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===Encephalitis===
===Encephalitis===
* '''Empiric antimicrobial therapy'''<ref>{{Cite journal| doi = 10.1086/589747| issn = 1537-6591| volume = 47| issue = 3| pages = 303–327| last1 = Tunkel| first1 = Allan R.| last2 = Glaser| first2 = Carol A.| last3 = Bloch| first3 = Karen C.| last4 = Sejvar| first4 = James J.| last5 = Marra| first5 = Christina M.| last6 = Roos| first6 = Karen L.| last7 = Hartman| first7 = Barry J.| last8 = Kaplan| first8 = Sheldon L.| last9 = Scheld| first9 = W. Michael| last10 = Whitley| first10 = Richard J.| last11 = Infectious Diseases Society of America| title = The management of encephalitis: clinical practice guidelines by the Infectious Diseases Society of America| journal = Clinical Infectious Diseases: An Official Publication of the Infectious Diseases Society of America| date = 2008-08-01| pmid = 18582201}}</ref>
:* Preferred regimen: [[Acyclovir]] 10 mg/kg IV q8h for 14–21 days
:: Note (1): Acyclovir should be initiated in all patients with suspected encephalitis, pending results of diagnostic studies.
:: Note (2): Other empiric antimicrobial agents should be administered on the basis of specific epidemiologic or clinical clues.
* '''Specific epidemiologic considerations'''<ref>{{Cite journal| doi = 10.1086/589747| issn = 1537-6591| volume = 47| issue = 3| pages = 303–327| last1 = Tunkel| first1 = Allan R.| last2 = Glaser| first2 = Carol A.| last3 = Bloch| first3 = Karen C.| last4 = Sejvar| first4 = James J.| last5 = Marra| first5 = Christina M.| last6 = Roos| first6 = Karen L.| last7 = Hartman| first7 = Barry J.| last8 = Kaplan| first8 = Sheldon L.| last9 = Scheld| first9 = W. Michael| last10 = Whitley| first10 = Richard J.| last11 = Infectious Diseases Society of America| title = The management of encephalitis: clinical practice guidelines by the Infectious Diseases Society of America| journal = Clinical Infectious Diseases: An Official Publication of the Infectious Diseases Society of America| date = 2008-08-01| pmid = 18582201}}</ref>
:* Agammaglobulinemia — Enteroviruses, Mycoplasma pneumoniae
:* Age
::* Neonates — Herpes simplex virus type 2, cytomegalovirus, rubella virus, Listeria monocytogenes, Treponema pallidum, Toxoplasma gondii
::* Infants and children — Eastern equine encephalitis virus, Japanese encephalitis virus, Murray Valley encephalitis virus, influenza virus, La Crosse virus
::* Elderly persons — Eastern equine encephalitis virus, St. Louis encephalitis virus, West Nile virus, sporadic CJD, L. monocytogenes
:* Animal contact
::* Bats — Rabies virus, Nipah virus
::* Birds — West Nile virus, Eastern equine encephalitis virus, Western equine encephalitis virus, Venezuelan equine encephalitis virus, St. Louis encephalitis virus, Murray Valley encephalitis virus, Japanese encephalitis virus, Cryptococcus neoformans (bird droppings)
::* Cats — Rabies virus, Coxiella burnetii, Bartonella henselae, T. gondii
::* Dogs — Rabies virus
::* Horses — Eastern equine encephalitis virus, Western equine encephalitis virus, Venezuelan equine encephalitis virus, Hendra virus
::* Old World primates — B virus
::* Raccoons — Rabies virus, Baylisascaris procyonis
::* Rodents — Eastern equine encephalitis virus (South America), Venezuelan equine encephalitis virus, tickborne encephalitis virus, Powassan virus (woodchucks), La Crosse virus (chipmunks and squirrels), Bartonella quintana
::* Sheep and goats — C. burnetii
::* Skunks — Rabies virus
::* Swine — Japanese encephalitis virus, Nipah virus
::* White-tailed deer — Borrelia burgdorferi
:* Immunocompromised persons — Varicella zoster virus, cytomegalovirus, human herpesvirus 6, West Nile virus, HIV, JC virus, L. monocytogenes, Mycobacterium tuberculosis, C. neoformans, Coccidioides species, Histoplasma capsulatum, T. gondii
:* Ingestion
::* Raw or partially cooked meat — T. gondii
::* Raw meat, fish, or reptiles — Gnanthostoma species
::* Unpasteurized milk — Tickborne encephalitis virus, L. monocytogenes, C. burnetii
:* Insect contact
::* Mosquitoes — Eastern equine encephalitis virus, Western equine encephalitis virus, Venezuelan equine encephalitis virus, St. Louis encephalitis virus, Murray Valley encephalitis virus, Japanese encephalitis virus, West Nile virus, La Crosse virus, Plasmodium falciparum
::* Sandflies — Bartonella bacilliformis
::* Ticks — Tickborne encephalitis virus, Powassan virus, Rickettsia rickettsii, Ehrlichia chaffeensis, Anaplasma phagocytophilum, C. burnetii (rare), B. burgdorferi
::* Tsetse flies — Trypanosoma brucei gambiense, Trypanosoma brucei rhodesiense
:* Occupation
::* Exposure to animals — Rabies virus, C. burnetii, Bartonella species
::* Exposure to horses — Hendra virus
::* Exposure to Old World primates — B virus
::* Laboratory workers — West Nile virus, HIV, C. burnetii, Coccidioides species
::* Physicians and health care workers — Varicella zoster virus, HIV, influenza virus, measles virus, M. tuberculosis
::* Veterinarians — Rabies virus, Bartonella species, C. burnetii
:* Person-to-person transmission — Herpes simplex virus (neonatal), varicella zoster virus, Venezuelan equine encephalitis virus (rare), poliovirus, nonpolio enteroviruses, measles virus, Nipah virus, mumps virus, rubella virus, Epstein-Barr virus, human herpesvirus 6, B virus, West Nile virus (transfusion, transplantation, breast feeding), HIV, rabies virus (transplantation), influenza virus, M. pneumoniae, M. tuberculosis, T. pallidum
:* Recent vaccination — Acute disseminated encephalomyelitis
:* Recreational activities
::* Camping/hunting — Agents transmitted by mosquitoes and ticks
::* Sexual contact — HIV, T. pallidum
::* Spelunking — Rabies virus, H. capsulatum
::* Swimming — Enteroviruses, Naegleria fowleri
:* Season
::* Late summer/early fall — Agents transmitted by mosquitoes and ticks, enteroviruses
::* Winter — Influenza virus
:* Transfusion and transplantation — Cytomegalovirus, Epstein-Barr virus, West Nile virus, HIV, tickborne encephalitis virus, rabies virus, iatrogenic CJD, T. pallidum, A. phagocytophilum, R. rickettsii, C. neoformans, Coccidioides species, H. capsulatum, T. gondii
:* Travel
::* Africa — Rabies virus, West Nile virus, P. falciparum, T. brucei gambiense, T. brucei rhodesiense
::* Australia — Murray Valley encephalitis virus, Japanese encephalitis virus, Hendra virus
::* Central America — Rabies virus, Eastern equine encephalitis virus, Western equine encephalitis virus, Venezuelan equine encephalitis virus, St. Louis encephalitis virus, R. rickettsii, P. falciparum, Taenia solium
::* Europe — West Nile virus, tickborne encephalitis virus, A. phagocytophilum, B. burgdorferi
::* India, Nepal — Rabies virus, Japanese encephalitis virus, P. falciparum
::* Middle East — West Nile virus, P. falciparum
::* Russia — Tickborne encephalitis virus
::* South America — Rabies virus, Eastern equine encephalitis virus, Western equine encephalitis virus, Venezuelan equine encephalitis virus, St. Louis encephalitis virus, R. rickettsii, B. bacilliformis (Andes mountains), P. falciparum, T. solium
::* Southeast Asia, China, Pacific Rim — Japanese encephalitis virus, tickborne encephalitis virus, Nipah virus, P. falciparum, Gnanthostoma species, T. solium
::* Unvaccinated status — Varicella zoster virus, Japanese encephalitis virus, poliovirus, measles virus, mumps virus, rubella virus
* '''Specific clinical considerations'''<ref>{{Cite journal| doi = 10.1086/589747| issn = 1537-6591| volume = 47| issue = 3| pages = 303–327| last1 = Tunkel| first1 = Allan R.| last2 = Glaser| first2 = Carol A.| last3 = Bloch| first3 = Karen C.| last4 = Sejvar| first4 = James J.| last5 = Marra| first5 = Christina M.| last6 = Roos| first6 = Karen L.| last7 = Hartman| first7 = Barry J.| last8 = Kaplan| first8 = Sheldon L.| last9 = Scheld| first9 = W. Michael| last10 = Whitley| first10 = Richard J.| last11 = Infectious Diseases Society of America| title = The management of encephalitis: clinical practice guidelines by the Infectious Diseases Society of America| journal = Clinical Infectious Diseases: An Official Publication of the Infectious Diseases Society of America| date = 2008-08-01| pmid = 18582201}}</ref>
:* General findings
::* Hepatitis — Coxiella burnetii
::* Lymphadenopathy — HIV, Epstein-Barr virus, cytomegalovirus, measles virus, rubella virus, West Nile virus, Treponema pallidum, Bartonella henselae and other Bartonella species, Mycobacterium tuberculosis, Toxoplasma gondii, Trypanosoma brucei gambiense
::* Parotitis — Mumps virus
::* Rash — Varicella zoster virus, B virus, human herpesvirus 6, West Nile virus, rubella virus, some enteroviruses, HIV, Rickettsia rickettsii, Mycoplasma pneumoniae, Borrelia burgdorferi, T. pallidum, Ehrlichia chaffeensis, Anaplasma phagocytophilum
::* Respiratory tract findings — Venezuelan equine encephalitis virus, Nipah virus, Hendra virus, influenza virus, adenovirus, M. pneumoniae, C. burnetii, M. tuberculosis, Histoplasma capsulatum
::* Retinitis — Cytomegalovirus, West Nile virus, B. henselae, T. pallidum
::* Urinary symptoms — St. Louis encephalitis virus
:* Neurologic findings
::* Cerebellar ataxia — Varicella zoster virus (children), Epstein-Barr virus, mumps virus, St. Louis encephalitis virus, Tropheryma whipplei, T. brucei gambiense
::* Cranial nerve abnormalities — Herpes simplex virus, Epstein-Barr virus, Listeria monocytogenes, M. tuberculosis, T. pallidum, B. burgdorferi, T. whipplei, Cryptococcus neoformans, Coccidioides species, H. capsulatum
::* Dementia — HIV, human transmissible spongiform encephalopathies (sCJD and vCJD), measles virus (SSPE), T. pallidum, T. whipplei
::* Myorhythmia — T. whipplei (oculomasticatory)
::* Parkinsonism — Japanese encephalitis virus, St. Louis encephalitis virus, West Nile virus, Nipah virus, T. gondii, T. brucei gambiense
::* Poliomyelitis-like flaccid paralysis — Japanese encephalitis virus, West Nile virus, tickborne encephalitis virus; enteroviruses (enterovirus-71, coxsackieviruses), poliovirus
::* Rhombencephalitis — Herpes simplex virus, West Nile virus, enterovirus 71, L. monocytogenes


* Pathogen-directed antimicrobial therapy<ref>{{Cite journal| doi = 10.1086/589747| issn = 1537-6591| volume = 47| issue = 3| pages = 303–327| last1 = Tunkel| first1 = Allan R.| last2 = Glaser| first2 = Carol A.| last3 = Bloch| first3 = Karen C.| last4 = Sejvar| first4 = James J.| last5 = Marra| first5 = Christina M.| last6 = Roos| first6 = Karen L.| last7 = Hartman| first7 = Barry J.| last8 = Kaplan| first8 = Sheldon L.| last9 = Scheld| first9 = W. Michael| last10 = Whitley| first10 = Richard J.| last11 = Infectious Diseases Society of America| title = The management of encephalitis: clinical practice guidelines by the Infectious Diseases Society of America| journal = Clinical Infectious Diseases: An Official Publication of the Infectious Diseases Society of America| date = 2008-08-01| pmid = 18582201}}</ref>
* Pathogen-directed antimicrobial therapy<ref>{{Cite journal| doi = 10.1086/589747| issn = 1537-6591| volume = 47| issue = 3| pages = 303–327| last1 = Tunkel| first1 = Allan R.| last2 = Glaser| first2 = Carol A.| last3 = Bloch| first3 = Karen C.| last4 = Sejvar| first4 = James J.| last5 = Marra| first5 = Christina M.| last6 = Roos| first6 = Karen L.| last7 = Hartman| first7 = Barry J.| last8 = Kaplan| first8 = Sheldon L.| last9 = Scheld| first9 = W. Michael| last10 = Whitley| first10 = Richard J.| last11 = Infectious Diseases Society of America| title = The management of encephalitis: clinical practice guidelines by the Infectious Diseases Society of America| journal = Clinical Infectious Diseases: An Official Publication of the Infectious Diseases Society of America| date = 2008-08-01| pmid = 18582201}}</ref>
:* Viruses
:* Viruses
::* [[Adenovirus]]
::* '''Adenovirus'''
:::* Preferred regimen: supportive
:::* Preferred regimen: supportive
::* [[Influenza|B virus]]
 
:::'''prophylactic antiviral therapy after bite or scratch'''
::* '''B virus (herpes B virus)'''
::::* Preferred regimen: [[Valacyclovir]]
:::* Established disease
:::'''established disease'''
::::* Preferred regimen: [[Valacyclovir]] 1,000 mg PO tid {{or}} [[Ganciclovir]] 5 mg/kg IV q12h for ≥ 14 days until resolution of neurologic symptoms, then [[Acyclovir]] 800 mg PO 5 times daily indefinitely {{or}} [[Valacyclovir]] 1 g PO tid indefinitely
::::* Preferred regimen: [[Valacyclovir]] {{or}} [[Acyclovir]] {{or}} [[Ganciclovir]]
::::* Alternative regimen: [[Acyclovir]] 15 mg/kg IV q8h for ≥ 14 days until resolution of neurologic symptoms, then [[Acyclovir]] 800 mg PO 5 times daily {{or}} [[Valacyclovir]] 1 g PO tid indefinitely
::* [[CMV]]
:::* Prophylaxis after bite or scratch
:::* Preferred regimen: [[Ganciclovir]] {{and}} [[foscarnet]]
::::* Preferred regimen: [[Valacyclovir]] 1,000 mg PO tid
::* [[Eastern equine encephalitis virus]]
 
::* '''Cytomegalovirus (CMV)'''
:::* Preferred regimen: [[Ganciclovir]] 5 mg/kg IV q12h for 14–21 days, followed by 5 mg/kg IV qd for maintenance {{and}} [[Foscarnet]] 90 mg/kg IV q12h for 14–21 days, followed by 90-120 mg/kg IV qd for maintenance
 
::* '''Eastern equine encephalitis virus'''
:::* Preferred regimen: supportive
:::* Preferred regimen: supportive
::* [[EBV]]
 
:::* Preferred regimen: supportive {{and}} [[Corticosteroids]]
::* '''Epstein-Barr virus (EBV)'''
::* [[Hendra virus]]
:::* Preferred regimen: supportive {{withorwithout}} [[Corticosteroids]]
:::: Note: Acyclovir is not recommended.
 
::* '''Hendra virus'''
:::* Preferred regimen: supportive
:::* Preferred regimen: supportive
::* [[Human herpesvirus 6|HHV-6]]
:::* Preferred regimen: [[Ganciclovir]] {{or}} [[Foscarnet]]
::* [[HIV]]
:::* Preferred regimen: [[HAART]]


::* '''HSV-1 and HSV-2'''
::* '''HSV-1 and HSV-2'''
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:::* Preferred regimen (neonates): [[Acyclovir]] 20 mg/kg IV q8h for 21 days
:::* Preferred regimen (neonates): [[Acyclovir]] 20 mg/kg IV q8h for 21 days


::* '''Human herpesvirus 6 (HHV-6)'''
:::* Preferred regimen: [[Ganciclovir]] 5 mg/kg IV q12h for 14–21 days, followed by 5 mg/kg IV qd for maintenance {{or}} [[Foscarnet]] 90 mg/kg IV q12h for 14–21 days, followed by 90-120 mg/kg IV qd for maintenance


::* [[Influenza virus]]
::* '''Human immunodeficiency virus (HIV)'''
:::* Preferred regimen: [[Oseltamivir]]
:::* Preferred regimen: [[HAART]]
::* [[Japanese encephalitis virus]]
 
::* '''Influenza virus'''
:::* Preferred regimen: [[Oseltamivir]] 75 mg PO bid
 
::* '''Japanese encephalitis virus'''
:::* Preferred regimen: supportive
:::* Preferred regimen: supportive
::* [[JC virus]]
:::: Note: Interferon alpha is not recommended.
:::* Preferred regimen: Reversal or control of immunosuppression {{and}} [[HAART]] in patients with [[AIDS]]
 
::* [[La Crosse virus]]
::* '''JC virus'''
:::* Preferred regimen: Reversal or control of immunosuppression {{or}} [[HAART]] in patients with AIDS
 
::* '''La Crosse virus'''
:::* Preferred regimen: supportive
:::* Preferred regimen: supportive
::* [[Measles virus]]
 
:::'''life-threatening disease'''
::* '''Measles virus'''
:::* Life-threatening disease
::::* Preferred regimen: [[Ribavirin]]
::::* Preferred regimen: [[Ribavirin]]
:::'''SSPE'''
:::* SSPE
::::* Preferred regimen: [[Ribavirin]] intrathecal  
::::* Preferred regimen: [[Ribavirin]] intrathecal
::* [[Mumps virus]]
 
::* '''Mumps virus'''
:::* Preferred regimen: supportive
:::* Preferred regimen: supportive
::* [[Murray Valley encephalitis virus]]
 
::* '''Murray Valley encephalitis virus'''
:::* Preferred regimen: supportive
:::* Preferred regimen: supportive
::* [[Nipah virus]]
 
:::* Preferred regimen: supportive {{and}} [[Ribavirin]]
::* '''Nipah virus'''
::* [[Non-Polio enterovirus infections|Nonpolio enteroviruses]]
:::* Preferred regimen: supportive {{and}} Intraventricular γ-globulin (for chronic and/or severe disease)
::* [[Poliovirus]]
:::* Preferred regimen: supportive
:::* Preferred regimen: supportive
::* [[Powassan virus]]
 
:::* Alternative regimen: [[Ribavirin]]
 
::* '''Nonpolio enteroviruses'''
:::* Preferred regimen: supportive
:::* Preferred regimen: supportive
::* [[Rabies virus]]
:::: Note: Consider intraventricular γ-globulin for chronic and/or severe disease.
:::'''postxposure prophylaxis'''
 
::::* Preferred regimen: rabies immunoglobulin {{and}} vaccine
::* '''Poliovirus'''
:::'''after onset of disease'''
::::* Preferred regimen: supportive
::* [[Rubella virus]]
:::* Preferred regimen: supportive
:::* Preferred regimen: supportive
::* St. Louis encephalitis virus
 
::* '''Powassan virus'''
:::* Preferred regimen: supportive
:::* Preferred regimen: supportive
:::* Alternative regimen: IFN-a-2b
 
::* Tickborne encephalitis virus
::* '''Rabies virus'''
:::* Preferred regimen: supportive
:::* Preferred regimen: supportive
::* [[Vaccinia]]
:::: Note: Administer rabies [[immunoglobulin]] and [[vaccination]] for postxposure prophylaxis.
:::* Preferred regimen: supportive {{withorwithout}} [[Corticosteroids]]
 
::* [[Venezuelan equine encephalitis virus]]
::* '''Rubella virus'''
:::* Preferred regimen: supportive
 
::* '''St. Louis encephalitis virus'''
:::* Preferred regimen: supportive
:::* Alternative regimen: [[IFN-α-2b]]
 
::* '''Tickborne encephalitis virus'''
:::* Preferred regimen: supportive
 
::* '''Vaccinia'''
:::* Preferred regimen: supportive {{withorwithout}} [[Corticosteroids]] (if suggestive of post-immunization)
 
::* '''Venezuelan equine encephalitis virus'''
:::* Preferred regimen: supportive
:::* Preferred regimen: supportive


::* [[VZV]]
::* '''Varicella zoster virus (VZV)'''
:::* Preferred regimen: [[Acyclovir]] 10–15 mg/kg IV q8h for 10-14 days {{withorwithout}} [[Corticosteroids]]
:::* Preferred regimen: [[Acyclovir]] 10–15 mg/kg IV q8h for 10–14 days {{withorwithout}} [[Corticosteroids]]
:::* Alternative regimen: [[Ganciclovir]] {{withorwithout}} [[Corticosteroids]]
:::* Alternative regimen: [[Ganciclovir]] 5 mg/kg IV q12h for 14–21 days, followed by 5 mg/kg IV qd for maintenance {{withorwithout}} [[Corticosteroids]]


::* [[West Nile virus]]
::* '''West Nile virus'''
:::* Preferred regimen: supportive
:::* Preferred regimen: supportive
::* [[Western equine encephalitis virus]]
 
::* '''Western equine encephalitis virus'''
:::* Preferred regimen: supportive
:::* Preferred regimen: supportive


:* Bacteria
:* Bacteria
::* [[Anaplasma phagocytophilum]] (human granulocytotrophic ehrlichiosis)
::* '''Anaplasma phagocytophilum (human granulocytotrophic ehrlichiosis)'''
:::* Preferred regimen: [[Doxycycline]]
:::* Preferred regimen: [[Doxycycline]]
::* [[Bartonella bacilliformis]] ([[Oroya fever]])
 
:::* Preferred regimen: [[Chloramphenicol]] {{or}} [[Ciprofloxacin]]] {{or}} [[Doxycycline]] {{or}} [[Ampicillin]] {{or}} [[trimethoprim-sulfamethoxazole]]
::* '''Bartonella bacilliformis (Oroya fever, Carrion's disease)'''
::* [[Bartonella henselae]] ([[Cat scratch disease]])
:::* Preferred regimen: [[Chloramphenicol]] {{or}} [[Ciprofloxacin]]] {{or}} [[Doxycycline]] {{or}} [[Ampicillin]] {{or}} [[Trimethoprim-Sulfamethoxazole]]
 
::* '''Bartonella henselae (cat scratch disease)'''
:::* Preferred regimen: [[Doxycycline]] {{or}} [[Azithromycin]] {{withorwithout}} [[Rifampin]]
:::* Preferred regimen: [[Doxycycline]] {{or}} [[Azithromycin]] {{withorwithout}} [[Rifampin]]
::* [[Borrelia burgdorferi]] ([[Lyme disease]])
 
:::* preferred regimen: [[Ceftriaxone]] {{or}} [[Cefotaxime]] {{or}} [[Penicillin G]]
::* '''Borrelia burgdorferi (Lyme disease)'''
::* [[Coxiella burnetii]] ([[Q fever]])
:::* Preferred regimen: [[Ceftriaxone]] {{or}} [[Cefotaxime]] {{or}} [[Penicillin G]]
:::* Preferred regimen:  [[Doxycycline]] {{and}} [[Fluoroquinolone]] {{and}} [[Rifampin]]  
 
::* Ehrlichia chaffeensis (human monocytotrophic ehrlichiosis)
::* '''Coxiella burnetii (Q fever)'''
:::* Preferred regimen:  [[Doxycycline]] {{and}} [[Fluoroquinolone]] {{and}} [[Rifampin]]
 
::* '''Ehrlichia chaffeensis (human monocytotrophic ehrlichiosis)'''
:::* Preferred regimen: [[Doxycycline]]
:::* Preferred regimen: [[Doxycycline]]
::* [[Listeria monocytogenes]]
 
:::* Preferred regimen: [[Ampicillin]] {{or}} [[Trimethoprim-sulfamethoxazole]] {{and}} [[Gentamicin]]
::* '''Listeria monocytogenes'''
::* [[Mycobacterium tuberculosis]]
:::* Preferred regimen: [[Ampicillin]] {{and}} [[Gentamicin]]
:::'''with meningitis'''
:::* Alternative regimen: [[Trimethoprim-Sulfamethoxazole]]
:::* Preferred regimen: [[Dexamethasone]]  
 
:::'''without meningitis'''
::* '''Mycobacterium tuberculosis'''
:::* Preferred regimen: [[Isoniazid]] {{or}} [[Rifampin]] {{or}} [[Pyrazinamide]] {{or}} [[Ethambutol]]  
:::* Preferred regimen: ([[Isoniazid]] {{and}} [[Rifampin]] {{and}} [[Pyrazinamide]] {{and}} [[Ethambutol]]) {{withorwithout}} [[Dexamethasone]] (if suggestive of meningitis)
::* [[Mycoplasma pneumoniae]]
 
:::* Preferred regimen: [[Azithromycin]] {{or}} [[Doxycycline]] {{or}} [[Fluoroquinolone]]  
::* '''Mycoplasma pneumoniae'''
::* [[Rickettsia rickettsii]] ([[Rocky Mountain spotted fever]])
:::* Preferred regimen: [[Azithromycin]] {{or}} [[Doxycycline]] {{or}} [[Fluoroquinolone]]
 
::* '''Rickettsia rickettsii (Rocky Mountain spotted fever)'''
:::* Preferred regimen: [[Doxycycline]]  
:::* Preferred regimen: [[Doxycycline]]  
:::* Alternative regimen: [[Chloramphenicol]]
:::* Alternative regimen: [[Chloramphenicol]] (for pregnant patients)
::* [[Treponema pallidum]] ([[syphilis]])
 
:::* preferred regimen: [[Ceftriaxone]] {{or}} [[Penicillin G]]
::* '''Treponema pallidum (syphilis)'''
::* [[Tropheryma whipplei]] ([[Whipple's disease]])
:::* Preferred regimen: [[Penicillin G]]
:::* Preferred regimen: [[Ceftriaxone]] for 2–4 weeks, followed by [[Trimethoprim-sulfamethoxazole]] {{or}} [[Cefixime]] for 1–2 years  
:::* Alternative regimen: [[Ceftriaxone]]
 
::* '''Tropheryma whipplei (Whipple's disease)'''
:::* Preferred regimen: [[Ceftriaxone]] for 2–4 weeks, followed by [[Trimethoprim-Sulfamethoxazole]] for 1–2 years {{or}} [[Cefixime]] for 1–2 years  


:* Fungi
:* Fungi
::* [[Coccidioides posadasii|Coccidioides]]
::* '''Coccidioides'''
:::* Preferred regimen: [[Fluconazole]]
:::* Preferred regimen: [[Fluconazole]]
:::* Alternative regimen: [[Itraconazole]] {{or}} [[Voriconazole]] {{or}} [[Amphotericin B]] (intravenous and intrathecal)
:::* Alternative regimen: [[Itraconazole]] {{or}} [[Voriconazole]] {{or}} [[Amphotericin B]] (intravenous and intrathecal)
::* [[Cryptococcus neoformans]]
 
:::* Preferred regimen: [[Amphotericin B]] [[deoxycholate]] {{and}} [[flucytosine]] for 2 weeks, followed by [[fluconazole]] for 8 weeks {{or}}v Lipid formulation of amphotericin B {{and}} flucytosine for 2 weeks, followed by fluconazole for 8 weeks {{or}} Amphotericin B {{and}} flucytosine for 6–10 weeks
::* '''Cryptococcus neoformans'''
::* [[Histoplasma capsulatum]]
:::* Preferred regimen (1): [[Amphotericin B]] deoxycholate {{and}} [[Flucytosine]] for 2 weeks, followed by [[Fluconazole]] for 8 weeks
:::* Preferred regimen: Liposomal amphotericin B for 4–6 weeks, followed by itraconazole for at least 1 year and until resolution of CSF abnormalities
:::* Preferred regimen (2): [[Amphotericin B]] lipid complex {{and}} [[Flucytosine]] for 2 weeks, followed by [[Fluconazole]] for 8 weeks
:::* Preferred regimen (3): [[Amphotericin B]] deoxycholate {{and}} [[Flucytosine]] for 6–10 weeks, followed by [[Fluconazole]] for 8 weeks
:::: Note: Consider placement of lumbar drain or VP shunt.
 
::* '''Histoplasma capsulatum'''
:::* Preferred regimen: [[Amphotericin B]] liposomal for 4–6 weeks, followed by [[Itraconazole]] for at least 1 year and until resolution of CSF abnormalities


:* Protozoa
:* Protozoa
::* [[Acanthamoeba]]
::* '''Acanthamoeba'''
:::* Preferred regimen: Trimethoprim-sulfamethoxazole {{and}} [[rifampin]] {{and}} [[ketoconazole]] {{or}} [[Fluconazole]] {{and}} [[sulfadiazine]] {{and}} [[pyrimethamine]]
:::* Preferred regimen (1): [[Trimethoprim-Sulfamethoxazole]] {{and}} [[Rifampin]] {{and}} [[Ketoconazole]]
::* [[Balamuthia mandrillaris]]
:::* Preferred regimen (2): [[Fluconazole]] {{and}} [[Sulfadiazine]] {{and}} [[Pyrimethamine]]
:::* Preferred regimen: [[Azithromycin]] {{or}} [[Clarithromycin]] {{and}} [[pentamidine]] {{and}} [[flucytosine]] {{and}} [[fluconazole]] {{and}} [[sulfadiazine]] {{and}} [[thioridazine]] {{or}} [[trifluoperazine]]
 
::* [[Naegleria fowleri]]
::* '''Balamuthia mandrillaris'''
:::* Preferred regimen: Amphotericin B (intravenous and intrathecal) {{and}} rifampin {{and}} [[azithromycin]] {{or}} [[sulfisoxazole]] {{or}} [[miconazole]]
:::* Preferred regimen: ([[Azithromycin]] {{or}} [[Clarithromycin]]) {{and}} [[Pentamidine]] {{and}} [[Flucytosine]] {{and}} [[Fluconazole]] {{and}} [[Sulfadiazine]] {{and}} ([[Thioridazine]] {{or}} [[Trifluoperazine]])
::* [[Plasmodium falciparum]]
 
:::* Preferred regimen: [[Quinine]] {{or}} [[quinidine]] {{or}} [[artesunate]] {{or}} [[artemether]]
::* '''Naegleria fowleri'''
:::* Alternative regimen: Atovaquone {{or}} proguanil {{or}} Exchange transfusion (less than 10% parasitemia or cere- bral malaria)
:::* Preferred regimen: [[Amphotericin B]] (intravenous and intrathecal) {{and}} [[Rifampin]] {{and}} ([[Azithromycin]] {{or}} [[Sulfisoxazole]] {{or}} [[Miconazole]])
::* [[Toxoplasma gondii]]
 
:::* Preferred regimen: [[Pyrimethamine]] {{and}} [[Sulfadiazine]] {{or}} [[Clindamycin]] [[and}} [[Pyrimethamine]]
::* '''Plasmodium falciparum'''
:::* Preferred regimen: [[Quinine]] {{or}} [[Quinidine]] {{or}} [[Artesunate]] {{or}} [[Artemether]]
:::* Alternative regimen (1): [[Atovaquone-Proguanil]]
:::* Alternative regimen (2): Exchange transfusion (for &gt; 10% parasitemia or cerebral malaria)
 
::* '''Toxoplasma gondii'''
:::* Preferred regimen: [[Pyrimethamine]] {{and}} [[Sulfadiazine]] {{or}} [[Clindamycin]]
:::* Alternative regimen (1): [[Trimethoprim-sulfamethoxazole]]
:::* Alternative regimen (1): [[Trimethoprim-sulfamethoxazole]]
:::* Alternative regimen (2): [[Pyrimethamine]] {{and}} atovaqone {{or}} [[Pyrimethamine]] {{and}} [[clarithromycin]] {{or}} Pyrimethamine {{and}} [[azithromycin]] {{or}} Pyrimethamine {{and}} [[dapsone]]
:::* Alternative regimen (2): [[Pyrimethamine]] {{and}} ([[Atovaquone]] {{or}} [[Clarithromycin]] {{or}} [[Azithromycin]] {{or}} [[Dapsone]]
::* [[Trypanosoma brucei gambiense]] (West African trypanosomiasis)
 
::* '''Trypanosoma brucei gambiense (West African trypanosomiasis)'''
:::* Preferred regimen: [[Eflornithine]] {{or}} [[Melarsoprol]]
:::* Preferred regimen: [[Eflornithine]] {{or}} [[Melarsoprol]]
::* [[Trypanosoma brucei rhodesiense]] (East African trypanosomiasis)
 
::* '''Trypanosoma brucei rhodesiense (East African trypanosomiasis)'''
:::* Preferred regimen: [[Melarsoprol]]
:::* Preferred regimen: [[Melarsoprol]]


:* Helminths
:* Helminths
::* [[Baylisascaris|Baylisascaris procyonis]]
::* '''Baylisascaris procyonis'''
:::* Preferred regimen: [[Corticosteroids]]
:::* Preferred regimen: [[Albendazole]] {{and}} [[Diethylcarbamazine]] {{and}} [[Corticosteroids]]
:::* Alternative regimen: [[Albendazole]] {{and}} [[diethylcarbamazine]]
 
::* [[Gnathostoma spinigerum|Gnathostoma]]
 
::* '''Gnathostoma'''
:::* Preferred regimen: [[Albendazole]] {{or}} [[Ivermectin]]
:::* Preferred regimen: [[Albendazole]] {{or}} [[Ivermectin]]
::* [[Taenia solium]] ([[cysticercosis]])
 
:::* Preferred regimen: [[Albendazole]] {{or}} [[Corticosteroids]]
::* '''Taenia solium (cysticercosis)'''
:::* Alternative regimen: [[Praziquantel]]
:::* Preferred regimen: [[Albendazole]] {{and}} [[Corticosteroids]]
:::* Alternative regimen: [[Praziquantel]] {{and}} [[Corticosteroids]]


:* Prion
:* Prion
::* [[Transmissible spongiform encephalopathy|Human transmissible spongiform encephalopathy]]
::* '''Human transmissible spongiform encephalopathy'''
:::* Preferred regimen: supportive
:::* Preferred regimen: supportive

Latest revision as of 04:50, 7 June 2015

Encephalitis

  • Empiric antimicrobial therapy[1]
  • Preferred regimen: Acyclovir 10 mg/kg IV q8h for 14–21 days
Note (1): Acyclovir should be initiated in all patients with suspected encephalitis, pending results of diagnostic studies.
Note (2): Other empiric antimicrobial agents should be administered on the basis of specific epidemiologic or clinical clues.
  • Specific epidemiologic considerations[2]
  • Agammaglobulinemia — Enteroviruses, Mycoplasma pneumoniae
  • Age
  • Neonates — Herpes simplex virus type 2, cytomegalovirus, rubella virus, Listeria monocytogenes, Treponema pallidum, Toxoplasma gondii
  • Infants and children — Eastern equine encephalitis virus, Japanese encephalitis virus, Murray Valley encephalitis virus, influenza virus, La Crosse virus
  • Elderly persons — Eastern equine encephalitis virus, St. Louis encephalitis virus, West Nile virus, sporadic CJD, L. monocytogenes
  • Animal contact
  • Bats — Rabies virus, Nipah virus
  • Birds — West Nile virus, Eastern equine encephalitis virus, Western equine encephalitis virus, Venezuelan equine encephalitis virus, St. Louis encephalitis virus, Murray Valley encephalitis virus, Japanese encephalitis virus, Cryptococcus neoformans (bird droppings)
  • Cats — Rabies virus, Coxiella burnetii, Bartonella henselae, T. gondii
  • Dogs — Rabies virus
  • Horses — Eastern equine encephalitis virus, Western equine encephalitis virus, Venezuelan equine encephalitis virus, Hendra virus
  • Old World primates — B virus
  • Raccoons — Rabies virus, Baylisascaris procyonis
  • Rodents — Eastern equine encephalitis virus (South America), Venezuelan equine encephalitis virus, tickborne encephalitis virus, Powassan virus (woodchucks), La Crosse virus (chipmunks and squirrels), Bartonella quintana
  • Sheep and goats — C. burnetii
  • Skunks — Rabies virus
  • Swine — Japanese encephalitis virus, Nipah virus
  • White-tailed deer — Borrelia burgdorferi
  • Immunocompromised persons — Varicella zoster virus, cytomegalovirus, human herpesvirus 6, West Nile virus, HIV, JC virus, L. monocytogenes, Mycobacterium tuberculosis, C. neoformans, Coccidioides species, Histoplasma capsulatum, T. gondii
  • Ingestion
  • Raw or partially cooked meat — T. gondii
  • Raw meat, fish, or reptiles — Gnanthostoma species
  • Unpasteurized milk — Tickborne encephalitis virus, L. monocytogenes, C. burnetii
  • Insect contact
  • Mosquitoes — Eastern equine encephalitis virus, Western equine encephalitis virus, Venezuelan equine encephalitis virus, St. Louis encephalitis virus, Murray Valley encephalitis virus, Japanese encephalitis virus, West Nile virus, La Crosse virus, Plasmodium falciparum
  • Sandflies — Bartonella bacilliformis
  • Ticks — Tickborne encephalitis virus, Powassan virus, Rickettsia rickettsii, Ehrlichia chaffeensis, Anaplasma phagocytophilum, C. burnetii (rare), B. burgdorferi
  • Tsetse flies — Trypanosoma brucei gambiense, Trypanosoma brucei rhodesiense
  • Occupation
  • Exposure to animals — Rabies virus, C. burnetii, Bartonella species
  • Exposure to horses — Hendra virus
  • Exposure to Old World primates — B virus
  • Laboratory workers — West Nile virus, HIV, C. burnetii, Coccidioides species
  • Physicians and health care workers — Varicella zoster virus, HIV, influenza virus, measles virus, M. tuberculosis
  • Veterinarians — Rabies virus, Bartonella species, C. burnetii
  • Person-to-person transmission — Herpes simplex virus (neonatal), varicella zoster virus, Venezuelan equine encephalitis virus (rare), poliovirus, nonpolio enteroviruses, measles virus, Nipah virus, mumps virus, rubella virus, Epstein-Barr virus, human herpesvirus 6, B virus, West Nile virus (transfusion, transplantation, breast feeding), HIV, rabies virus (transplantation), influenza virus, M. pneumoniae, M. tuberculosis, T. pallidum
  • Recent vaccination — Acute disseminated encephalomyelitis
  • Recreational activities
  • Camping/hunting — Agents transmitted by mosquitoes and ticks
  • Sexual contact — HIV, T. pallidum
  • Spelunking — Rabies virus, H. capsulatum
  • Swimming — Enteroviruses, Naegleria fowleri
  • Season
  • Late summer/early fall — Agents transmitted by mosquitoes and ticks, enteroviruses
  • Winter — Influenza virus
  • Transfusion and transplantation — Cytomegalovirus, Epstein-Barr virus, West Nile virus, HIV, tickborne encephalitis virus, rabies virus, iatrogenic CJD, T. pallidum, A. phagocytophilum, R. rickettsii, C. neoformans, Coccidioides species, H. capsulatum, T. gondii
  • Travel
  • Africa — Rabies virus, West Nile virus, P. falciparum, T. brucei gambiense, T. brucei rhodesiense
  • Australia — Murray Valley encephalitis virus, Japanese encephalitis virus, Hendra virus
  • Central America — Rabies virus, Eastern equine encephalitis virus, Western equine encephalitis virus, Venezuelan equine encephalitis virus, St. Louis encephalitis virus, R. rickettsii, P. falciparum, Taenia solium
  • Europe — West Nile virus, tickborne encephalitis virus, A. phagocytophilum, B. burgdorferi
  • India, Nepal — Rabies virus, Japanese encephalitis virus, P. falciparum
  • Middle East — West Nile virus, P. falciparum
  • Russia — Tickborne encephalitis virus
  • South America — Rabies virus, Eastern equine encephalitis virus, Western equine encephalitis virus, Venezuelan equine encephalitis virus, St. Louis encephalitis virus, R. rickettsii, B. bacilliformis (Andes mountains), P. falciparum, T. solium
  • Southeast Asia, China, Pacific Rim — Japanese encephalitis virus, tickborne encephalitis virus, Nipah virus, P. falciparum, Gnanthostoma species, T. solium
  • Unvaccinated status — Varicella zoster virus, Japanese encephalitis virus, poliovirus, measles virus, mumps virus, rubella virus
  • Specific clinical considerations[3]
  • General findings
  • Hepatitis — Coxiella burnetii
  • Lymphadenopathy — HIV, Epstein-Barr virus, cytomegalovirus, measles virus, rubella virus, West Nile virus, Treponema pallidum, Bartonella henselae and other Bartonella species, Mycobacterium tuberculosis, Toxoplasma gondii, Trypanosoma brucei gambiense
  • Parotitis — Mumps virus
  • Rash — Varicella zoster virus, B virus, human herpesvirus 6, West Nile virus, rubella virus, some enteroviruses, HIV, Rickettsia rickettsii, Mycoplasma pneumoniae, Borrelia burgdorferi, T. pallidum, Ehrlichia chaffeensis, Anaplasma phagocytophilum
  • Respiratory tract findings — Venezuelan equine encephalitis virus, Nipah virus, Hendra virus, influenza virus, adenovirus, M. pneumoniae, C. burnetii, M. tuberculosis, Histoplasma capsulatum
  • Retinitis — Cytomegalovirus, West Nile virus, B. henselae, T. pallidum
  • Urinary symptoms — St. Louis encephalitis virus
  • Neurologic findings
  • Cerebellar ataxia — Varicella zoster virus (children), Epstein-Barr virus, mumps virus, St. Louis encephalitis virus, Tropheryma whipplei, T. brucei gambiense
  • Cranial nerve abnormalities — Herpes simplex virus, Epstein-Barr virus, Listeria monocytogenes, M. tuberculosis, T. pallidum, B. burgdorferi, T. whipplei, Cryptococcus neoformans, Coccidioides species, H. capsulatum
  • Dementia — HIV, human transmissible spongiform encephalopathies (sCJD and vCJD), measles virus (SSPE), T. pallidum, T. whipplei
  • Myorhythmia — T. whipplei (oculomasticatory)
  • Parkinsonism — Japanese encephalitis virus, St. Louis encephalitis virus, West Nile virus, Nipah virus, T. gondii, T. brucei gambiense
  • Poliomyelitis-like flaccid paralysis — Japanese encephalitis virus, West Nile virus, tickborne encephalitis virus; enteroviruses (enterovirus-71, coxsackieviruses), poliovirus
  • Rhombencephalitis — Herpes simplex virus, West Nile virus, enterovirus 71, L. monocytogenes
  • Pathogen-directed antimicrobial therapy[4]
  • Viruses
  • Adenovirus
  • Preferred regimen: supportive
  • B virus (herpes B virus)
  • Established disease
  • Preferred regimen: Valacyclovir 1,000 mg PO tid OR Ganciclovir 5 mg/kg IV q12h for ≥ 14 days until resolution of neurologic symptoms, then Acyclovir 800 mg PO 5 times daily indefinitely OR Valacyclovir 1 g PO tid indefinitely
  • Alternative regimen: Acyclovir 15 mg/kg IV q8h for ≥ 14 days until resolution of neurologic symptoms, then Acyclovir 800 mg PO 5 times daily OR Valacyclovir 1 g PO tid indefinitely
  • Prophylaxis after bite or scratch
  • Cytomegalovirus (CMV)
  • Preferred regimen: Ganciclovir 5 mg/kg IV q12h for 14–21 days, followed by 5 mg/kg IV qd for maintenance AND Foscarnet 90 mg/kg IV q12h for 14–21 days, followed by 90-120 mg/kg IV qd for maintenance
  • Eastern equine encephalitis virus
  • Preferred regimen: supportive
  • Epstein-Barr virus (EBV)
Note: Acyclovir is not recommended.
  • Hendra virus
  • Preferred regimen: supportive
  • HSV-1 and HSV-2
  • Preferred regimen: Acyclovir 10 mg/kg IV q8h for 14–21 days
  • Preferred regimen (neonates): Acyclovir 20 mg/kg IV q8h for 21 days
  • Human herpesvirus 6 (HHV-6)
  • Preferred regimen: Ganciclovir 5 mg/kg IV q12h for 14–21 days, followed by 5 mg/kg IV qd for maintenance OR Foscarnet 90 mg/kg IV q12h for 14–21 days, followed by 90-120 mg/kg IV qd for maintenance
  • Human immunodeficiency virus (HIV)
  • Influenza virus
  • Japanese encephalitis virus
  • Preferred regimen: supportive
Note: Interferon alpha is not recommended.
  • JC virus
  • Preferred regimen: Reversal or control of immunosuppression OR HAART in patients with AIDS
  • La Crosse virus
  • Preferred regimen: supportive
  • Measles virus
  • Life-threatening disease
  • SSPE
  • Mumps virus
  • Preferred regimen: supportive
  • Murray Valley encephalitis virus
  • Preferred regimen: supportive
  • Nipah virus
  • Preferred regimen: supportive
  • Nonpolio enteroviruses
  • Preferred regimen: supportive
Note: Consider intraventricular γ-globulin for chronic and/or severe disease.
  • Poliovirus
  • Preferred regimen: supportive
  • Powassan virus
  • Preferred regimen: supportive
  • Rabies virus
  • Preferred regimen: supportive
Note: Administer rabies immunoglobulin and vaccination for postxposure prophylaxis.
  • Rubella virus
  • Preferred regimen: supportive
  • St. Louis encephalitis virus
  • Preferred regimen: supportive
  • Alternative regimen: IFN-α-2b
  • Tickborne encephalitis virus
  • Preferred regimen: supportive
  • Vaccinia
  • Preferred regimen: supportive ± Corticosteroids (if suggestive of post-immunization)
  • Venezuelan equine encephalitis virus
  • Preferred regimen: supportive
  • Varicella zoster virus (VZV)
  • West Nile virus
  • Preferred regimen: supportive
  • Western equine encephalitis virus
  • Preferred regimen: supportive
  • Bacteria
  • Anaplasma phagocytophilum (human granulocytotrophic ehrlichiosis)
  • Bartonella bacilliformis (Oroya fever, Carrion's disease)
  • Bartonella henselae (cat scratch disease)
  • Borrelia burgdorferi (Lyme disease)
  • Coxiella burnetii (Q fever)
  • Ehrlichia chaffeensis (human monocytotrophic ehrlichiosis)
  • Listeria monocytogenes
  • Mycobacterium tuberculosis
  • Mycoplasma pneumoniae
  • Rickettsia rickettsii (Rocky Mountain spotted fever)
  • Treponema pallidum (syphilis)
  • Tropheryma whipplei (Whipple's disease)
  • Fungi
  • Coccidioides
  • Cryptococcus neoformans
Note: Consider placement of lumbar drain or VP shunt.
  • Histoplasma capsulatum
  • Preferred regimen: Amphotericin B liposomal for 4–6 weeks, followed by Itraconazole for at least 1 year and until resolution of CSF abnormalities
  • Protozoa
  • Acanthamoeba
  • Balamuthia mandrillaris
  • Naegleria fowleri
  • Plasmodium falciparum
  • Toxoplasma gondii
  • Trypanosoma brucei gambiense (West African trypanosomiasis)
  • Trypanosoma brucei rhodesiense (East African trypanosomiasis)
  • Helminths
  • Baylisascaris procyonis


  • Gnathostoma
  • Taenia solium (cysticercosis)
  • Prion
  • Human transmissible spongiform encephalopathy
  • Preferred regimen: supportive
  1. Tunkel, Allan R.; Glaser, Carol A.; Bloch, Karen C.; Sejvar, James J.; Marra, Christina M.; Roos, Karen L.; Hartman, Barry J.; Kaplan, Sheldon L.; Scheld, W. Michael; Whitley, Richard J.; Infectious Diseases Society of America (2008-08-01). "The management of encephalitis: clinical practice guidelines by the Infectious Diseases Society of America". Clinical Infectious Diseases: An Official Publication of the Infectious Diseases Society of America. 47 (3): 303–327. doi:10.1086/589747. ISSN 1537-6591. PMID 18582201.
  2. Tunkel, Allan R.; Glaser, Carol A.; Bloch, Karen C.; Sejvar, James J.; Marra, Christina M.; Roos, Karen L.; Hartman, Barry J.; Kaplan, Sheldon L.; Scheld, W. Michael; Whitley, Richard J.; Infectious Diseases Society of America (2008-08-01). "The management of encephalitis: clinical practice guidelines by the Infectious Diseases Society of America". Clinical Infectious Diseases: An Official Publication of the Infectious Diseases Society of America. 47 (3): 303–327. doi:10.1086/589747. ISSN 1537-6591. PMID 18582201.
  3. Tunkel, Allan R.; Glaser, Carol A.; Bloch, Karen C.; Sejvar, James J.; Marra, Christina M.; Roos, Karen L.; Hartman, Barry J.; Kaplan, Sheldon L.; Scheld, W. Michael; Whitley, Richard J.; Infectious Diseases Society of America (2008-08-01). "The management of encephalitis: clinical practice guidelines by the Infectious Diseases Society of America". Clinical Infectious Diseases: An Official Publication of the Infectious Diseases Society of America. 47 (3): 303–327. doi:10.1086/589747. ISSN 1537-6591. PMID 18582201.
  4. Tunkel, Allan R.; Glaser, Carol A.; Bloch, Karen C.; Sejvar, James J.; Marra, Christina M.; Roos, Karen L.; Hartman, Barry J.; Kaplan, Sheldon L.; Scheld, W. Michael; Whitley, Richard J.; Infectious Diseases Society of America (2008-08-01). "The management of encephalitis: clinical practice guidelines by the Infectious Diseases Society of America". Clinical Infectious Diseases: An Official Publication of the Infectious Diseases Society of America. 47 (3): 303–327. doi:10.1086/589747. ISSN 1537-6591. PMID 18582201.