SMARCE1: Difference between revisions

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{{Infobox_gene}}
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'''SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1''' is a [[protein]] that in humans is encoded by the ''SMARCE1'' [[gene]].<ref name="pmid9435219">{{cite journal | vauthors = Wang W, Chi T, Xue Y, Zhou S, Kuo A, Crabtree GR | title = Architectural DNA binding by a high-mobility-group/kinesin-like subunit in mammalian SWI/SNF-related complexes | journal = Proceedings of the National Academy of Sciences of the United States of America | volume = 95 | issue = 2 | pages = 492–8 | date = Jan 1998 | pmid = 9435219 | pmc = 18447 | doi = 10.1073/pnas.95.2.492 }}</ref><ref name="entrez">{{cite web | title = Entrez Gene: SMARCE1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1| url = https://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=6605| accessdate = }}</ref>
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| require_manual_inspection = no
| update_protein_box = yes
| update_summary = yes
| update_citations = yes
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<!-- The GNF_Protein_box is automatically maintained by Protein Box Bot.  See Template:PBB_Controls to Stop updates. -->
== Function ==
{{GNF_Protein_box
| image =
| image_source =
| PDB =
| Name = SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
| HGNCid = 11109
| Symbol = SMARCE1
| AltSymbols =; BAF57
| OMIM = 603111
| ECnumber = 
| Homologene = 37727
| MGIid = 1927347
| Function = {{GNF_GO|id=GO:0003677 |text = DNA binding}} {{GNF_GO|id=GO:0003682 |text = chromatin binding}} {{GNF_GO|id=GO:0003713 |text = transcription coactivator activity}} {{GNF_GO|id=GO:0005515 |text = protein binding}} {{GNF_GO|id=GO:0008080 |text = N-acetyltransferase activity}}
| Component = {{GNF_GO|id=GO:0000228 |text = nuclear chromosome}} {{GNF_GO|id=GO:0005634 |text = nucleus}} {{GNF_GO|id=GO:0017053 |text = transcriptional repressor complex}}
| Process = {{GNF_GO|id=GO:0006337 |text = nucleosome disassembly}} {{GNF_GO|id=GO:0006357 |text = regulation of transcription from RNA polymerase II promoter}} {{GNF_GO|id=GO:0016568 |text = chromatin modification}} {{GNF_GO|id=GO:0045892 |text = negative regulation of transcription, DNA-dependent}}
| Orthologs = {{GNF_Ortholog_box
    | Hs_EntrezGene = 6605
    | Hs_Ensembl = 
    | Hs_RefseqProtein = NP_003070
    | Hs_RefseqmRNA = NM_003079
    | Hs_GenLoc_db = 
    | Hs_GenLoc_chr = 
    | Hs_GenLoc_start = 
    | Hs_GenLoc_end = 
    | Hs_Uniprot = 
    | Mm_EntrezGene = 57376
    | Mm_Ensembl = ENSMUSG00000037935
    | Mm_RefseqmRNA = NM_020618
    | Mm_RefseqProtein = NP_065643
    | Mm_GenLoc_db = 
    | Mm_GenLoc_chr = 11
    | Mm_GenLoc_start = 99025137
    | Mm_GenLoc_end = 99047107
    | Mm_Uniprot = O54941
  }}
}}
'''SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1''', also known as '''SMARCE1''', is a human [[gene]].<ref name="entrez">{{cite web | title = Entrez Gene: SMARCE1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1| url = http://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=6605| accessdate = }}</ref>


<!-- The PBB_Summary template is automatically maintained by Protein Box Bot.  See Template:PBB_Controls to Stop updates. -->
The protein encoded by this gene is part of the large ATP-dependent chromatin remodeling complex [[SWI/SNF]], which is required for transcriptional activation of genes normally repressed by chromatin. The encoded protein, either alone or when in the SWI/SNF complex, can bind to 4-way junction DNA, which is thought to mimic the topology of DNA as it enters or exits the nucleosome. The protein contains a DNA-binding HMG domain, but disruption of this domain does not abolish the DNA-binding or nucleosome-displacement activities of the SWI/SNF complex. Unlike most of the SWI/SNF complex proteins, this protein has no yeast counterpart.<ref name="entrez" />
{{PBB_Summary
| section_title =
| summary_text = The protein encoded by this gene is part of the large ATP-dependent chromatin remodeling complex SWI/SNF, which is required for transcriptional activation of genes normally repressed by chromatin. The encoded protein, either alone or when in the SWI/SNF complex, can bind to 4-way junction DNA, which is thought to mimic the topology of DNA as it enters or exits the nucleosome. The protein contains a DNA-binding HMG domain, but disruption of this domain does not abolish the DNA-binding or nucleosome-displacement activities of the SWI/SNF complex. Unlike most of the SWI/SNF complex proteins, this protein has no yeast counterpart.<ref name="entrez">{{cite web | title = Entrez Gene: SMARCE1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1| url = http://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=6605| accessdate = }}</ref>
}}


==References==
== Interactions ==
{{reflist|2}}
 
==Further reading==
SMARCE1 has been shown to [[Protein-protein interaction|interact]] with [[Estrogen receptor alpha]],<ref name=pmid12145209>{{cite journal | vauthors = Belandia B, Orford RL, Hurst HC, Parker MG | title = Targeting of SWI/SNF chromatin remodelling complexes to estrogen-responsive genes | journal = The EMBO Journal | volume = 21 | issue = 15 | pages = 4094–103 | date = Aug 2002 | pmid = 12145209 | pmc = 126156 | doi = 10.1093/emboj/cdf412 }}</ref> [[SMARCB1]]<ref name=pmid8895581>{{cite journal | vauthors = Wang W, Côté J, Xue Y, Zhou S, Khavari PA, Biggar SR, Muchardt C, Kalpana GV, Goff SP, Yaniv M, Workman JL, Crabtree GR | title = Purification and biochemical heterogeneity of the mammalian SWI-SNF complex | journal = The EMBO Journal | volume = 15 | issue = 19 | pages = 5370–82 | date = Oct 1996 | pmid = 8895581 | pmc = 452280 }}</ref><ref name=pmid9845365>{{cite journal | vauthors = Zhao K, Wang W, Rando OJ, Xue Y, Swiderek K, Kuo A, Crabtree GR | title = Rapid and phosphoinositol-dependent binding of the SWI/SNF-like BAF complex to chromatin after T lymphocyte receptor signaling | journal = Cell | volume = 95 | issue = 5 | pages = 625–36 | date = Nov 1998 | pmid = 9845365 | doi = 10.1016/S0092-8674(00)81633-5 }}</ref> and [[SMARCA4]].<ref name=pmid8895581/><ref name=pmid9845365/>
 
== References ==
{{reflist}}
 
== Further reading ==
{{refbegin | 2}}
{{refbegin | 2}}
{{PBB_Further_reading
* {{cite journal | vauthors = Martens JA, Winston F | title = Recent advances in understanding chromatin remodeling by Swi/Snf complexes | journal = Current Opinion in Genetics & Development | volume = 13 | issue = 2 | pages = 136–42 | date = Apr 2003 | pmid = 12672490 | doi = 10.1016/S0959-437X(03)00022-4 }}
| citations =
* {{cite journal | vauthors = Wang W, Côté J, Xue Y, Zhou S, Khavari PA, Biggar SR, Muchardt C, Kalpana GV, Goff SP, Yaniv M, Workman JL, Crabtree GR | title = Purification and biochemical heterogeneity of the mammalian SWI-SNF complex | journal = The EMBO Journal | volume = 15 | issue = 19 | pages = 5370–82 | date = Oct 1996 | pmid = 8895581 | pmc = 452280 | doi =  }}
*{{cite journal | author=Martens JA, Winston F |title=Recent advances in understanding chromatin remodeling by Swi/Snf complexes. |journal=Curr. Opin. Genet. Dev. |volume=13 |issue= 2 |pages= 136-42 |year= 2003 |pmid= 12672490 |doi= }}
* {{cite journal | vauthors = Cho H, Orphanides G, Sun X, Yang XJ, Ogryzko V, Lees E, Nakatani Y, Reinberg D | title = A human RNA polymerase II complex containing factors that modify chromatin structure | journal = Molecular and Cellular Biology | volume = 18 | issue = 9 | pages = 5355–63 | date = Sep 1998 | pmid = 9710619 | pmc = 109120 | doi =  }}
*{{cite journal | author=Wang W, Côté J, Xue Y, ''et al.'' |title=Purification and biochemical heterogeneity of the mammalian SWI-SNF complex. |journal=EMBO J. |volume=15 |issue= 19 |pages= 5370-82 |year= 1996 |pmid= 8895581 |doi=  }}
* {{cite journal | vauthors = Phelan ML, Sif S, Narlikar GJ, Kingston RE | title = Reconstitution of a core chromatin remodeling complex from SWI/SNF subunits | journal = Molecular Cell | volume = 3 | issue = 2 | pages = 247–53 | date = Feb 1999 | pmid = 10078207 | doi = 10.1016/S1097-2765(00)80315-9 }}
*{{cite journal  | author=Wang W, Chi T, Xue Y, ''et al.'' |title=Architectural DNA binding by a high-mobility-group/kinesin-like subunit in mammalian SWI/SNF-related complexes. |journal=Proc. Natl. Acad. Sci. U.S.A. |volume=95 |issue= 2 |pages= 492-8 |year= 1998 |pmid= 9435219 |doi=  }}
* {{cite journal | vauthors = Xue Y, Canman JC, Lee CS, Nie Z, Yang D, Moreno GT, Young MK, Salmon ED, Wang W | title = The human SWI/SNF-B chromatin-remodeling complex is related to yeast rsc and localizes at kinetochores of mitotic chromosomes | journal = Proceedings of the National Academy of Sciences of the United States of America | volume = 97 | issue = 24 | pages = 13015–20 | date = Nov 2000 | pmid = 11078522 | pmc = 27170 | doi = 10.1073/pnas.240208597 }}
*{{cite journal | author=Cho H, Orphanides G, Sun X, ''et al.'' |title=A human RNA polymerase II complex containing factors that modify chromatin structure. |journal=Mol. Cell. Biol. |volume=18 |issue= 9 |pages= 5355-63 |year= 1998 |pmid= 9710619 |doi=  }}
* {{cite journal | vauthors = Decristofaro MF, Betz BL, Rorie CJ, Reisman DN, Wang W, Weissman BE | title = Characterization of SWI/SNF protein expression in human breast cancer cell lines and other malignancies | journal = Journal of Cellular Physiology | volume = 186 | issue = 1 | pages = 136–45 | date = Jan 2001 | pmid = 11147808 | doi = 10.1002/1097-4652(200101)186:1<136::AID-JCP1010>3.0.CO;2-4 }}
*{{cite journal | author=Phelan ML, Sif S, Narlikar GJ, Kingston RE |title=Reconstitution of a core chromatin remodeling complex from SWI/SNF subunits. |journal=Mol. Cell |volume=3 |issue= 2 |pages= 247-53 |year= 1999 |pmid= 10078207 |doi= }}
* {{cite journal | vauthors = Simpson JC, Wellenreuther R, Poustka A, Pepperkok R, Wiemann S | title = Systematic subcellular localization of novel proteins identified by large-scale cDNA sequencing | journal = EMBO Reports | volume = 1 | issue = 3 | pages = 287–92 | date = Sep 2000 | pmid = 11256614 | pmc = 1083732 | doi = 10.1093/embo-reports/kvd058 }}
*{{cite journal | author=Xue Y, Canman JC, Lee CS, ''et al.'' |title=The human SWI/SNF-B chromatin-remodeling complex is related to yeast rsc and localizes at kinetochores of mitotic chromosomes. |journal=Proc. Natl. Acad. Sci. U.S.A. |volume=97 |issue= 24 |pages= 13015-20 |year= 2001 |pmid= 11078522 |doi= 10.1073/pnas.240208597 }}
* {{cite journal | vauthors = Kato H, Tjernberg A, Zhang W, Krutchinsky AN, An W, Takeuchi T, Ohtsuki Y, Sugano S, de Bruijn DR, Chait BT, Roeder RG | title = SYT associates with human SNF/SWI complexes and the C-terminal region of its fusion partner SSX1 targets histones | journal = The Journal of Biological Chemistry | volume = 277 | issue = 7 | pages = 5498–505 | date = Feb 2002 | pmid = 11734557 | doi = 10.1074/jbc.M108702200 }}
*{{cite journal | author=Decristofaro MF, Betz BL, Rorie CJ, ''et al.'' |title=Characterization of SWI/SNF protein expression in human breast cancer cell lines and other malignancies. |journal=J. Cell. Physiol. |volume=186 |issue= 1 |pages= 136-45 |year= 2001 |pmid= 11147808 |doi= 10.1002/1097-4652(200101)186:1<136::AID-JCP1010>3.0.CO;2-4 }}
* {{cite journal | vauthors = Chi TH, Wan M, Zhao K, Taniuchi I, Chen L, Littman DR, Crabtree GR | title = Reciprocal regulation of CD4/CD8 expression by SWI/SNF-like BAF complexes | journal = Nature | volume = 418 | issue = 6894 | pages = 195–9 | date = Jul 2002 | pmid = 12110891 | doi = 10.1038/nature00876 }}
*{{cite journal | author=Simpson JC, Wellenreuther R, Poustka A, ''et al.'' |title=Systematic subcellular localization of novel proteins identified by large-scale cDNA sequencing. |journal=EMBO Rep. |volume=1 |issue= 3 |pages= 287-92 |year= 2001 |pmid= 11256614 |doi= 10.1093/embo-reports/kvd058 }}
* {{cite journal | vauthors = Belandia B, Orford RL, Hurst HC, Parker MG | title = Targeting of SWI/SNF chromatin remodelling complexes to estrogen-responsive genes | journal = The EMBO Journal | volume = 21 | issue = 15 | pages = 4094–103 | date = Aug 2002 | pmid = 12145209 | pmc = 126156 | doi = 10.1093/emboj/cdf412 }}
*{{cite journal | author=Kato H, Tjernberg A, Zhang W, ''et al.'' |title=SYT associates with human SNF/SWI complexes and the C-terminal region of its fusion partner SSX1 targets histones. |journal=J. Biol. Chem. |volume=277 |issue= 7 |pages= 5498-505 |year= 2002 |pmid= 11734557 |doi= 10.1074/jbc.M108702200 }}
* {{cite journal | vauthors = Battaglioli E, Andrés ME, Rose DW, Chenoweth JG, Rosenfeld MG, Anderson ME, Mandel G | title = REST repression of neuronal genes requires components of the hSWI.SNF complex | journal = The Journal of Biological Chemistry | volume = 277 | issue = 43 | pages = 41038–45 | date = Oct 2002 | pmid = 12192000 | doi = 10.1074/jbc.M205691200 }}
*{{cite journal | author=Chi TH, Wan M, Zhao K, ''et al.'' |title=Reciprocal regulation of CD4/CD8 expression by SWI/SNF-like BAF complexes. |journal=Nature |volume=418 |issue= 6894 |pages= 195-9 |year= 2002 |pmid= 12110891 |doi= 10.1038/nature00876 }}
* {{cite journal | vauthors = Baker KM, Wei G, Schaffner AE, Ostrowski MC | title = Ets-2 and components of mammalian SWI/SNF form a repressor complex that negatively regulates the BRCA1 promoter | journal = The Journal of Biological Chemistry | volume = 278 | issue = 20 | pages = 17876–84 | date = May 2003 | pmid = 12637547 | doi = 10.1074/jbc.M209480200 }}
*{{cite journal | author=Belandia B, Orford RL, Hurst HC, Parker MG |title=Targeting of SWI/SNF chromatin remodelling complexes to estrogen-responsive genes. |journal=EMBO J. |volume=21 |issue= 15 |pages= 4094-103 |year= 2002 |pmid= 12145209 |doi= }}
* {{cite journal | vauthors = Kitagawa H, Fujiki R, Yoshimura K, Mezaki Y, Uematsu Y, Matsui D, Ogawa S, Unno K, Okubo M, Tokita A, Nakagawa T, Ito T, Ishimi Y, Nagasawa H, Matsumoto T, Yanagisawa J, Kato S | title = The chromatin-remodeling complex WINAC targets a nuclear receptor to promoters and is impaired in Williams syndrome | journal = Cell | volume = 113 | issue = 7 | pages = 905–17 | date = Jun 2003 | pmid = 12837248 | doi = 10.1016/S0092-8674(03)00436-7 }}
*{{cite journal | author=Battaglioli E, Andrés ME, Rose DW, ''et al.'' |title=REST repression of neuronal genes requires components of the hSWI.SNF complex. |journal=J. Biol. Chem. |volume=277 |issue= 43 |pages= 41038-45 |year= 2002 |pmid= 12192000 |doi= 10.1074/jbc.M205691200 }}
* {{cite journal | vauthors = Hsiao PW, Fryer CJ, Trotter KW, Wang W, Archer TK | title = BAF60a mediates critical interactions between nuclear receptors and the BRG1 chromatin-remodeling complex for transactivation | journal = Molecular and Cellular Biology | volume = 23 | issue = 17 | pages = 6210–20 | date = Sep 2003 | pmid = 12917342 | pmc = 180928 | doi = 10.1128/MCB.23.17.6210-6220.2003 }}
*{{cite journal | author=Strausberg RL, Feingold EA, Grouse LH, ''et al.'' |title=Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. |journal=Proc. Natl. Acad. Sci. U.S.A. |volume=99 |issue= 26 |pages= 16899-903 |year= 2003 |pmid= 12477932 |doi= 10.1073/pnas.242603899 }}
* {{cite journal | vauthors = Wu K, Bottazzi ME, de la Fuente C, Deng L, Gitlin SD, Maddukuri A, Dadgar S, Li H, Vertes A, Pumfery A, Kashanchi F | title = Protein profile of tax-associated complexes | journal = The Journal of Biological Chemistry | volume = 279 | issue = 1 | pages = 495–508 | date = Jan 2004 | pmid = 14530271 | doi = 10.1074/jbc.M310069200 }}
*{{cite journal  | author=Baker KM, Wei G, Schaffner AE, Ostrowski MC |title=Ets-2 and components of mammalian SWI/SNF form a repressor complex that negatively regulates the BRCA1 promoter. |journal=J. Biol. Chem. |volume=278 |issue= 20 |pages= 17876-84 |year= 2003 |pmid= 12637547 |doi= 10.1074/jbc.M209480200 }}
* {{cite journal | vauthors = Millar JK, Christie S, Porteous DJ | title = Yeast two-hybrid screens implicate DISC1 in brain development and function | journal = Biochemical and Biophysical Research Communications | volume = 311 | issue = 4 | pages = 1019–25 | date = Nov 2003 | pmid = 14623284 | doi = 10.1016/j.bbrc.2003.10.101 }}
*{{cite journal | author=Kitagawa H, Fujiki R, Yoshimura K, ''et al.'' |title=The chromatin-remodeling complex WINAC targets a nuclear receptor to promoters and is impaired in Williams syndrome. |journal=Cell |volume=113 |issue= 7 |pages= 905-17 |year= 2003 |pmid= 12837248 |doi= }}
*{{cite journal | author=Hsiao PW, Fryer CJ, Trotter KW, ''et al.'' |title=BAF60a mediates critical interactions between nuclear receptors and the BRG1 chromatin-remodeling complex for transactivation. |journal=Mol. Cell. Biol. |volume=23 |issue= 17 |pages= 6210-20 |year= 2003 |pmid= 12917342 |doi= }}
*{{cite journal | author=Wu K, Bottazzi ME, de la Fuente C, ''et al.'' |title=Protein profile of tax-associated complexes. |journal=J. Biol. Chem. |volume=279 |issue= 1 |pages= 495-508 |year= 2004 |pmid= 14530271 |doi= 10.1074/jbc.M310069200 }}
*{{cite journal | author=Millar JK, Christie S, Porteous DJ |title=Yeast two-hybrid screens implicate DISC1 in brain development and function. |journal=Biochem. Biophys. Res. Commun. |volume=311 |issue= 4 |pages= 1019-25 |year= 2004 |pmid= 14623284 |doi= }}
*{{cite journal  | author=Ota T, Suzuki Y, Nishikawa T, ''et al.'' |title=Complete sequencing and characterization of 21,243 full-length human cDNAs. |journal=Nat. Genet. |volume=36 |issue= 1 |pages= 40-5 |year= 2004 |pmid= 14702039 |doi= 10.1038/ng1285 }}
}}
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Latest revision as of 06:40, 11 September 2017

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Identifiers
Aliases
External IDsGeneCards: [1]
Orthologs
SpeciesHumanMouse
Entrez

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Ensembl

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UniProt

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RefSeq (mRNA)

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RefSeq (protein)

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Location (UCSC)n/an/a
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Wikidata
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SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 is a protein that in humans is encoded by the SMARCE1 gene.[1][2]

Function

The protein encoded by this gene is part of the large ATP-dependent chromatin remodeling complex SWI/SNF, which is required for transcriptional activation of genes normally repressed by chromatin. The encoded protein, either alone or when in the SWI/SNF complex, can bind to 4-way junction DNA, which is thought to mimic the topology of DNA as it enters or exits the nucleosome. The protein contains a DNA-binding HMG domain, but disruption of this domain does not abolish the DNA-binding or nucleosome-displacement activities of the SWI/SNF complex. Unlike most of the SWI/SNF complex proteins, this protein has no yeast counterpart.[2]

Interactions

SMARCE1 has been shown to interact with Estrogen receptor alpha,[3] SMARCB1[4][5] and SMARCA4.[4][5]

References

  1. ↑ Wang W, Chi T, Xue Y, Zhou S, Kuo A, Crabtree GR (Jan 1998). "Architectural DNA binding by a high-mobility-group/kinesin-like subunit in mammalian SWI/SNF-related complexes". Proceedings of the National Academy of Sciences of the United States of America. 95 (2): 492–8. doi:10.1073/pnas.95.2.492. PMC 18447. PMID 9435219.
  2. ↑ 2.0 2.1 "Entrez Gene: SMARCE1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1".
  3. ↑ Belandia B, Orford RL, Hurst HC, Parker MG (Aug 2002). "Targeting of SWI/SNF chromatin remodelling complexes to estrogen-responsive genes". The EMBO Journal. 21 (15): 4094–103. doi:10.1093/emboj/cdf412. PMC 126156. PMID 12145209.
  4. ↑ 4.0 4.1 Wang W, Côté J, Xue Y, Zhou S, Khavari PA, Biggar SR, Muchardt C, Kalpana GV, Goff SP, Yaniv M, Workman JL, Crabtree GR (Oct 1996). "Purification and biochemical heterogeneity of the mammalian SWI-SNF complex". The EMBO Journal. 15 (19): 5370–82. PMC 452280. PMID 8895581.
  5. ↑ 5.0 5.1 Zhao K, Wang W, Rando OJ, Xue Y, Swiderek K, Kuo A, Crabtree GR (Nov 1998). "Rapid and phosphoinositol-dependent binding of the SWI/SNF-like BAF complex to chromatin after T lymphocyte receptor signaling". Cell. 95 (5): 625–36. doi:10.1016/S0092-8674(00)81633-5. PMID 9845365.

Further reading

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