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==Overview==
==Overview==
Cystic fibrosis is an [[autosomal recessive]] disease that caused by [[Mutation|mutations]] in the [[CFTR (gene)|cystic fibrosis transmembrane conductance regulator (CFTR) gene]]. [[Point mutation|Substitution of a single amino acid]] is the most common type of [[CFTR (gene)|CFTR gene]] [[mutation]]. [[CFTR (gene)|CFTR gene]] functions as a [[chloride channel]] (pumps [[chloride]] from the [[intracellular]] space to the [[extracellular]] space) found on the surface of the [[Epithelium|epithelial cells]]. The genetic [[Mutation|mutations]] result in defective transport of [[chloride]], and secondarily [[sodium]] and eventually abnormal viscous [[Mucoid plaque|mucoid]] secretions mostly in [[lungs]] (results in [[airway]] surface liquid depletion, decreased [[Mucociliary clearance|mucociliary transport]], [[inflammation]] and [[infection]]) and [[Gastrointestinal tract|GI tract]] (results in reduced volume of [[Pancreas|pancreatic]] secretion, [[Pancreas|pancreatic]] tissue destruction and [[fibrosis]], [[malnutrition]] and poor growth). [[Infertility]] due to [[atresia]]/absent [[Vas deferens|vasa deferentia]] and abnormal/absent [[Seminal vesicle|seminal vesicles]] is the associated condition of cystic fibrosis.


==Pathophysiology==
==Pathophysiology==


===Pathogenesis===
===Pathogenesis===
Cystic Fibrosis (CF) is an autosomal recessive, life-limiting disease resulting from mutations in the cystic fibrosis transmembrane conductance regulator (''CFTR'') gene. The gene is comprised of 27 exons and is situated on chromosome 7. The protein encoded by the ''CFTR'' gene is a cAMP-regulated chloride channel situated in the apical membrane of exocrine epithelial cells;1 other processes with which it is involved include regulation of the epithelial sodium channel, and bicarbonate transport. There is conflicting evidence on its role in regulating the pH of intracellular organelles and the consequences on cellular processes such as sialylation and sulfation. In patients with CF, CFTR protein function may be abnormal due to a lack of production (Class 1 mutations), failure to reach its site of action due to misfolding (Class 2; commonest Caucasian defect is Phe508Del), defects in gating (Class 3), conductance (Class 4), abnormally low channel numbers (Class 5), or decreased half-life (Class 6).
* Cystic fibrosis (CF) is an [[autosomal recessive]] disease that caused by [[Mutation|mutations]] in the [[CFTR (gene)|cystic fibrosis transmembrane conductance regulator (CFTR) gene]].<ref>National Center for Biotechnology Information (US). Genes and Disease [Internet]. Bethesda (MD): National Center for Biotechnology Information (US); 1998-. Available from: https://www.ncbi.nlm.nih.gov/books/NBK22183/</ref><ref name="pmid18506640">{{cite journal |vauthors=Voter KZ, Ren CL |title=Diagnosis of cystic fibrosis |journal=Clin Rev Allergy Immunol |volume=35 |issue=3 |pages=100–6 |year=2008 |pmid=18506640 |doi=10.1007/s12016-008-8078-x |url=}}</ref><ref name="pmid19393104">{{cite journal |vauthors=Ratjen FA |title=Cystic fibrosis: pathogenesis and future treatment strategies |journal=Respir Care |volume=54 |issue=5 |pages=595–605 |year=2009 |pmid=19393104 |doi= |url=}}</ref>
* [[CFTR (gene)|CFTR gene]] functions as a [[chloride channel]] (pumps [[chloride]] from the [[intracellular]] space to the [[extracellular]] space) found on the surface of the [[Epithelium|epithelial cells]], that line multiple organs especially [[Lung|lungs]] and [[Gastrointestinal tract|GI tract]].
* The genetic [[Mutation|mutations]] result in defective transport of [[chloride]], and secondarily [[sodium]], by [[Epithelium|epithelial cells]], and eventually abnormal viscous mucoid secretions mostly in [[Lung|lungs]] and [[Gastrointestinal tract|GI tract]].
* Other organs containing [[Epithelium|epithelia]] such as the [[Sweat gland|sweat glands]], [[Bile duct|biliary duct]], the male [[Reproductive system|reproductive]] tract, and the [[intestine]] are also affected.
* Two mechanisms which cause airway-surface-liquid depletion are as follow:
{{familytree/start |summary=Lack of CFTR normal activity}}
{{familytree | | | | A02 | |A02=Lack of [[CFTR]] normal activity}}
{{familytree | | |,|-|^|-|.| | | }}
{{familytree | | B01 | | B02 |B01=Less [[chloride]] secretion|B02=More [[sodium]] absorption}}
{{familytree | | |!| | | |!| | | | }}
{{familytree | | C01 | | C02 | | |C01=Less water transport into the [[epithelial]] surface layer|C02=Excessive [[sodium]] and water absorption through the [[epithelial]] channel}}
{{familytree/end}}


Whilst the CFTR protein is expressed in many internal organs, the major effect of such mutations is on the respiratory, gastrointestinal, and reproductive tracts, causing, in each of these sites, obstruction by thick, viscous secretions. Pulmonary disease leads to most of the morbidity associated with CF and is the cause of death in more than 90% of patients.2 The correlation of the molecular defect with this multi-system clinical picture is complex and not entirely understood. It has been shown that CF airway epithelia have abnormally high rates of sodium (and thus water) absorption, which dehydrates the airway surface liquid and impairs mucus transport. More recently, vibrating culture, which may recapitulate the in vivo setting better than the conventional static culture model, has demonstrated that these processes are well preserved until a “second hit” in the form of viral infection occurs.3 Once the airway surface becomes dehydrated, mucociliary clearance (MCC) mechanisms fail to remove any inhaled bacteria, which infect the lower airways and lead to inflammation. The CF inflammatory response is abnormal in several ways, being exaggerated,4 prolonged5 and, at least in chronic stages of infection, ineffectual.6 The presence of inflammatory cell contents such as DNA and elastase in the airway further increase mucus viscosity and contribute to tissue breakdown.
===Lung involvement in cystic fibrosis===
* In patients with cystic fibrosis abnormal [[chloride]] conductance of [[Epithelium|epithelial cells]] results in [[airway]] surface liquid depletion and decreased [[Mucociliary clearance|mucociliary transport]] ([[airway]] surface liquid is essential to support ciliary function).
* The consequence of cystic fibrosis is a vicious circle of [[inflammation]], [[tissue]] damage and [[infection]].<ref name="pmid19393104">{{cite journal |vauthors=Ratjen FA |title=Cystic fibrosis: pathogenesis and future treatment strategies |journal=Respir Care |volume=54 |issue=5 |pages=595–605 |year=2009 |pmid=19393104 |doi= |url=}}</ref>
* Also, exaggerated, generalized, and prolonged inflammatory response of lungs to [[Bacteria|bacterial]] and [[Virus|viral]] pathogen is observed.
* The inflammatory response is characterized by [[Neutrophil|neutrophilic]] dominated airway [[inflammation]] which is present even in clinically stable patients and in young [[Infant|infants]] diagnosed by neonatal [[Screening (medicine)|screening]].<ref name="pmid19393104">{{cite journal |vauthors=Ratjen FA |title=Cystic fibrosis: pathogenesis and future treatment strategies |journal=Respir Care |volume=54 |issue=5 |pages=595–605 |year=2009 |pmid=19393104 |doi= |url=}}</ref><ref name="pmid25404111">{{cite journal |vauthors=Cutting GR |title=Cystic fibrosis genetics: from molecular understanding to clinical application |journal=Nat. Rev. Genet. |volume=16 |issue=1 |pages=45–56 |year=2015 |pmid=25404111 |pmc=4364438 |doi=10.1038/nrg3849 |url=}}</ref>
* Breakdown of accumulated [[Neutrophil|neutrophils]] in the infected [[Lung|lungs]] of patients with cystic fibrosis leads to the release of large amounts of [[DNA]].
* Accumulated [[DNA]] causes high viscosity of the infected [[sputum]], followed by decreased ciliary transport and function.<ref name="pmid22093951">{{cite journal |vauthors=Konstan MW, Ratjen F |title=Effect of dornase alfa on inflammation and lung function: potential role in the early treatment of cystic fibrosis |journal=J. Cyst. Fibros. |volume=11 |issue=2 |pages=78–83 |year=2012 |pmid=22093951 |pmc=4090757 |doi=10.1016/j.jcf.2011.10.003 |url=}}</ref>
 
===Gastrointestinal tract involvement in cystic fibrosis===
 
==== Pancreatic disease: ====
* In cystic fibrosis, approximately 90% of patients present with [[Exocrine gland|exocrine]] [[pancreatic insufficiency]].
* [[Pancreas|Pancreatic]] disease results from a reduced volume of [[Pancreas|pancreatic]] secretion with low concentrations of [[bicarbonate]], followed by retained and prematurely activated digestive [[Zymogen|proenzymes]] in [[Pancreatic duct|pancreatic ducts]], resulting in tissue destruction and [[fibrosis]].<ref name="pmid12606185">{{cite journal |vauthors=Ratjen F, Döring G |title=Cystic fibrosis |journal=Lancet |volume=361 |issue=9358 |pages=681–9 |year=2003 |pmid=12606185 |doi=10.1016/S0140-6736(03)12567-6 |url=}}</ref>
* Abnormally viscous secretions in the [[Duct (anatomy)|ducts]] of the [[pancreas]], followed by loss of [[Pancreas|pancreatic]] [[Exocrine gland|exocrine]] function results in [[malnutrition]] and [[Delayed milestone|poor growth]].<ref name="pmid25404111" />
 
==== Biliary disease: ====
* One third of patients with cystic fibrosis have abnormal results on [[liver function tests]].
* Fatty infiltration is reported in up to 70% of older patients and in nearly 10% of these progresses to biliary [[cirrhosis]].
* [[Histology|Histological]] evaluation shows [[Duct (anatomy)|duct]] dilatation and intraluminal concretions.
* Bile-duct [[epithelium]] becomes [[Hyperplasia|hyperplastic]] with periductal [[inflammation]] and [[fibrosis]].
* Up to one third of patients with cystic fibrosis, a small and poorly functioning [[gallbladder]] is detected.<ref name="pmid12606185">{{cite journal |vauthors=Ratjen F, Döring G |title=Cystic fibrosis |journal=Lancet |volume=361 |issue=9358 |pages=681–9 |year=2003 |pmid=12606185 |doi=10.1016/S0140-6736(03)12567-6 |url=}}</ref>


==Genetics==
==Genetics==
[[Image:CFTR.jpg|thumb|left|350px|'''CFTR protein -''' Molecular structure of the CFTR protein]]
Cystic fibrosis is caused by [[Mutation|mutations]] in the [[CFTR (gene)|CF transmembrane conductance regulator (CFTR) gene]]. This [[gene]] codes for a [[chloride]] transporter regulated by [[Cyclic adenosine monophosphate|cyclic AMP]] ([[Cyclic adenosine monophosphate|cAMP]])-dependent [[phosphorylation]]. There are almost 2,000 variants of [[CFTR (gene)|CFTR gene]] [[Mutation|mutations]]:<ref name="pmid25404111">{{cite journal |vauthors=Cutting GR |title=Cystic fibrosis genetics: from molecular understanding to clinical application |journal=Nat. Rev. Genet. |volume=16 |issue=1 |pages=45–56 |year=2015 |pmid=25404111 |pmc=4364438 |doi=10.1038/nrg3849 |url=}}</ref>
The cystic fibrosis transmembrane conductance regulator ([[CFTR (gene)|CFTR) gene]] is found at the q31.2 [[locus (genetics)|locus]] of [[chromosome 7]]. It is 230 000 [[base pair]]s long, comprised of 27 exons and creates a protein that is 1,480 [[amino acid]]s long. The most common mutation, [[ΔF508]] is a deletion (Δ) of three nucleotides that results in a loss of the amino acid [[phenylalanine]] (F) at the 508th (508) position on the protein.<ref name="table">''Prevalence of ΔF508, G551D, G542X, R553X mutations among cystic fibrosis patients in the North of Brazil.'' Brazilian Journal of Medical and Biological Research 2005; 38:11–15. PMID 15665983</ref><ref name="pmid23776378">{{cite journal |vauthors=Burney TJ, Davies JC |title=Gene therapy for the treatment of cystic fibrosis |journal=Appl Clin Genet |volume=5 |issue= |pages=29–36 |year=2012 |pmid=23776378 |pmc=3681190 |doi=10.2147/TACG.S8873 |url=}}</ref>
* [[Point mutation|Substitution of a single amino acid]] (40%)
* Alter RNA processing including [[Nonsense mutation|nonsense]], [[Frameshift mutation|frameshift]] and missplicing (36%)
* Large rearrangements of [[Cystic fibrosis transmembrane conductance regulator|CFTR]] (3%)
* [[Promoter|Promoter regions]] (1%)
* Neutral variants (14%)
* The effect of the remaining 6% is unclear.
*Children who [[Inherited|inherit]] one [[Mutation|mutated]] [[CFTR (gene)|CFTR gene]] and one normal [[CFTR (gene)|CFTR gene]] are "CF [[Carrier|carriers]]". CF [[Carrier|carriers]] usually have no symptoms of cystic fibrosis but they can pass the [[Mutation|mutated]] [[CFTR (gene)|CFTR gene]] to their children.<ref name="urlCystic Fibrosis - National Library of Medicine - PubMed Health">{{cite web |url=https://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0063023/ |title=Cystic Fibrosis - National Library of Medicine - PubMed Health |format= |work= |accessdate=}}</ref>


This mutation accounts for 70% of cystic fibrosis worldwide and 90% of cases in the United States. There are over 1,400 other mutations that can produce cystic fibrosis, however. In Caucasian populations, the frequency of mutations is as follows:<ref name="table">''Prevalence of ΔF508, G551D, G542X, R553X mutations among cystic fibrosis patients in the North of Brazil.'' Brazilian Journal of Medical and Biological Research 2005; 38:11–15. PMID 15665983</ref>
[[Image:CFTR.jpg|thumb|left|350px|'''CFTR protein -''' Molecular structure of the CFTR protein Source: Wikimedia Commons<ref name="urlFile:CFTR.jpg - Wikimedia Commons">{{cite web |url=https://commons.wikimedia.org/wiki/File:CFTR.jpg |title=File:CFTR.jpg - Wikimedia Commons |format= |work= |accessdate=}}</ref>]]
{{entête tableau charte alignement|left}}<noinclude></noinclude>
 
<br style="clear:left" />
 
In Caucasian populations, the frequency of [[Mutation|mutations]] is as follows:<ref name="table">''Prevalence of ΔF508, G551D, G542X, R553X mutations among cystic fibrosis patients in the North of Brazil.'' Brazilian Journal of Medical and Biological Research 2005; 38:11–15. PMID 15665983</ref>{{entête tableau charte alignement|left}}<noinclude></noinclude>
! Mutation
! Mutation
! Frequency<br/>worldwide
! Frequency<br />worldwide
|-----
|-----
| ΔF508
| ΔF508
| 66.0%
| 66.0%
|-{{ligne grise}}
|-
| G542X
| G542X
| 2.4%
| 2.4%
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| G551D
| G551D
| 1.6%
| 1.6%
|-{{ligne grise}}
|-
| N1303K
| N1303K
| 1.3%
| 1.3%
Line 42: Line 83:
| 1.2%
| 1.2%
|}
|}
<br style="clear:left" />
There are several mechanisms by which these mutations cause problems with the CFTR protein. ΔF508, for instance, creates a protein that does not [[Protein folding|fold]] normally and is degraded by the cell. Several mutations, which are common in the Ashkenazi Jewish population, result in proteins that are too short because [[Translation (genetics)|production]] is ended prematurely. Less common mutations produce proteins that do not use energy normally, do not allow chloride to cross the membrane appropriately, or are degraded at a faster rate than normal. Mutations may also lead to fewer copies of the CFTR protein being produced.
[[Image:Mucoviscidose.PNG|thumb|left|300px|The location of the CFTR gene on chromosome 7| Images courtesy of Professor Peter Anderson DVM PhD and published with permission © PEIR, University of Alabama at Birmingham, Department of Pathology<ref>[http://www.peir.net]</ref>]]
Structurally, CFTR is a type of gene known as an [[ATP-binding cassette transporter genes|ABC gene]]. Its protein possesses two [[ATP hydrolysis|ATP-hydrolyzing]] [[Structural domain|domains]] which allows the protein to use [[energy]] in the form of [[Adenosine triphosphate|ATP]]. It also contains two domains comprised of 6 [[Alpha helix|alpha helices]] apiece, which allow the protein to cross the cell membrane. A regulatory [[binding site]] on the protein allows activation by [[phosphorylation]], mainly by [[cAMP-dependent protein kinase]]. The [[C-terminal end|carboxyl terminal]] of the protein is anchored to the [[cytoskeleton]] by a [[PDZ (biology)|PDZ]] domain interaction.<ref>Short DB, Trotter KW, Reczek D, Kreda SM, Bretscher A, Boucher RC, Stutts MJ, Milgram SL. ''An apical PDZ protein anchors the cystic fibrosis transmembrane conductance regulator to the cytoskeleton.'' J Biol Chem. 1998 Jul 31;273(31):19797-801. PMID 9677412</ref>
<br style="clear:left" />
<br style="clear:left" />


==Associated Conditions==
==Associated Conditions==
* In cystic fibrosis, 98% of men are [[Infertility|infertile]]. The causes of [[aspermia]] include:<ref name="pmid126061852">{{cite journal |vauthors=Ratjen F, Döring G |title=Cystic fibrosis |journal=Lancet |volume=361 |issue=9358 |pages=681–9 |year=2003 |pmid=12606185 |doi=10.1016/S0140-6736(03)12567-6 |url=}}</ref>
** [[Atresia]] or absent [[Vas deferens|vasa deferentia]]
** Abnormal or absent [[Seminal vesicle|seminal vesicles]]


==Gross Pathology==
==Gross Pathology==
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==Microscopic Pathology==
==Microscopic Pathology==
*On microscopic histopathological analysis, [feature1], [feature2], and [feature3] are characteristic findings of [disease name].
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Editor-In-Chief: C. Michael Gibson, M.S., M.D. [1]; Associate Editor(s)-in-Chief: Shaghayegh Habibi, M.D.[2]

Overview

Cystic fibrosis is an autosomal recessive disease that caused by mutations in the cystic fibrosis transmembrane conductance regulator (CFTR) gene. Substitution of a single amino acid is the most common type of CFTR gene mutation. CFTR gene functions as a chloride channel (pumps chloride from the intracellular space to the extracellular space) found on the surface of the epithelial cells. The genetic mutations result in defective transport of chloride, and secondarily sodium and eventually abnormal viscous mucoid secretions mostly in lungs (results in airway surface liquid depletion, decreased mucociliary transport, inflammation and infection) and GI tract (results in reduced volume of pancreatic secretion, pancreatic tissue destruction and fibrosis, malnutrition and poor growth). Infertility due to atresia/absent vasa deferentia and abnormal/absent seminal vesicles is the associated condition of cystic fibrosis.

Pathophysiology

Pathogenesis

 
 
 
Lack of CFTR normal activity
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
Less chloride secretion
 
More sodium absorption
 
 
 
 
 
 
 
 
 
 
 
 
 
 
Less water transport into the epithelial surface layer
 
Excessive sodium and water absorption through the epithelial channel
 
 

Lung involvement in cystic fibrosis

  • In patients with cystic fibrosis abnormal chloride conductance of epithelial cells results in airway surface liquid depletion and decreased mucociliary transport (airway surface liquid is essential to support ciliary function).
  • The consequence of cystic fibrosis is a vicious circle of inflammation, tissue damage and infection.[3]
  • Also, exaggerated, generalized, and prolonged inflammatory response of lungs to bacterial and viral pathogen is observed.
  • The inflammatory response is characterized by neutrophilic dominated airway inflammation which is present even in clinically stable patients and in young infants diagnosed by neonatal screening.[3][4]
  • Breakdown of accumulated neutrophils in the infected lungs of patients with cystic fibrosis leads to the release of large amounts of DNA.
  • Accumulated DNA causes high viscosity of the infected sputum, followed by decreased ciliary transport and function.[5]

Gastrointestinal tract involvement in cystic fibrosis

Pancreatic disease:

Biliary disease:

Genetics

Cystic fibrosis is caused by mutations in the CF transmembrane conductance regulator (CFTR) gene. This gene codes for a chloride transporter regulated by cyclic AMP (cAMP)-dependent phosphorylation. There are almost 2,000 variants of CFTR gene mutations:[4]

CFTR protein - Molecular structure of the CFTR protein Source: Wikimedia Commons[8]


In Caucasian populations, the frequency of mutations is as follows:[9]Template:Entête tableau charte alignement ! Mutation ! Frequency
worldwide |----- | ΔF508 | 66.0% |- | G542X | 2.4% |----- | G551D | 1.6% |- | N1303K | 1.3% |----- | W1282X | 1.2% |}

Associated Conditions

Gross Pathology

Microscopic Pathology

References

  1. National Center for Biotechnology Information (US). Genes and Disease [Internet]. Bethesda (MD): National Center for Biotechnology Information (US); 1998-. Available from: https://www.ncbi.nlm.nih.gov/books/NBK22183/
  2. Voter KZ, Ren CL (2008). "Diagnosis of cystic fibrosis". Clin Rev Allergy Immunol. 35 (3): 100–6. doi:10.1007/s12016-008-8078-x. PMID 18506640.
  3. 3.0 3.1 3.2 Ratjen FA (2009). "Cystic fibrosis: pathogenesis and future treatment strategies". Respir Care. 54 (5): 595–605. PMID 19393104.
  4. 4.0 4.1 4.2 Cutting GR (2015). "Cystic fibrosis genetics: from molecular understanding to clinical application". Nat. Rev. Genet. 16 (1): 45–56. doi:10.1038/nrg3849. PMC 4364438. PMID 25404111.
  5. Konstan MW, Ratjen F (2012). "Effect of dornase alfa on inflammation and lung function: potential role in the early treatment of cystic fibrosis". J. Cyst. Fibros. 11 (2): 78–83. doi:10.1016/j.jcf.2011.10.003. PMC 4090757. PMID 22093951.
  6. 6.0 6.1 Ratjen F, Döring G (2003). "Cystic fibrosis". Lancet. 361 (9358): 681–9. doi:10.1016/S0140-6736(03)12567-6. PMID 12606185.
  7. "Cystic Fibrosis - National Library of Medicine - PubMed Health".
  8. "File:CFTR.jpg - Wikimedia Commons". External link in |title= (help)
  9. Prevalence of ΔF508, G551D, G542X, R553X mutations among cystic fibrosis patients in the North of Brazil. Brazilian Journal of Medical and Biological Research 2005; 38:11–15. PMID 15665983
  10. Ratjen F, Döring G (2003). "Cystic fibrosis". Lancet. 361 (9358): 681–9. doi:10.1016/S0140-6736(03)12567-6. PMID 12606185.


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