HM13: Difference between revisions

Jump to navigation Jump to search
VisualWikitext
WikiBot (talk | contribs)
Bots, Bureaucrats, bureaucrats, interwiki, nocaptcha, Administrators
57,550 edits
m Robot: Automated text replacement (-{{WikiDoc Cardiology Network Infobox}} +, -<references /> +{{reflist|2}}, -{{reflist}} +{{reflist|2}})
 
 
Line 1: Line 1:
<!-- The PBB_Controls template provides controls for Protein Box Bot, please see Template:PBB_Controls for details. -->
{{Infobox_gene}}
{{PBB_Controls
'''Minor histocompatibility antigen H13''' is a [[protein]] that in humans is encoded by the ''HM13'' [[gene]].<ref name="pmid12077416">{{cite journal |vauthors=Weihofen A, Binns K, Lemberg MK, Ashman K, Martoglio B | title = Identification of signal peptide peptidase, a presenilin-type aspartic protease | journal = Science | volume = 296 | issue = 5576 | pages = 2215–8 |date=Jun 2002 | pmid = 12077416 | pmc =  | doi = 10.1126/science.1070925 }}</ref><ref name="pmid14704149">{{cite journal |vauthors=Nyborg AC, Kornilova AY, Jansen K, Ladd TB, Wolfe MS, Golde TE | title = Signal peptide peptidase forms a homodimer that is labeled by an active site-directed gamma-secretase inhibitor | journal = J Biol Chem | volume = 279 | issue = 15 | pages = 15153–60 |date=Apr 2004 | pmid = 14704149 | pmc =  | doi = 10.1074/jbc.M309305200 }}</ref><ref name="entrez">{{cite web | title = Entrez Gene: HM13 histocompatibility (minor) 13| url = https://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=81502| accessdate = }}</ref>
| update_page = yes
| require_manual_inspection = no
| update_protein_box = yes
| update_summary = yes
| update_citations = yes
}}


<!-- The GNF_Protein_box is automatically maintained by Protein Box Bot.  See Template:PBB_Controls to Stop updates. -->
== Function ==
{{GNF_Protein_box
| image =
| image_source =
| PDB =
| Name = Histocompatibility (minor) 13
| HGNCid = 16435
| Symbol = HM13
| AltSymbols =; IMP1; H13; IMPAS; MSTP086; PSENL3; PSL3; SPP; dJ324O17.1
| OMIM = 607106
| ECnumber = 
| Homologene = 7749
| MGIid = 95886
| Function = {{GNF_GO|id=GO:0005515 |text = protein binding}} {{GNF_GO|id=GO:0008233 |text = peptidase activity}} {{GNF_GO|id=GO:0008717 |text = D-alanyl-D-alanine endopeptidase activity}}
| Component = {{GNF_GO|id=GO:0005783 |text = endoplasmic reticulum}} {{GNF_GO|id=GO:0016020 |text = membrane}} {{GNF_GO|id=GO:0016021 |text = integral to membrane}}
| Process =
| Orthologs = {{GNF_Ortholog_box
    | Hs_EntrezGene = 81502
    | Hs_Ensembl = ENSG00000101294
    | Hs_RefseqProtein = NP_110416
    | Hs_RefseqmRNA = NM_030789
    | Hs_GenLoc_db = 
    | Hs_GenLoc_chr = 20
    | Hs_GenLoc_start = 29565892
    | Hs_GenLoc_end = 29621031
    | Hs_Uniprot = Q8TCT9
    | Mm_EntrezGene = 14950
    | Mm_Ensembl = ENSMUSG00000019188
    | Mm_RefseqmRNA = NM_010376
    | Mm_RefseqProtein = NP_034506
    | Mm_GenLoc_db = 
    | Mm_GenLoc_chr = 2
    | Mm_GenLoc_start = 152360929
    | Mm_GenLoc_end = 152398265
    | Mm_Uniprot = Q3TXP0
  }}
}}
'''Histocompatibility (minor) 13''', also known as '''HM13''', is a human [[gene]].<ref name="entrez">{{cite web | title = Entrez Gene: HM13 histocompatibility (minor) 13| url = http://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=81502| accessdate = }}</ref>


<!-- The PBB_Summary template is automatically maintained by Protein Box Bot. See Template:PBB_Controls to Stop updates. -->
The minor histocompatibility antigen 13 is a nonamer peptide that originates from a protein encoded by the ''H13'' gene.<ref name="entrez2">{{cite web | title = Entrez Gene: H13 histocompatibility (minor) 13| url = https://www.ncbi.nlm.nih.gov/gene/14950| accessdate = }}</ref><ref name="pmid5340356">{{cite journal |vauthors=Snell GD, Cudkowicz G, Bunker HP | title = Histocompatibility genes of mice. VII. H-13, a new histocompatibility locus in the fifth linkage group | journal = Transplantation | volume = 5 | issue = 3 | pages = 492–503 |date=Jun 1967 | pmid = 5340356| pmc =  | doi =10.1097/00007890-196705000-00011  }}</ref> The peptide is generated by the [[cytosol]] by the [[proteasome]], enters the [[endoplasmic reticulum]] (ER) lumen by the [[transporter associated with antigen processing]] (TAP) and is presented on the cell surface on H2-D<sup>b</sup> major histocompatibility anigen I ([[MHC I]]) molecules. The alloreactivity, which leads to [[transplant rejection]] in mice, is conferred by Val/Ile [[Polymorphism (biology)|polymorphism]] in the ‘SSV(V/I)GVWYL’ peptide.<ref name="pmid9354467">{{cite journal |vauthors=Mendoza LM, Paz P, Zuberi A, Christianson G, Roopenian D, Shastri N | title = Minors held by majors: the H13 minor histocompatibility locus defined as a peptide/MHC class I complex | journal = Immunity | volume = 7 | issue = 4 | pages = 461–72 |date=Oct 1997 | pmid = 9354467 | pmc = | doi = 10.1016/S1074-7613(00)80368-4 }}</ref> The orthologue gene in humans is called HM13. If a related polymorphism exists, and if the HM13 serves as a [[Minor histocompatibility antigen]], however, remains to be addressed.
{{PBB_Summary
 
| section_title =  
The protein encoded by the M13/HM13 gene is the [[signal peptide peptidase]] (SPP), an ER-resident [[intramembrane protease]].<ref name="pmid12077416" />
| summary_text = The protein encoded by this gene, which localizes to the endoplasmic reticulum, catalyzes intramembrane proteolysis of some signal peptides after they have been cleaved from a preprotein. This activity is required to generate signal sequence-derived human lymphocyte antigen-E epitopes that are recognized by the immune system, and to process hepatitis C virus core protein. The encoded protein is an integral membrane protein with sequence motifs characteristic of the presenilin-type aspartic proteases. Multiple transcript variants encoding several different isoforms have been found for this gene.<ref name="entrez">{{cite web | title = Entrez Gene: HM13 histocompatibility (minor) 13| url = http://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=81502| accessdate = }}</ref>
SPP localizes to the [[endoplasmic reticulum]], catalyzes intramembrane proteolysis of some signal peptides after they have been cleaved from a preprotein. This activity is required to generate signal sequence-derived human lymphocyte antigen-E epitopes that are recognized by the immune system, and to process hepatitis C virus core protein. The encoded protein is an integral membrane protein with sequence motifs characteristic of the presenilin-type aspartic proteases. Multiple transcript variants encoding several different isoforms have been found for this gene.<ref name="entrez" />
}}


==References==
==References==
{{reflist|2}}
{{reflist}}
 
==Further reading==
==Further reading==
{{refbegin | 2}}
{{refbegin | 2}}
{{PBB_Further_reading
*{{cite journal   |vauthors=Lemberg MK, Bland FA, Weihofen A, etal |title=Intramembrane proteolysis of signal peptides: an essential step in the generation of HLA-E epitopes |journal=J. Immunol. |volume=167 |issue= 11 |pages= 6441–6 |year= 2002 |pmid= 11714810 |doi=  10.4049/jimmunol.167.11.6441}}
| citations =
*{{cite journal   |vauthors=Deloukas P, Matthews LH, Ashurst J, etal |title=The DNA sequence and comparative analysis of human chromosome 20 |journal=Nature |volume=414 |issue= 6866 |pages= 865–71 |year= 2002 |pmid= 11780052 |doi= 10.1038/414865a }}
*{{cite journal | author=Lemberg MK, Bland FA, Weihofen A, ''et al.'' |title=Intramembrane proteolysis of signal peptides: an essential step in the generation of HLA-E epitopes. |journal=J. Immunol. |volume=167 |issue= 11 |pages= 6441-6 |year= 2002 |pmid= 11714810 |doi=  }}
*{{cite journal  |vauthors=Grigorenko AP, Moliaka YK, Korovaitseva GI, Rogaev EI |title=Novel class of polytopic proteins with domains associated with putative protease activity |journal=Biochemistry Mosc. |volume=67 |issue= 7 |pages= 826–35 |year= 2002 |pmid= 12139484 |doi=10.1023/A:1016365227942 }}
*{{cite journal | author=Deloukas P, Matthews LH, Ashurst J, ''et al.'' |title=The DNA sequence and comparative analysis of human chromosome 20. |journal=Nature |volume=414 |issue= 6866 |pages= 865-71 |year= 2002 |pmid= 11780052 |doi= 10.1038/414865a }}
*{{cite journal  |vauthors=McLauchlan J, Lemberg MK, Hope G, Martoglio B |title=Intramembrane proteolysis promotes trafficking of hepatitis C virus core protein to lipid droplets |journal=EMBO J. |volume=21 |issue= 15 |pages= 3980–8 |year= 2002 |pmid= 12145199 |doi= 10.1093/emboj/cdf414 | pmc=126158 }}
*{{cite journal  | author=Weihofen A, Binns K, Lemberg MK, ''et al.'' |title=Identification of signal peptide peptidase, a presenilin-type aspartic protease. |journal=Science |volume=296 |issue= 5576 |pages= 2215-8 |year= 2002 |pmid= 12077416 |doi= 10.1126/science.1070925 }}
*{{cite journal  |vauthors=Lemberg MK, Martoglio B |title=Requirements for signal peptide peptidase-catalyzed intramembrane proteolysis |journal=Mol. Cell |volume=10 |issue= 4 |pages= 735–44 |year= 2002 |pmid= 12419218 |doi=10.1016/S1097-2765(02)00655-X }}
*{{cite journal  | author=Grigorenko AP, Moliaka YK, Korovaitseva GI, Rogaev EI |title=Novel class of polytopic proteins with domains associated with putative protease activity. |journal=Biochemistry Mosc. |volume=67 |issue= 7 |pages= 826-35 |year= 2003 |pmid= 12139484 |doi=  }}
*{{cite journal   |vauthors=Strausberg RL, Feingold EA, Grouse LH, etal |title=Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences |journal=Proc. Natl. Acad. Sci. U.S.A. |volume=99 |issue= 26 |pages= 16899–903 |year= 2003 |pmid= 12477932 |doi= 10.1073/pnas.242603899 | pmc=139241 }}
*{{cite journal  | author=McLauchlan J, Lemberg MK, Hope G, Martoglio B |title=Intramembrane proteolysis promotes trafficking of hepatitis C virus core protein to lipid droplets. |journal=EMBO J. |volume=21 |issue= 15 |pages= 3980-8 |year= 2002 |pmid= 12145199 |doi= 10.1093/emboj/cdf414 }}
*{{cite journal  |vauthors=Urny J, Hermans-Borgmeyer I, Gercken G, Schaller HC |title=Expression of the presenilin-like signal peptide peptidase (SPP) in mouse adult brain and during development |journal=Gene Expr. Patterns |volume=3 |issue= 5 |pages= 685–91 |year= 2004 |pmid= 12972007 |doi=10.1016/S1567-133X(03)00094-2 }}
*{{cite journal  | author=Lemberg MK, Martoglio B |title=Requirements for signal peptide peptidase-catalyzed intramembrane proteolysis. |journal=Mol. Cell |volume=10 |issue= 4 |pages= 735-44 |year= 2002 |pmid= 12419218 |doi=  }}
*{{cite journal   |vauthors=Lehner B, Semple JI, Brown SE, etal |title=Analysis of a high-throughput yeast two-hybrid system and its use to predict the function of intracellular proteins encoded within the human MHC class III region |journal=Genomics |volume=83 |issue= 1 |pages= 153–67 |year= 2004 |pmid= 14667819 |doi=10.1016/S0888-7543(03)00235-0 }}
*{{cite journal | author=Strausberg RL, Feingold EA, Grouse LH, ''et al.'' |title=Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. |journal=Proc. Natl. Acad. Sci. U.S.A. |volume=99 |issue= 26 |pages= 16899-903 |year= 2003 |pmid= 12477932 |doi= 10.1073/pnas.242603899 }}
*{{cite journal   |vauthors=Ota T, Suzuki Y, Nishikawa T, etal |title=Complete sequencing and characterization of 21,243 full-length human cDNAs |journal=Nat. Genet. |volume=36 |issue= 1 |pages= 40–5 |year= 2004 |pmid= 14702039 |doi= 10.1038/ng1285 }}
*{{cite journal  | author=Urny J, Hermans-Borgmeyer I, Gercken G, Schaller HC |title=Expression of the presenilin-like signal peptide peptidase (SPP) in mouse adult brain and during development. |journal=Gene Expr. Patterns |volume=3 |issue= 5 |pages= 685-91 |year= 2004 |pmid= 12972007 |doi=  }}
*{{cite journal  |vauthors=Moliaka YK, Grigorenko A, Madera D, Rogaev EI |title=Impas 1 possesses endoproteolytic activity against multipass membrane protein substrate cleaving the presenilin 1 holoprotein |journal=FEBS Lett. |volume=557 |issue= 1–3 |pages= 185–92 |year= 2004 |pmid= 14741365 |doi=10.1016/S0014-5793(03)01489-3 }}
*{{cite journal | author=Lehner B, Semple JI, Brown SE, ''et al.'' |title=Analysis of a high-throughput yeast two-hybrid system and its use to predict the function of intracellular proteins encoded within the human MHC class III region. |journal=Genomics |volume=83 |issue= 1 |pages= 153-67 |year= 2004 |pmid= 14667819 |doi=  }}
*{{cite journal   |vauthors=Soares MR, Bisch PM, Campos de Carvalho AC, etal |title=Correlation between conformation and antibody binding: NMR structure of cross-reactive peptides from T. cruzi, human and L. braziliensis |journal=FEBS Lett. |volume=560 |issue= 1–3 |pages= 134–40 |year= 2004 |pmid= 14988012 |doi= 10.1016/S0014-5793(04)00088-2 }}
*{{cite journal | author=Ota T, Suzuki Y, Nishikawa T, ''et al.'' |title=Complete sequencing and characterization of 21,243 full-length human cDNAs. |journal=Nat. Genet. |volume=36 |issue= 1 |pages= 40-5 |year= 2004 |pmid= 14702039 |doi= 10.1038/ng1285 }}
*{{cite journal   |vauthors=Friedmann E, Lemberg MK, Weihofen A, etal |title=Consensus analysis of signal peptide peptidase and homologous human aspartic proteases reveals opposite topology of catalytic domains compared with presenilins |journal=J. Biol. Chem. |volume=279 |issue= 49 |pages= 50790–8 |year= 2005 |pmid= 15385547 |doi= 10.1074/jbc.M407898200 }}
*{{cite journal  | author=Nyborg AC, Kornilova AY, Jansen K, ''et al.'' |title=Signal peptide peptidase forms a homodimer that is labeled by an active site-directed gamma-secretase inhibitor. |journal=J. Biol. Chem. |volume=279 |issue= 15 |pages= 15153-60 |year= 2004 |pmid= 14704149 |doi= 10.1074/jbc.M309305200 }}
*{{cite journal   |vauthors=Gerhard DS, Wagner L, Feingold EA, etal |title=The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC) |journal=Genome Res. |volume=14 |issue= 10B |pages= 2121–7 |year= 2004 |pmid= 15489334 |doi= 10.1101/gr.2596504 | pmc=528928 }}
*{{cite journal  | author=Moliaka YK, Grigorenko A, Madera D, Rogaev EI |title=Impas 1 possesses endoproteolytic activity against multipass membrane protein substrate cleaving the presenilin 1 holoprotein. |journal=FEBS Lett. |volume=557 |issue= 1-3 |pages= 185-92 |year= 2004 |pmid= 14741365 |doi=  }}
*{{cite journal   |vauthors=Otsuki T, Ota T, Nishikawa T, etal |title=Signal sequence and keyword trap in silico for selection of full-length human cDNAs encoding secretion or membrane proteins from oligo-capped cDNA libraries |journal=DNA Res. |volume=12 |issue= 2 |pages= 117–26 |year= 2007 |pmid= 16303743 |doi= 10.1093/dnares/12.2.117 }}
*{{cite journal | author=Soares MR, Bisch PM, Campos de Carvalho AC, ''et al.'' |title=Correlation between conformation and antibody binding: NMR structure of cross-reactive peptides from T. cruzi, human and L. braziliensis. |journal=FEBS Lett. |volume=560 |issue= 1-3 |pages= 134-40 |year= 2004 |pmid= 14988012 |doi= 10.1016/S0014-5793(04)00088-2 }}
*{{cite journal  |vauthors=Urny J, Hermans-Borgmeyer I, Schaller HC |title=Cell-surface expression of a new splice variant of the mouse signal peptide peptidase |journal=Biochim. Biophys. Acta |volume=1759 |issue= 3–4 |pages= 159–65 |year= 2006 |pmid= 16730383 |doi= 10.1016/j.bbaexp.2006.02.007 }}
*{{cite journal | author=Friedmann E, Lemberg MK, Weihofen A, ''et al.'' |title=Consensus analysis of signal peptide peptidase and homologous human aspartic proteases reveals opposite topology of catalytic domains compared with presenilins. |journal=J. Biol. Chem. |volume=279 |issue= 49 |pages= 50790-8 |year= 2005 |pmid= 15385547 |doi= 10.1074/jbc.M407898200 }}
*{{cite journal   |vauthors=Loureiro J, Lilley BN, Spooner E, etal |title=Signal peptide peptidase is required for dislocation from the endoplasmic reticulum |journal=Nature |volume=441 |issue= 7095 |pages= 894–7 |year= 2006 |pmid= 16738546 |doi= 10.1038/nature04830 }}
*{{cite journal | author=Gerhard DS, Wagner L, Feingold EA, ''et al.'' |title=The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). |journal=Genome Res. |volume=14 |issue= 10B |pages= 2121-7 |year= 2004 |pmid= 15489334 |doi= 10.1101/gr.2596504 }}
*{{cite journal   |vauthors=Sato T, Nyborg AC, Iwata N, etal |title=Signal peptide peptidase: biochemical properties and modulation by nonsteroidal antiinflammatory drugs |journal=Biochemistry |volume=45 |issue= 28 |pages= 8649–56 |year= 2006 |pmid= 16834339 |doi= 10.1021/bi060597g }}
*{{cite journal | author=Otsuki T, Ota T, Nishikawa T, ''et al.'' |title=Signal sequence and keyword trap in silico for selection of full-length human cDNAs encoding secretion or membrane proteins from oligo-capped cDNA libraries. |journal=DNA Res. |volume=12 |issue= 2 |pages= 117-26 |year= 2007 |pmid= 16303743 |doi= 10.1093/dnares/12.2.117 }}
*{{cite journal  | author=Urny J, Hermans-Borgmeyer I, Schaller HC |title=Cell-surface expression of a new splice variant of the mouse signal peptide peptidase. |journal=Biochim. Biophys. Acta |volume=1759 |issue= 3-4 |pages= 159-65 |year= 2006 |pmid= 16730383 |doi= 10.1016/j.bbaexp.2006.02.007 }}
*{{cite journal | author=Loureiro J, Lilley BN, Spooner E, ''et al.'' |title=Signal peptide peptidase is required for dislocation from the endoplasmic reticulum. |journal=Nature |volume=441 |issue= 7095 |pages= 894-7 |year= 2006 |pmid= 16738546 |doi= 10.1038/nature04830 }}
*{{cite journal | author=Sato T, Nyborg AC, Iwata N, ''et al.'' |title=Signal peptide peptidase: biochemical properties and modulation by nonsteroidal antiinflammatory drugs. |journal=Biochemistry |volume=45 |issue= 28 |pages= 8649-56 |year= 2006 |pmid= 16834339 |doi= 10.1021/bi060597g }}
}}
{{refend}}
{{refend}}


{{protein-stub}}
 
{{WikiDoc Sources}}
{{gene-20-stub}}

Latest revision as of 13:52, 31 August 2017

VALUE_ERROR (nil)
Identifiers
Aliases
External IDsGeneCards: [1]
Orthologs
SpeciesHumanMouse
Entrez

n/a

n/a

Ensembl

n/a

n/a

UniProt

n/a

n/a

RefSeq (mRNA)

n/a

n/a

RefSeq (protein)

n/a

n/a

Location (UCSC)n/an/a
PubMed searchn/an/a
Wikidata
View/Edit Human

Minor histocompatibility antigen H13 is a protein that in humans is encoded by the HM13 gene.[1][2][3]

Function

The minor histocompatibility antigen 13 is a nonamer peptide that originates from a protein encoded by the H13 gene.[4][5] The peptide is generated by the cytosol by the proteasome, enters the endoplasmic reticulum (ER) lumen by the transporter associated with antigen processing (TAP) and is presented on the cell surface on H2-Db major histocompatibility anigen I (MHC I) molecules. The alloreactivity, which leads to transplant rejection in mice, is conferred by Val/Ile polymorphism in the ‘SSV(V/I)GVWYL’ peptide.[6] The orthologue gene in humans is called HM13. If a related polymorphism exists, and if the HM13 serves as a Minor histocompatibility antigen, however, remains to be addressed.

The protein encoded by the M13/HM13 gene is the signal peptide peptidase (SPP), an ER-resident intramembrane protease.[1] SPP localizes to the endoplasmic reticulum, catalyzes intramembrane proteolysis of some signal peptides after they have been cleaved from a preprotein. This activity is required to generate signal sequence-derived human lymphocyte antigen-E epitopes that are recognized by the immune system, and to process hepatitis C virus core protein. The encoded protein is an integral membrane protein with sequence motifs characteristic of the presenilin-type aspartic proteases. Multiple transcript variants encoding several different isoforms have been found for this gene.[3]

References

  1. ↑ 1.0 1.1 Weihofen A, Binns K, Lemberg MK, Ashman K, Martoglio B (Jun 2002). "Identification of signal peptide peptidase, a presenilin-type aspartic protease". Science. 296 (5576): 2215–8. doi:10.1126/science.1070925. PMID 12077416.
  2. ↑ Nyborg AC, Kornilova AY, Jansen K, Ladd TB, Wolfe MS, Golde TE (Apr 2004). "Signal peptide peptidase forms a homodimer that is labeled by an active site-directed gamma-secretase inhibitor". J Biol Chem. 279 (15): 15153–60. doi:10.1074/jbc.M309305200. PMID 14704149.
  3. ↑ 3.0 3.1 "Entrez Gene: HM13 histocompatibility (minor) 13".
  4. ↑ "Entrez Gene: H13 histocompatibility (minor) 13".
  5. ↑ Snell GD, Cudkowicz G, Bunker HP (Jun 1967). "Histocompatibility genes of mice. VII. H-13, a new histocompatibility locus in the fifth linkage group". Transplantation. 5 (3): 492–503. doi:10.1097/00007890-196705000-00011. PMID 5340356.
  6. ↑ Mendoza LM, Paz P, Zuberi A, Christianson G, Roopenian D, Shastri N (Oct 1997). "Minors held by majors: the H13 minor histocompatibility locus defined as a peptide/MHC class I complex". Immunity. 7 (4): 461–72. doi:10.1016/S1074-7613(00)80368-4. PMID 9354467.

Further reading


Retrieved from "https://www.wikidoc.org/index.php?title=HM13&oldid=1419542"