has been shown to [[Protein-protein interaction|interact]] with [[SLC1A1]].<ref name="pmid11242046" />


==References==
==References==
{{reflist|2}}
{{reflist}}
 
==External links==
* {{UCSC gene info|ARL6IP5}}
 
==Further reading==
==Further reading==
{{refbegin | 2}}
{{refbegin | 2}}
{{PBB_Further_reading
*{{cite journal  | vauthors=Maruyama K, Sugano S |title=Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides. |journal=Gene |volume=138 |issue= 1-2 |pages= 171–4 |year= 1994 |pmid= 8125298 |doi=10.1016/0378-1119(94)90802-8 }}
| citations =
*{{cite journal  | vauthors=Suzuki Y, Yoshitomo-Nakagawa K, Maruyama K |title=Construction and characterization of a full length-enriched and a 5'-end-enriched cDNA library. |journal=Gene |volume=200 |issue= 1-2 |pages= 149–56 |year= 1997 |pmid= 9373149 |doi=10.1016/S0378-1119(97)00411-3  |display-authors=etal}}
*{{cite journal  | author=Maruyama K, Sugano S |title=Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides. |journal=Gene |volume=138 |issue= 1-2 |pages= 171-4 |year= 1994 |pmid= 8125298 |doi=  }}
*{{cite journal  | vauthors=Ingley E, Williams JH, Walker CE |title=A novel ADP-ribosylation like factor (ARL-6), interacts with the protein-conducting channel SEC61beta subunit. |journal=FEBS Lett. |volume=459 |issue= 1 |pages= 69–74 |year= 1999 |pmid= 10508919 |doi=10.1016/S0014-5793(99)01188-6  |display-authors=etal}}
*{{cite journal  | author=Suzuki Y, Yoshitomo-Nakagawa K, Maruyama K, ''et al.'' |title=Construction and characterization of a full length-enriched and a 5'-end-enriched cDNA library. |journal=Gene |volume=200 |issue= 1-2 |pages= 149-56 |year= 1997 |pmid= 9373149 |doi= }}
*{{cite journal  | vauthors=Butchbach ME, Lai L, Lin CL |title=Molecular cloning, gene structure, expression profile and functional characterization of the mouse glutamate transporter (EAAT3) interacting protein GTRAP3-18. |journal=Gene |volume=292 |issue= 1-2 |pages= 81–90 |year= 2002 |pmid= 12119102 |doi=10.1016/S0378-1119(02)00669-8  }}
*{{cite journal  | author=Ingley E, Williams JH, Walker CE, ''et al.'' |title=A novel ADP-ribosylation like factor (ARL-6), interacts with the protein-conducting channel SEC61beta subunit. |journal=FEBS Lett. |volume=459 |issue= 1 |pages= 69-74 |year= 1999 |pmid= 10508919 |doi= }}
*{{cite journal  | vauthors=Ikemoto MJ, Inoue K, Akiduki S |title=Identification of addicsin/GTRAP3-18 as a chronic morphine-augmented gene in amygdala. |journal=NeuroReport |volume=13 |issue= 16 |pages= 2079–84 |year= 2003 |pmid= 12438930 |doi=10.1097/00001756-200211150-00018  |display-authors=etal}}
*{{cite journal  | author=Zhang QH, Ye M, Wu XY, ''et al.'' |title=Cloning and functional analysis of cDNAs with open reading frames for 300 previously undefined genes expressed in CD34+ hematopoietic stem/progenitor cells. |journal=Genome Res. |volume=10 |issue= 10 |pages= 1546-60 |year= 2001 |pmid= 11042152 |doi= }}
*{{cite journal  | vauthors=Strausberg RL, Feingold EA, Grouse LH |title=Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. |journal=Proc. Natl. Acad. Sci. U.S.A. |volume=99 |issue= 26 |pages= 16899–903 |year= 2003 |pmid= 12477932 |doi= 10.1073/pnas.242603899 | pmc=139241 |display-authors=etal}}
*{{cite journal  | author=Lin CI, Orlov I, Ruggiero AM, ''et al.'' |title=Modulation of the neuronal glutamate transporter EAAC1 by the interacting protein GTRAP3-18. |journal=Nature |volume=410 |issue= 6824 |pages= 84-8 |year= 2001 |pmid= 11242046 |doi= 10.1038/35065084 }}
*{{cite journal  | vauthors=Butchbach ME, Guo H, Lin CL |title=Methyl-beta-cyclodextrin but not retinoic acid reduces EAAT3-mediated glutamate uptake and increases GTRAP3-18 expression. |journal=J. Neurochem. |volume=84 |issue= 4 |pages= 891–4 |year= 2003 |pmid= 12562531 |doi=10.1046/j.1471-4159.2003.01588.x  }}
*{{cite journal  | author=Butchbach ME, Lai L, Lin CL |title=Molecular cloning, gene structure, expression profile and functional characterization of the mouse glutamate transporter (EAAT3) interacting protein GTRAP3-18. |journal=Gene |volume=292 |issue= 1-2 |pages= 81-90 |year= 2002 |pmid= 12119102 |doi=  }}
*{{cite journal  | vauthors=Gevaert K, Goethals M, Martens L |title=Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides. |journal=Nat. Biotechnol. |volume=21 |issue= 5 |pages= 566–9 |year= 2004 |pmid= 12665801 |doi= 10.1038/nbt810 |display-authors=etal}}
*{{cite journal  | author=Ikemoto MJ, Inoue K, Akiduki S, ''et al.'' |title=Identification of addicsin/GTRAP3-18 as a chronic morphine-augmented gene in amygdala. |journal=Neuroreport |volume=13 |issue= 16 |pages= 2079-84 |year= 2003 |pmid= 12438930 |doi= }}
*{{cite journal  | vauthors=Matsuda A, Suzuki Y, Honda G |title=Large-scale identification and characterization of human genes that activate NF-kappaB and MAPK signaling pathways. |journal=Oncogene |volume=22 |issue= 21 |pages= 3307–18 |year= 2003 |pmid= 12761501 |doi= 10.1038/sj.onc.1206406 |display-authors=etal}}
*{{cite journal  | author=Strausberg RL, Feingold EA, Grouse LH, ''et al.'' |title=Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. |journal=Proc. Natl. Acad. Sci. U.S.A. |volume=99 |issue= 26 |pages= 16899-903 |year= 2003 |pmid= 12477932 |doi= 10.1073/pnas.242603899 }}
*{{cite journal  | vauthors=Mao WG, Li AP, Ye J |title=[Effect of differentiation inducer and heat stress on the expression of JWA protein and Hsp70 of K562 cells] |journal=Zhonghua Lao Dong Wei Sheng Zhi Ye Bing Za Zhi |volume=21 |issue= 4 |pages= 253–6 |year= 2004 |pmid= 14761432 |doi= |display-authors=etal}}
*{{cite journal  | author=Butchbach ME, Guo H, Lin CL |title=Methyl-beta-cyclodextrin but not retinoic acid reduces EAAT3-mediated glutamate uptake and increases GTRAP3-18 expression. |journal=J. Neurochem. |volume=84 |issue= 4 |pages= 891-4 |year= 2003 |pmid= 12562531 |doi= }}
*{{cite journal  | vauthors=Gerhard DS, Wagner L, Feingold EA |title=The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). |journal=Genome Res. |volume=14 |issue= 10B |pages= 2121–7 |year= 2004 |pmid= 15489334 |doi= 10.1101/gr.2596504  | pmc=528928 |display-authors=etal}}
*{{cite journal  | author=Gevaert K, Goethals M, Martens L, ''et al.'' |title=Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides. |journal=Nat. Biotechnol. |volume=21 |issue= 5 |pages= 566-9 |year= 2004 |pmid= 12665801 |doi= 10.1038/nbt810 }}
*{{cite journal  | vauthors=Schweneker M, Bachmann AS, Moelling K |title=JM4 is a four-transmembrane protein binding to the CCR5 receptor. |journal=FEBS Lett. |volume=579 |issue= 7 |pages= 1751–8 |year= 2005 |pmid= 15757671 |doi= 10.1016/j.febslet.2005.02.037 }}
*{{cite journal  | author=Matsuda A, Suzuki Y, Honda G, ''et al.'' |title=Large-scale identification and characterization of human genes that activate NF-kappaB and MAPK signaling pathways. |journal=Oncogene |volume=22 |issue= 21 |pages= 3307-18 |year= 2003 |pmid= 12761501 |doi= 10.1038/sj.onc.1206406 }}
*{{cite journal  | vauthors=Zhu T, Chen R, Li AP |title=Regulation of a novel cell differentiation-associated gene, JWA during oxidative damage in K562 and MCF-7 cells. |journal=J. Biomed. Sci. |volume=12 |issue= 1 |pages= 219–27 |year= 2005 |pmid= 15864752 |doi= 10.1007/s11373-004-8186-4 |display-authors=etal}}
*{{cite journal  | author=Mao WG, Li AP, Ye J, ''et al.'' |title=[Effect of differentiation inducer and heat stress on the expression of JWA protein and Hsp70 of K562 cells] |journal=Zhonghua Lao Dong Wei Sheng Zhi Ye Bing Za Zhi |volume=21 |issue= 4 |pages= 253-6 |year= 2004 |pmid= 14761432 |doi= }}
*{{cite journal  | vauthors=Rual JF, Venkatesan K, Hao T |title=Towards a proteome-scale map of the human protein-protein interaction network. |journal=Nature |volume=437 |issue= 7062 |pages= 1173–8 |year= 2005 |pmid= 16189514 |doi= 10.1038/nature04209 |display-authors=etal}}
*{{cite journal  | author=Gerhard DS, Wagner L, Feingold EA, ''et al.'' |title=The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). |journal=Genome Res. |volume=14 |issue= 10B |pages= 2121-7 |year= 2004 |pmid= 15489334 |doi= 10.1101/gr.2596504 }}
*{{cite journal  | vauthors=Otsuki T, Ota T, Nishikawa T |title=Signal sequence and keyword trap in silico for selection of full-length human cDNAs encoding secretion or membrane proteins from oligo-capped cDNA libraries. |journal=DNA Res. |volume=12 |issue= 2 |pages= 117–26 |year= 2007 |pmid= 16303743 |doi= 10.1093/dnares/12.2.117 |display-authors=etal}}
*{{cite journal  | author=Schweneker M, Bachmann AS, Moelling K |title=JM4 is a four-transmembrane protein binding to the CCR5 receptor. |journal=FEBS Lett. |volume=579 |issue= 7 |pages= 1751-8 |year= 2005 |pmid= 15757671 |doi= 10.1016/j.febslet.2005.02.037 }}
*{{cite journal  | vauthors=Huang S, Shen Q, Mao WG |title=JWA, a novel signaling molecule, involved in the induction of differentiation of human myeloid leukemia cells. |journal=Biochem. Biophys. Res. Commun. |volume=341 |issue= 2 |pages= 440–50 |year= 2006 |pmid= 16430862 |doi= 10.1016/j.bbrc.2005.12.197 |display-authors=etal}}
*{{cite journal  | author=Zhu T, Chen R, Li AP, ''et al.'' |title=Regulation of a novel cell differentiation-associated gene, JWA during oxidative damage in K562 and MCF-7 cells. |journal=J. Biomed. Sci. |volume=12 |issue= 1 |pages= 219-27 |year= 2005 |pmid= 15864752 |doi= 10.1007/s11373-004-8186-4 }}
*{{cite journal  | vauthors=Huang S, Shen Q, Mao WG |title=JWA, a novel signaling molecule, involved in all-trans retinoic acid induced differentiation of HL-60 cells. |journal=J. Biomed. Sci. |volume=13 |issue= 3 |pages= 357–71 |year= 2006 |pmid= 16468075 |doi= 10.1007/s11373-005-9068-0 |display-authors=etal}}
*{{cite journal  | author=Rual JF, Venkatesan K, Hao T, ''et al.'' |title=Towards a proteome-scale map of the human protein-protein interaction network. |journal=Nature |volume=437 |issue= 7062 |pages= 1173-8 |year= 2005 |pmid= 16189514 |doi= 10.1038/nature04209 }}
*{{cite journal  | vauthors=Fo CS, Coleman CS, Wallick CJ |title=Genomic organization, expression profile, and characterization of the new protein PRA1 domain family, member 2 (PRAF2). |journal=Gene |volume=371 |issue= 1 |pages= 154–65 |year= 2006 |pmid= 16481131 |doi= 10.1016/j.gene.2005.12.009 |display-authors=etal}}
*{{cite journal  | author=Otsuki T, Ota T, Nishikawa T, ''et al.'' |title=Signal sequence and keyword trap in silico for selection of full-length human cDNAs encoding secretion or membrane proteins from oligo-capped cDNA libraries. |journal=DNA Res. |volume=12 |issue= 2 |pages= 117-26 |year= 2007 |pmid= 16303743 |doi= 10.1093/dnares/12.2.117 }}
*{{cite journal  | vauthors=Aoyama K, Wang F, Matsumura N |title=Increased neuronal glutathione and neuroprotection in GTRAP3-18-deficient mice. |journal=Neurobiol Dis |volume=45 |issue= 3 |pages= 973–82 |year= 2012 |pmid= 22210510 |doi= 10.1016/j.nbd.2011.12.016 |display-authors=etal}}
*{{cite journal  | author=Huang S, Shen Q, Mao WG, ''et al.'' |title=JWA, a novel signaling molecule, involved in the induction of differentiation of human myeloid leukemia cells. |journal=Biochem. Biophys. Res. Commun. |volume=341 |issue= 2 |pages= 440-50 |year= 2006 |pmid= 16430862 |doi= 10.1016/j.bbrc.2005.12.197 }}
*{{cite journal  | author=Huang S, Shen Q, Mao WG, ''et al.'' |title=JWA, a novel signaling molecule, involved in all-trans retinoic acid induced differentiation of HL-60 cells. |journal=J. Biomed. Sci. |volume=13 |issue= 3 |pages= 357-71 |year= 2006 |pmid= 16468075 |doi= 10.1007/s11373-005-9068-0 }}
*{{cite journal  | author=Fo CS, Coleman CS, Wallick CJ, ''et al.'' |title=Genomic organization, expression profile, and characterization of the new protein PRA1 domain family, member 2 (PRAF2). |journal=Gene |volume=371 |issue= 1 |pages= 154-65 |year= 2006 |pmid= 16481131 |doi= 10.1016/j.gene.2005.12.009 }}
}}
{{refend}}
{{refend}}


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Latest revision as of 18:15, 29 August 2017

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Identifiers
Aliases
External IDsGeneCards: [1]
Orthologs
SpeciesHumanMouse
Entrez

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Ensembl

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UniProt

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RefSeq (mRNA)

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RefSeq (protein)

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Location (UCSC)n/an/a
PubMed searchn/an/a
Wikidata
View/Edit Human

PRA1 family protein 3 is a protein that in humans is encoded by the ARL6IP5 gene.[1][2][3]

Function

Expression of this gene is affected by vitamin A. The encoded protein of this gene may be associated with the cytoskeleton. A similar protein in rats may play a role in the regulation of cell differentiation. The rat protein binds and inhibits the cell membrane glutamate transporter EAAC1. The expression of the rat gene is upregulated by retinoic acid, which results in a specific reduction in EAAC1-mediated glutamate transport.[3] The disruption of the mouse gene results in increased neuronal glutathione content, neuroprotection against oxidative stress and a better performance in motor/spatial learning and memory tests than wild-type mice.

Interactions

ARL6IP5 has been shown to interact with SLC1A1.[1]

References

  1. ↑ 1.0 1.1 Lin CI, Orlov I, Ruggiero AM, Dykes-Hoberg M, Lee A, Jackson M, Rothstein JD (Mar 2001). "Modulation of the neuronal glutamate transporter EAAC1 by the interacting protein GTRAP3-18". Nature. 410 (6824): 84–8. doi:10.1038/35065084. PMID 11242046.
  2. ↑ Zhang QH, Ye M, Wu XY, Ren SX, Zhao M, Zhao CJ, Fu G, Shen Y, Fan HY, Lu G, Zhong M, Xu XR, Han ZG, Zhang JW, Tao J, Huang QH, Zhou J, Hu GX, Gu J, Chen SJ, Chen Z (Nov 2000). "Cloning and functional analysis of cDNAs with open reading frames for 300 previously undefined genes expressed in CD34+ hematopoietic stem/progenitor cells". Genome Res. 10 (10): 1546–60. doi:10.1101/gr.140200. PMC 310934. PMID 11042152.
  3. ↑ 3.0 3.1 "Entrez Gene: ARL6IP5 ADP-ribosylation-like factor 6 interacting protein 5".

External links

Further reading


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