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| | '''Pyridoxal kinase''' is an [[enzyme]] that in humans is encoded by the ''PDXK'' [[gene]].<ref name="pmid9099727">{{cite journal |vauthors=Hanna MC, Turner AJ, Kirkness EF | title = Human pyridoxal kinase. cDNA cloning, expression, and modulation by ligands of the benzodiazepine receptor | journal = J Biol Chem | volume = 272 | issue = 16 | pages = 10756–60 |date=May 1997 | pmid = 9099727 | pmc = | doi =10.1074/jbc.272.16.10756 }}</ref><ref name="entrez">{{cite web | title = Entrez Gene: PDXK pyridoxal (pyridoxine, vitamin B<sub>6</sub>) kinase| url = https://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=8566| accessdate = }}</ref> | ||
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| summary_text = The protein encoded by this gene phosphorylates vitamin | | summary_text = The protein encoded by this gene phosphorylates vitamin B<sub>6</sub>, a step required for the conversion of vitamin B<sub>6</sub> to pyridoxal-5-phosphate, an important cofactor in intermediary metabolism. The encoded protein is cytoplasmic and probably acts as a homodimer. Alternatively spliced transcript variants have been described, but their biological validity has not been determined.<ref name="entrez"/> | ||
}} | }} | ||
==References== | ==References== | ||
{{reflist | {{reflist}} | ||
==Further reading== | ==Further reading== | ||
{{refbegin | 2}} | {{refbegin | 2}} | ||
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| citations = | | citations = | ||
*{{cite journal | | *{{cite journal |vauthors=Chern CJ, Beutler E |title=Biochemical and electrophoretic studies of erythrocyte pyridoxine kinase in white and black Americans |journal=Am. J. Hum. Genet. |volume=28 |issue= 1 |pages= 9–17 |year= 1976 |pmid= 2009 | pmc=1684914 }} | ||
*{{cite journal | author=Merrill AH | *{{cite journal | author=Merrill AH |title=Metabolism of vitamin B-6 by human liver |journal=J. Nutr. |volume=114 |issue= 9 |pages= 1664–74 |year= 1984 |pmid= 6088736 |doi= |name-list-format=vanc| author2=Henderson JM | author3=Wang E | display-authors=3 | last4=McDonald | first4=BW | last5=Millikan | first5=WJ }} | ||
*{{cite journal |vauthors=Maruyama K, Sugano S |title=Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides |journal=Gene |volume=138 |issue= 1–2 |pages= 171–4 |year= 1994 |pmid= 8125298 |doi=10.1016/0378-1119(94)90802-8 }} | |||
*{{cite journal | | *{{cite journal | author=Zhang Z |title=Synthesis of N-(4'-pyridoxyl)sphingosine and its uptake and metabolism by isolated cells |journal=Membrane biochemistry |volume=10 |issue= 1 |pages= 53–9 |year= 1993 |pmid= 8510562 |doi=10.3109/09687689309150252 |name-list-format=vanc| author2=Smith E | author3=Surowiec SM | display-authors=3 | last4=Merrill | first4=Alfred H. | last5=McCormick | first5=Donald B. }} | ||
*{{cite journal | author= | *{{cite journal |vauthors=Lainé-Cessac P, Cailleux A, Allain P |title=Mechanisms of the inhibition of human erythrocyte pyridoxal kinase by drugs |journal=Biochem. Pharmacol. |volume=54 |issue= 8 |pages= 863–70 |year= 1997 |pmid= 9354586 |doi=10.1016/S0006-2952(97)00252-9 }} | ||
*{{cite journal | author=Suzuki Y |title=Construction and characterization of a full length-enriched and a 5'-end-enriched cDNA library |journal=Gene |volume=200 |issue= 1–2 |pages= 149–56 |year= 1997 |pmid= 9373149 |doi=10.1016/S0378-1119(97)00411-3 |name-list-format=vanc| author2=Yoshitomo-Nakagawa K | author3=Maruyama K | display-authors=3 | last4=Suyama | first4=A | last5=Sugano | first5=S }} | |||
*{{cite journal | | *{{cite journal | author=Hattori M |title=The DNA sequence of human chromosome 21 |journal=Nature |volume=405 |issue= 6784 |pages= 311–9 |year= 2000 |pmid= 10830953 |doi= 10.1038/35012518 |name-list-format=vanc| author2=Fujiyama A | author3=Taylor TD | display-authors=3 | last4=Taylor | first4=T. D. | last5=Watanabe | first5=H. | last6=Yada | first6=T. | last7=Park | first7=H.-S. | last8=Toyoda | first8=A. | last9=Ishii | first9=K. }} | ||
*{{cite journal | author= | *{{cite journal |vauthors=Lee HS, Moon BJ, Choi SY, Kwon OS |title=Human pyridoxal kinase: overexpression and properties of the recombinant enzyme |journal=Mol. Cells |volume=10 |issue= 4 |pages= 452–9 |year= 2001 |pmid= 10987144 |doi= }} | ||
*{{cite journal | author=Strausberg RL |title=Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences |journal=Proc. Natl. Acad. Sci. U.S.A. |volume=99 |issue= 26 |pages= 16899–903 |year= 2003 |pmid= 12477932 |doi= 10.1073/pnas.242603899 | pmc=139241 |name-list-format=vanc| author2=Feingold EA | author3=Grouse LH | display-authors=3 | last4=Derge | first4=JG | last5=Klausner | first5=RD | last6=Collins | first6=FS | last7=Wagner | first7=L | last8=Shenmen | first8=CM | last9=Schuler | first9=GD }} | |||
*{{cite journal | author= | *{{cite journal | author=Ota T |title=Complete sequencing and characterization of 21,243 full-length human cDNAs |journal=Nat. Genet. |volume=36 |issue= 1 |pages= 40–5 |year= 2004 |pmid= 14702039 |doi= 10.1038/ng1285 |name-list-format=vanc| author2=Suzuki Y | author3=Nishikawa T | display-authors=3 | last4=Otsuki | first4=Tetsuji | last5=Sugiyama | first5=Tomoyasu | last6=Irie | first6=Ryotaro | last7=Wakamatsu | first7=Ai | last8=Hayashi | first8=Koji | last9=Sato | first9=Hiroyuki }} | ||
*{{cite journal |vauthors=Shin JH, Weitzdoerfer R, Fountoulakis M, Lubec G |title=Expression of cystathionine beta-synthase, pyridoxal kinase, and ES1 protein homolog (mitochondrial precursor) in fetal Down syndrome brain |journal=Neurochem. Int. |volume=45 |issue= 1 |pages= 73–9 |year= 2004 |pmid= 15082224 |doi= 10.1016/j.neuint.2003.12.004 }} | |||
*{{cite journal | | *{{cite journal | author=Fang X |title=Expression of a novel pyridoxal kinase mRNA splice variant, PKH-T, in human testis |journal=Asian J. Androl. |volume=6 |issue= 2 |pages= 83–91 |year= 2004 |pmid= 15154080 |doi= |name-list-format=vanc| author2=Zhou ZM | author3=Lu L | display-authors=3 | last4=Yin | first4=LL | last5=Li | first5=JM | last6=Zhen | first6=Y | last7=Wang | first7=H | last8=Sha | first8=JH }} | ||
*{{cite journal | author= | *{{cite journal | author=Gerhard DS |title=The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC) |journal=Genome Res. |volume=14 |issue= 10B |pages= 2121–7 |year= 2004 |pmid= 15489334 |doi= 10.1101/gr.2596504 | pmc=528928 |name-list-format=vanc| author2=Wagner L | author3=Feingold EA | display-authors=3 | last4=Shenmen | first4=CM | last5=Grouse | first5=LH | last6=Schuler | first6=G | last7=Klein | first7=SL | last8=Old | first8=S | last9=Rasooly | first9=R }} | ||
*{{cite journal | author=Wang L |title=A two-dimensional electrophoresis reference map of human ovary |journal=J. Mol. Med. |volume=83 |issue= 10 |pages= 812–21 |year= 2006 |pmid= 16021519 |doi= 10.1007/s00109-005-0676-y |name-list-format=vanc| author2=Zhu YF | author3=Guo XJ | display-authors=3 | last4=Huo | first4=Ran | last5=Ma | first5=Xiang | last6=Lin | first6=Min | last7=Zhou | first7=Zuo-Min | last8=Sha | first8=Jia-Hao }} | |||
*{{cite journal | author=Kimura K |title=Diversification of transcriptional modulation: Large-scale identification and characterization of putative alternative promoters of human genes |journal=Genome Res. |volume=16 |issue= 1 |pages= 55–65 |year= 2006 |pmid= 16344560 |doi= 10.1101/gr.4039406 | pmc=1356129 |name-list-format=vanc| author2=Wakamatsu A | author3=Suzuki Y | display-authors=3 | last4=Ota | first4=T | last5=Nishikawa | first5=T | last6=Yamashita | first6=R | last7=Yamamoto | first7=J | last8=Sekine | first8=M | last9=Tsuritani | first9=K }} | |||
*{{cite journal |vauthors=Flanagan JM, Beutler E |title=The genetic basis of human erythrocyte pyridoxal kinase activity variation |journal=Haematologica |volume=91 |issue= 6 |pages= 801–4 |year= 2006 |pmid= 16704963 |doi= }} | |||
*{{cite journal | | *{{cite journal | author=Hu YH |title=Cell array-based intracellular localization screening reveals novel functional features of human chromosome 21 proteins |journal=BMC Genomics |volume=7|pages= 155 |year= 2006 |pmid= 16780588 |doi= 10.1186/1471-2164-7-155 | pmc=1526728 |name-list-format=vanc| author2=Warnatz HJ | author3=Vanhecke D | display-authors=3 | last4=Wagner | first4=Florian | last5=Fiebitz | first5=Andrea | last6=Thamm | first6=Sabine | last7=Kahlem | first7=Pascal | last8=Lehrach | first8=Hans | last9=Yaspo | first9=Marie-Laure }} | ||
*{{cite journal | author= | *{{cite journal | author=Musayev FN |title=Crystal Structure of human pyridoxal kinase: Structural basis of M+ and M2+ activation |journal=Protein Sci. |volume=16 |issue= 10 |pages= 2184–94 |year= 2007 |pmid= 17766369 |doi= 10.1110/ps.073022107 | pmc=2204131 |name-list-format=vanc| author2=di Salvo ML | author3=Ko TP | display-authors=3 | last4=Gandhi | first4=Amit K. | last5=Goswami | first5=Ashwini | last6=Schirch | first6=Verne | last7=Safo | first7=Martin K. }} | ||
}} | }} | ||
{{refend}} | {{refend}} | ||
{{PDB Gallery|geneid=8566}} | |||
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{{gene-21-stub}} | {{gene-21-stub}} | ||
Revision as of 17:53, 7 September 2017
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Species | Human | Mouse | |||||
Entrez |
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Ensembl |
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UniProt |
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RefSeq (mRNA) |
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Pyridoxal kinase is an enzyme that in humans is encoded by the PDXK gene.[1][2]
The protein encoded by this gene phosphorylates vitamin B6, a step required for the conversion of vitamin B6 to pyridoxal-5-phosphate, an important cofactor in intermediary metabolism. The encoded protein is cytoplasmic and probably acts as a homodimer. Alternatively spliced transcript variants have been described, but their biological validity has not been determined.[2]
References
- ↑ Hanna MC, Turner AJ, Kirkness EF (May 1997). "Human pyridoxal kinase. cDNA cloning, expression, and modulation by ligands of the benzodiazepine receptor". J Biol Chem. 272 (16): 10756–60. doi:10.1074/jbc.272.16.10756. PMID 9099727.
- ↑ 2.0 2.1 "Entrez Gene: PDXK pyridoxal (pyridoxine, vitamin B6) kinase".
Further reading
- Chern CJ, Beutler E (1976). "Biochemical and electrophoretic studies of erythrocyte pyridoxine kinase in white and black Americans". Am. J. Hum. Genet. 28 (1): 9–17. PMC 1684914. PMID 2009.
- Merrill AH, Henderson JM, Wang E, et al. (1984). "Metabolism of vitamin B-6 by human liver". J. Nutr. 114 (9): 1664–74. PMID 6088736.
- Maruyama K, Sugano S (1994). "Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides". Gene. 138 (1–2): 171–4. doi:10.1016/0378-1119(94)90802-8. PMID 8125298.
- Zhang Z, Smith E, Surowiec SM, et al. (1993). "Synthesis of N-(4'-pyridoxyl)sphingosine and its uptake and metabolism by isolated cells". Membrane biochemistry. 10 (1): 53–9. doi:10.3109/09687689309150252. PMID 8510562.
- Lainé-Cessac P, Cailleux A, Allain P (1997). "Mechanisms of the inhibition of human erythrocyte pyridoxal kinase by drugs". Biochem. Pharmacol. 54 (8): 863–70. doi:10.1016/S0006-2952(97)00252-9. PMID 9354586.
- Suzuki Y, Yoshitomo-Nakagawa K, Maruyama K, et al. (1997). "Construction and characterization of a full length-enriched and a 5'-end-enriched cDNA library". Gene. 200 (1–2): 149–56. doi:10.1016/S0378-1119(97)00411-3. PMID 9373149.
- Hattori M, Fujiyama A, Taylor TD, et al. (2000). "The DNA sequence of human chromosome 21". Nature. 405 (6784): 311–9. doi:10.1038/35012518. PMID 10830953.
- Lee HS, Moon BJ, Choi SY, Kwon OS (2001). "Human pyridoxal kinase: overexpression and properties of the recombinant enzyme". Mol. Cells. 10 (4): 452–9. PMID 10987144.
- Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. doi:10.1073/pnas.242603899. PMC 139241. PMID 12477932.
- Ota T, Suzuki Y, Nishikawa T, et al. (2004). "Complete sequencing and characterization of 21,243 full-length human cDNAs". Nat. Genet. 36 (1): 40–5. doi:10.1038/ng1285. PMID 14702039.
- Shin JH, Weitzdoerfer R, Fountoulakis M, Lubec G (2004). "Expression of cystathionine beta-synthase, pyridoxal kinase, and ES1 protein homolog (mitochondrial precursor) in fetal Down syndrome brain". Neurochem. Int. 45 (1): 73–9. doi:10.1016/j.neuint.2003.12.004. PMID 15082224.
- Fang X, Zhou ZM, Lu L, et al. (2004). "Expression of a novel pyridoxal kinase mRNA splice variant, PKH-T, in human testis". Asian J. Androl. 6 (2): 83–91. PMID 15154080.
- Gerhard DS, Wagner L, Feingold EA, et al. (2004). "The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC)". Genome Res. 14 (10B): 2121–7. doi:10.1101/gr.2596504. PMC 528928. PMID 15489334.
- Wang L, Zhu YF, Guo XJ, et al. (2006). "A two-dimensional electrophoresis reference map of human ovary". J. Mol. Med. 83 (10): 812–21. doi:10.1007/s00109-005-0676-y. PMID 16021519.
- Kimura K, Wakamatsu A, Suzuki Y, et al. (2006). "Diversification of transcriptional modulation: Large-scale identification and characterization of putative alternative promoters of human genes". Genome Res. 16 (1): 55–65. doi:10.1101/gr.4039406. PMC 1356129. PMID 16344560.
- Flanagan JM, Beutler E (2006). "The genetic basis of human erythrocyte pyridoxal kinase activity variation". Haematologica. 91 (6): 801–4. PMID 16704963.
- Hu YH, Warnatz HJ, Vanhecke D, et al. (2006). "Cell array-based intracellular localization screening reveals novel functional features of human chromosome 21 proteins". BMC Genomics. 7: 155. doi:10.1186/1471-2164-7-155. PMC 1526728. PMID 16780588.
- Musayev FN, di Salvo ML, Ko TP, et al. (2007). "Crystal Structure of human pyridoxal kinase: Structural basis of M+ and M2+ activation". Protein Sci. 16 (10): 2184–94. doi:10.1110/ps.073022107. PMC 2204131. PMID 17766369.
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