LYPD3: Difference between revisions

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Latest revision as of 18:14, 2 September 2017

Ly6/PLAUR domain-containing protein 3 is a protein that in humans is encoded by the LYPD3 gene.^[1]^[2]^[3]

References

↑ Wurfel J, Seiter S, Stassar M, Claas A, Klas R, Rosel M, Marhaba R, Savelyeva L, Schwab M, Matzku S, Zoller M (Feb 2001). "Cloning of the human homologue of the metastasis-associated rat C4.4A". Gene. 262 (1–2): 35–41. doi:10.1016/S0378-1119(00)00515-1. PMID 11179665.
↑ Smith BA, Kennedy WJ, Harnden P, Selby PJ, Trejdosiewicz LK, Southgate J (Mar 2001). "Identification of genes involved in human urothelial cell-matrix interactions: implications for the progression pathways of malignant urothelium". Cancer Res. 61 (4): 1678–85. PMID 11245483.
↑ "Entrez Gene: LYPD3 LY6/PLAUR domain containing 3".

Paret C, Hildebrand D, Weitz J, et al. (2007). "C4.4A as a candidate marker in the diagnosis of colorectal cancer". Br. J. Cancer. 97 (8): 1146–56. doi:10.1038/sj.bjc.6604012. PMC 2360445. PMID 17912244.
Kimura K, Wakamatsu A, Suzuki Y, et al. (2006). "Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes". Genome Res. 16 (1): 55–65. doi:10.1101/gr.4039406. PMC 1356129. PMID 16344560.
Otsuki T, Ota T, Nishikawa T, et al. (2007). "Signal sequence and keyword trap in silico for selection of full-length human cDNAs encoding secretion or membrane proteins from oligo-capped cDNA libraries". DNA Res. 12 (2): 117–26. doi:10.1093/dnares/12.2.117. PMID 16303743.
Gerhard DS, Wagner L, Feingold EA, et al. (2004). "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)". Genome Res. 14 (10B): 2121–7. doi:10.1101/gr.2596504. PMC 528928. PMID 15489334.
Suzuki Y, Yamashita R, Shirota M, et al. (2004). "Sequence comparison of human and mouse genes reveals a homologous block structure in the promoter regions". Genome Res. 14 (9): 1711–8. doi:10.1101/gr.2435604. PMC 515316. PMID 15342556.
Grimwood J, Gordon LA, Olsen A, et al. (2004). "The DNA sequence and biology of human chromosome 19". Nature. 428 (6982): 529–35. doi:10.1038/nature02399. PMID 15057824.
Hansen LV, Gårdsvoll H, Nielsen BS, et al. (2004). "Structural analysis and tissue localization of human C4.4A: a protein homologue of the urokinase receptor". Biochem. J. 380 (Pt 3): 845–57. doi:10.1042/BJ20031478. PMC 1224211. PMID 15012588.
Clark HF, Gurney AL, Abaya E, et al. (2003). "The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment". Genome Res. 13 (10): 2265–70. doi:10.1101/gr.1293003. PMC 403697. PMID 12975309.
Fletcher GC, Patel S, Tyson K, et al. (2003). "hAG-2 and hAG-3, human homologues of genes involved in differentiation, are associated with oestrogen receptor-positive breast tumours and interact with metastasis gene C4.4a and dystroglycan". Br. J. Cancer. 88 (4): 579–85. doi:10.1038/sj.bjc.6600740. PMC 2377166. PMID 12592373.
Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. doi:10.1073/pnas.242603899. PMC 139241. PMID 12477932.
Adam PJ, Boyd R, Tyson KL, et al. (2003). "Comprehensive proteomic analysis of breast cancer cell membranes reveals unique proteins with potential roles in clinical cancer". J. Biol. Chem. 278 (8): 6482–9. doi:10.1074/jbc.M210184200. PMID 12477722.

This article on a gene on human chromosome 19 is a stub. You can help Wikipedia by expanding it.

[pmid11179665-1] Wurfel J, Seiter S, Stassar M, Claas A, Klas R, Rosel M, Marhaba R, Savelyeva L, Schwab M, Matzku S, Zoller M (Feb 2001). "Cloning of the human homologue of the metastasis-associated rat C4.4A". Gene. 262 (1–2): 35–41. doi:10.1016/S0378-1119(00)00515-1. PMID 11179665.

[pmid11245483-2] Smith BA, Kennedy WJ, Harnden P, Selby PJ, Trejdosiewicz LK, Southgate J (Mar 2001). "Identification of genes involved in human urothelial cell-matrix interactions: implications for the progression pathways of malignant urothelium". Cancer Res. 61 (4): 1678–85. PMID 11245483.

[entrez-3] "Entrez Gene: LYPD3 LY6/PLAUR domain containing 3".

[1]

[2]

[3]

@@ Line 1: / Line 1: @@
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+'''Ly6/PLAUR domain-containing protein 3''' is a [[protein]] that in humans is encoded by the ''LYPD3'' [[gene]].<ref name="pmid11179665">{{cite journal |vauthors=Wurfel J, Seiter S, Stassar M, Claas A, Klas R, Rosel M, Marhaba R, Savelyeva L, Schwab M, Matzku S, Zoller M | title = Cloning of the human homologue of the metastasis-associated rat C4.4A | journal = Gene | volume = 262 | issue = 1-2 | pages = 35–41 |date=Feb 2001 | pmid = 11179665 | pmc =  | doi =10.1016/S0378-1119(00)00515-1  }}</ref><ref name="pmid11245483">{{cite journal |vauthors=Smith BA, Kennedy WJ, Harnden P, Selby PJ, Trejdosiewicz LK, Southgate J | title = Identification of genes involved in human urothelial cell-matrix interactions: implications for the progression pathways of malignant urothelium | journal = Cancer Res | volume = 61 | issue = 4 | pages = 1678–85 |date=Mar 2001 | pmid = 11245483 | pmc =  | doi =  }}</ref><ref name="entrez">{{cite web | title = Entrez Gene: LYPD3 LY6/PLAUR domain containing 3| url = https://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=27076| accessdate = }}</ref>
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-{{GNF_Protein_box
- | image =
- | image_source =
- | PDB =
- | Name = LY6/PLAUR domain containing 3
- | HGNCid = 24880
- | Symbol = LYPD3
- | AltSymbols =; C4.4A
- | OMIM = 609484
- | ECnumber =
- | Homologene = 8672
- | MGIid = 1919684
-  | GeneAtlas_image1 = PBB_GE_LYPD3_204952_at_tn.png
-  | Function = {{GNF_GO|id=GO:0048503 |text = GPI anchor binding}}
- | Component = {{GNF_GO|id=GO:0016020 |text = membrane}} {{GNF_GO|id=GO:0046658 |text = anchored to plasma membrane}}
- | Process =
- | Orthologs = {{GNF_Ortholog_box
-    | Hs_EntrezGene = 27076
-    | Hs_Ensembl = ENSG00000124466
-    | Hs_RefseqProtein = NP_055215
-    | Hs_RefseqmRNA = NM_014400
-    | Hs_GenLoc_db =
-    | Hs_GenLoc_chr = 19
-    | Hs_GenLoc_start = 48656779
-    | Hs_GenLoc_end = 48661648
-    | Hs_Uniprot = O95274
-    | Mm_EntrezGene = 72434
-    | Mm_Ensembl = ENSMUSG00000057454
-    | Mm_RefseqmRNA = NM_133743
-    | Mm_RefseqProtein = NP_598504
-    | Mm_GenLoc_db =
-    | Mm_GenLoc_chr = 7
-    | Mm_GenLoc_start = 24345293
-    | Mm_GenLoc_end = 24349876
-    | Mm_Uniprot = Q91YK8
-  }}
-}}
-'''LY6/PLAUR domain containing 3''', also known as '''LYPD3''', is a human [[gene]].<ref name="entrez">{{cite web | title = Entrez Gene: LYPD3 LY6/PLAUR domain containing 3| url = http://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=27076| accessdate = }}</ref>
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@@ Line 55: / Line 9: @@
 ==References==
-{{reflist|2}}
+{{reflist}}
 ==Further reading==
 {{refbegin | 2}}
 {{PBB_Further_reading
 | citations =
-*{{cite journal  | author=Paret C, Hildebrand D, Weitz J, ''et al.'' |title=C4.4A as a candidate marker in the diagnosis of colorectal cancer. |journal=Br. J. Cancer |volume=97 |issue= 8 |pages= 1146-56 |year= 2007 |pmid= 17912244 |doi= 10.1038/sj.bjc.6604012 }}
+*{{cite journal   |vauthors=Paret C, Hildebrand D, Weitz J, etal |title=C4.4A as a candidate marker in the diagnosis of colorectal cancer. |journal=Br. J. Cancer |volume=97 |issue= 8 |pages= 1146–56 |year= 2007 |pmid= 17912244 |doi= 10.1038/sj.bjc.6604012  | pmc=2360445 }}
-*{{cite journal  | author=Kimura K, Wakamatsu A, Suzuki Y, ''et al.'' |title=Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. |journal=Genome Res. |volume=16 |issue= 1 |pages= 55-65 |year= 2006 |pmid= 16344560 |doi= 10.1101/gr.4039406 }}
+*{{cite journal   |vauthors=Kimura K, Wakamatsu A, Suzuki Y, etal |title=Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. |journal=Genome Res. |volume=16 |issue= 1 |pages= 55–65 |year= 2006 |pmid= 16344560 |doi= 10.1101/gr.4039406  | pmc=1356129 }}
-*{{cite journal  | author=Otsuki T, Ota T, Nishikawa T, ''et al.'' |title=Signal sequence and keyword trap in silico for selection of full-length human cDNAs encoding secretion or membrane proteins from oligo-capped cDNA libraries. |journal=DNA Res. |volume=12 |issue= 2 |pages= 117-26 |year= 2007 |pmid= 16303743 |doi= 10.1093/dnares/12.2.117 }}
+*{{cite journal   |vauthors=Otsuki T, Ota T, Nishikawa T, etal |title=Signal sequence and keyword trap in silico for selection of full-length human cDNAs encoding secretion or membrane proteins from oligo-capped cDNA libraries. |journal=DNA Res. |volume=12 |issue= 2 |pages= 117–26 |year= 2007 |pmid= 16303743 |doi= 10.1093/dnares/12.2.117 }}
-*{{cite journal  | author=Gerhard DS, Wagner L, Feingold EA, ''et al.'' |title=The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). |journal=Genome Res. |volume=14 |issue= 10B |pages= 2121-7 |year= 2004 |pmid= 15489334 |doi= 10.1101/gr.2596504 }}
+*{{cite journal   |vauthors=Gerhard DS, Wagner L, Feingold EA, etal |title=The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). |journal=Genome Res. |volume=14 |issue= 10B |pages= 2121–7 |year= 2004 |pmid= 15489334 |doi= 10.1101/gr.2596504  | pmc=528928 }}
-*{{cite journal  | author=Suzuki Y, Yamashita R, Shirota M, ''et al.'' |title=Sequence comparison of human and mouse genes reveals a homologous block structure in the promoter regions. |journal=Genome Res. |volume=14 |issue= 9 |pages= 1711-8 |year= 2004 |pmid= 15342556 |doi= 10.1101/gr.2435604 }}
+*{{cite journal   |vauthors=Suzuki Y, Yamashita R, Shirota M, etal |title=Sequence comparison of human and mouse genes reveals a homologous block structure in the promoter regions. |journal=Genome Res. |volume=14 |issue= 9 |pages= 1711–8 |year= 2004 |pmid= 15342556 |doi= 10.1101/gr.2435604  | pmc=515316 }}
-*{{cite journal  | author=Grimwood J, Gordon LA, Olsen A, ''et al.'' |title=The DNA sequence and biology of human chromosome 19. |journal=Nature |volume=428 |issue= 6982 |pages= 529-35 |year= 2004 |pmid= 15057824 |doi= 10.1038/nature02399 }}
+*{{cite journal   |vauthors=Grimwood J, Gordon LA, Olsen A, etal |title=The DNA sequence and biology of human chromosome 19. |journal=Nature |volume=428 |issue= 6982 |pages= 529–35 |year= 2004 |pmid= 15057824 |doi= 10.1038/nature02399 }}
-*{{cite journal  | author=Hansen LV, Gårdsvoll H, Nielsen BS, ''et al.'' |title=Structural analysis and tissue localization of human C4.4A: a protein homologue of the urokinase receptor. |journal=Biochem. J. |volume=380 |issue= Pt 3 |pages= 845-57 |year= 2004 |pmid= 15012588 |doi= 10.1042/BJ20031478 }}
+*{{cite journal   |vauthors=Hansen LV, Gårdsvoll H, Nielsen BS, etal |title=Structural analysis and tissue localization of human C4.4A: a protein homologue of the urokinase receptor. |journal=Biochem. J. |volume=380 |issue= Pt 3 |pages= 845–57 |year= 2004 |pmid= 15012588 |doi= 10.1042/BJ20031478  | pmc=1224211 }}
-*{{cite journal  | author=Clark HF, Gurney AL, Abaya E, ''et al.'' |title=The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. |journal=Genome Res. |volume=13 |issue= 10 |pages= 2265-70 |year= 2003 |pmid= 12975309 |doi= 10.1101/gr.1293003 }}
+*{{cite journal   |vauthors=Clark HF, Gurney AL, Abaya E, etal |title=The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. |journal=Genome Res. |volume=13 |issue= 10 |pages= 2265–70 |year= 2003 |pmid= 12975309 |doi= 10.1101/gr.1293003  | pmc=403697 }}
-*{{cite journal  | author=Fletcher GC, Patel S, Tyson K, ''et al.'' |title=hAG-2 and hAG-3, human homologues of genes involved in differentiation, are associated with oestrogen receptor-positive breast tumours and interact with metastasis gene C4.4a and dystroglycan. |journal=Br. J. Cancer |volume=88 |issue= 4 |pages= 579-85 |year= 2003 |pmid= 12592373 |doi= 10.1038/sj.bjc.6600740 }}
+*{{cite journal   |vauthors=Fletcher GC, Patel S, Tyson K, etal |title=hAG-2 and hAG-3, human homologues of genes involved in differentiation, are associated with oestrogen receptor-positive breast tumours and interact with metastasis gene C4.4a and dystroglycan. |journal=Br. J. Cancer |volume=88 |issue= 4 |pages= 579–85 |year= 2003 |pmid= 12592373 |doi= 10.1038/sj.bjc.6600740  | pmc=2377166 }}
-*{{cite journal  | author=Strausberg RL, Feingold EA, Grouse LH, ''et al.'' |title=Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. |journal=Proc. Natl. Acad. Sci. U.S.A. |volume=99 |issue= 26 |pages= 16899-903 |year= 2003 |pmid= 12477932 |doi= 10.1073/pnas.242603899 }}
+*{{cite journal   |vauthors=Strausberg RL, Feingold EA, Grouse LH, etal |title=Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. |journal=Proc. Natl. Acad. Sci. U.S.A. |volume=99 |issue= 26 |pages= 16899–903 |year= 2003 |pmid= 12477932 |doi= 10.1073/pnas.242603899  | pmc=139241 }}
-*{{cite journal  | author=Adam PJ, Boyd R, Tyson KL, ''et al.'' |title=Comprehensive proteomic analysis of breast cancer cell membranes reveals unique proteins with potential roles in clinical cancer. |journal=J. Biol. Chem. |volume=278 |issue= 8 |pages= 6482-9 |year= 2003 |pmid= 12477722 |doi= 10.1074/jbc.M210184200 }}
+*{{cite journal   |vauthors=Adam PJ, Boyd R, Tyson KL, etal |title=Comprehensive proteomic analysis of breast cancer cell membranes reveals unique proteins with potential roles in clinical cancer. |journal=J. Biol. Chem. |volume=278 |issue= 8 |pages= 6482–9 |year= 2003 |pmid= 12477722 |doi= 10.1074/jbc.M210184200 }}
-*{{cite journal  | author=Smith BA, Kennedy WJ, Harnden P, ''et al.'' |title=Identification of genes involved in human urothelial cell-matrix interactions: implications for the progression pathways of malignant urothelium. |journal=Cancer Res. |volume=61 |issue= 4 |pages= 1678-85 |year= 2001 |pmid= 11245483 |doi=  }}
-*{{cite journal  | author=Würfel J, Seiter S, Stassar M, ''et al.'' |title=Cloning of the human homologue of the metastasis-associated rat C4.4A. |journal=Gene |volume=262 |issue= 1-2 |pages= 35-41 |year= 2001 |pmid= 11179665 |doi=  }}
 }}
 {{refend}}
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+| update_page = yes
+| require_manual_inspection = no
+| update_protein_box = yes
+| update_summary = yes
+| update_citations = yes
+}}
+{{gene-19-stub}}

LYPD3: Difference between revisions

Latest revision as of 18:14, 2 September 2017

References

Further reading

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