SERBP1: Difference between revisions

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{{Distinguish2|[[Sterol regulatory element-binding protein|srebp1]]}}
{{PBB_Controls
{{Infobox_gene}}
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'''Plasminogen activator inhibitor 1 RNA-binding protein''' (serbp1) is a [[protein]] that in humans is encoded by the ''SERBP1'' [[gene]].<ref name="pmid11001948">{{cite journal |vauthors=Heaton JH, Dlakic WM, Dlakic M, Gelehrter TD | title = Identification and cDNA cloning of a novel RNA-binding protein that interacts with the cyclic nucleotide-responsive sequence in the Type-1 plasminogen activator inhibitor mRNA | journal = J Biol Chem | volume = 276 | issue = 5 | pages = 3341–7 |date=May 2001 | pmid = 11001948 | pmc =  | doi = 10.1074/jbc.M006538200 }}</ref><ref name="pmid10810093">{{cite journal |vauthors=Lai CH, Chou CY, Ch'ang LY, Liu CS, Lin W | title = Identification of novel human genes evolutionarily conserved in Caenorhabditis elegans by comparative proteomics | journal = Genome Res | volume = 10 | issue = 5 | pages = 703–13 |date=Aug 2000 | pmid = 10810093 | pmc = 310876 | doi =10.1101/gr.10.5.703 }}</ref><ref name="entrez">{{cite web | title = Entrez Gene: SERBP1 SERPINE1 mRNA binding protein 1| url = https://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=26135| accessdate = }}</ref>
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{{GNF_Protein_box
| image =
  | image_source =
| PDB =
| Name = SERPINE1 mRNA binding protein 1
| HGNCid = 17860
| Symbol = SERBP1
| AltSymbols =; CGI-55; CHD3IP; DKFZp564M2423; FLJ90489; HABP4L; PAI-RBP1; PAIRBP1
| OMIM = 607378
| ECnumber = 
| Homologene = 32275
| MGIid = 1914120
| GeneAtlas_image1 = PBB_GE_SERBP1_209669_s_at_tn.png
  | GeneAtlas_image2 = PBB_GE_SERBP1_210466_s_at_tn.png
| GeneAtlas_image3 = PBB_GE_SERBP1_217724_at_tn.png
| Function = {{GNF_GO|id=GO:0003723 |text = RNA binding}} {{GNF_GO|id=GO:0003730 |text = mRNA 3'-UTR binding}} {{GNF_GO|id=GO:0005515 |text = protein binding}}
| Component = {{GNF_GO|id=GO:0005634 |text = nucleus}}
| Process = {{GNF_GO|id=GO:0043488 |text = regulation of mRNA stability}}
| Orthologs = {{GNF_Ortholog_box
    | Hs_EntrezGene = 26135
    | Hs_Ensembl = ENSG00000142864
    | Hs_RefseqProtein = NP_001018077
    | Hs_RefseqmRNA = NM_001018067
    | Hs_GenLoc_db =
    | Hs_GenLoc_chr = 1
    | Hs_GenLoc_start = 67646081
    | Hs_GenLoc_end = 67668711
    | Hs_Uniprot = Q8NC51
    | Mm_EntrezGene = 66870
    | Mm_Ensembl = ENSMUSG00000036371
    | Mm_RefseqmRNA = NM_025814
    | Mm_RefseqProtein = NP_080090
    | Mm_GenLoc_db =   
    | Mm_GenLoc_chr = 6
    | Mm_GenLoc_start = 67196557
    | Mm_GenLoc_end = 67215541
    | Mm_Uniprot = Q3UEI6
  }}
}}
'''SERPINE1 mRNA binding protein 1''', also known as '''SERBP1''', is a human [[gene]].<ref name="entrez">{{cite web | title = Entrez Gene: SERBP1 SERPINE1 mRNA binding protein 1| url = http://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=26135| accessdate = }}</ref>


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==Interactions==
SERBP1 has been shown to [[Protein-protein interaction|interact]] with [[CHD3]].<ref name=pmid12505151>{{cite journal |doi=10.1016/S0014-5793(02)03737-7 |vauthors=Lemos TA, Passos DO, Nery FC, Kobarg J  |date=Jan 2003 |title=Characterization of a new family of proteins that interact with the C-terminal region of the chromatin-remodeling factor CHD-3 |journal=FEBS Lett. |volume=533 |issue=1-3 |pages=14–20 |publisher= |location = Netherlands| issn = 0014-5793| pmid = 12505151 | bibcode = | oclc =| id = | url = | language = | format = | accessdate = | laysummary = | laysource = | laydate = | quote = }}</ref><ref name=pmid16169070>{{cite journal |vauthors=Stelzl U, Worm U, Lalowski M, Haenig C, Brembeck FH, Goehler H, Stroedicke M, Zenkner M, Schoenherr A, Koeppen S, Timm J, Mintzlaff S, Abraham C, Bock N, Kietzmann S, Goedde A, Toksöz E, Droege A, Krobitsch S, Korn B, Birchmeier W, Lehrach H, Wanker EE  |date=Sep 2005 |title=A human protein-protein interaction network: a resource for annotating the proteome |journal=Cell |volume=122 |issue=6 |pages=957–68 |publisher= |location = United States| issn = 0092-8674| pmid = 16169070 |doi = 10.1016/j.cell.2005.08.029 | bibcode = | oclc =| id = | url = | language = | format = | accessdate = | laysummary = | laysource = | laydate = | quote = }}</ref>


==References==
==References==
{{reflist|2}}
{{reflist}}
 
==Further reading==
==Further reading==
{{refbegin | 2}}
{{refbegin | 2}}
{{PBB_Further_reading  
{{PBB_Further_reading  
| citations =  
| citations =  
*{{cite journal  | author=Maruyama K, Sugano S |title=Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides. |journal=Gene |volume=138 |issue= 1-2 |pages= 171-4 |year= 1994 |pmid= 8125298 |doi=  }}
*{{cite journal  |author1=Maruyama K |author2=Sugano S |title=Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides. |journal=Gene |volume=138 |issue= 1-2 |pages= 171–4 |year= 1994 |pmid= 8125298 |doi=10.1016/0378-1119(94)90802-8 }}
*{{cite journal | author=Andersson B, Wentland MA, Ricafrente JY, ''et al.'' |title=A "double adaptor" method for improved shotgun library construction. |journal=Anal. Biochem. |volume=236 |issue= 1 |pages= 107-13 |year= 1996 |pmid= 8619474 |doi= 10.1006/abio.1996.0138 }}
*{{cite journal   |vauthors=Andersson B, Wentland MA, Ricafrente JY, etal |title=A "double adaptor" method for improved shotgun library construction. |journal=Anal. Biochem. |volume=236 |issue= 1 |pages= 107–13 |year= 1996 |pmid= 8619474 |doi= 10.1006/abio.1996.0138 }}
*{{cite journal | author=Yu W, Andersson B, Worley KC, ''et al.'' |title=Large-scale concatenation cDNA sequencing. |journal=Genome Res. |volume=7 |issue= 4 |pages= 353-8 |year= 1997 |pmid= 9110174 |doi=  }}
*{{cite journal   |vauthors=Yu W, Andersson B, Worley KC, etal |title=Large-scale concatenation cDNA sequencing. |journal=Genome Res. |volume=7 |issue= 4 |pages= 353–8 |year= 1997 |pmid= 9110174 |doi= 10.1101/gr.7.4.353| pmc=139146 }}
*{{cite journal | author=Suzuki Y, Yoshitomo-Nakagawa K, Maruyama K, ''et al.'' |title=Construction and characterization of a full length-enriched and a 5'-end-enriched cDNA library. |journal=Gene |volume=200 |issue= 1-2 |pages= 149-56 |year= 1997 |pmid= 9373149 |doi=  }}
*{{cite journal   |vauthors=Suzuki Y, Yoshitomo-Nakagawa K, Maruyama K, etal |title=Construction and characterization of a full length-enriched and a 5'-end-enriched cDNA library. |journal=Gene |volume=200 |issue= 1-2 |pages= 149–56 |year= 1997 |pmid= 9373149 |doi=10.1016/S0378-1119(97)00411-3 }}
*{{cite journal | author=Lai CH, Chou CY, Ch'ang LY, ''et al.'' |title=Identification of novel human genes evolutionarily conserved in Caenorhabditis elegans by comparative proteomics. |journal=Genome Res. |volume=10 |issue= 5 |pages= 703-13 |year= 2000 |pmid= 10810093 |doi=  }}
*{{cite journal   |vauthors=Wiemann S, Weil B, Wellenreuther R, etal |title=Toward a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. |journal=Genome Res. |volume=11 |issue= 3 |pages= 422–35 |year= 2001 |pmid= 11230166 |doi= 10.1101/gr.GR1547R | pmc=311072 }}
*{{cite journal  | author=Heaton JH, Dlakic WM, Dlakic M, Gelehrter TD |title=Identification and cDNA cloning of a novel RNA-binding protein that interacts with the cyclic nucleotide-responsive sequence in the Type-1 plasminogen activator inhibitor mRNA. |journal=J. Biol. Chem. |volume=276 |issue= 5 |pages= 3341-7 |year= 2001 |pmid= 11001948 |doi= 10.1074/jbc.M006538200 }}
*{{cite journal  |author1=Bucková D |author2=Izakovicová Hollá L |author3=Vácha J |title=Polymorphism 4G/5G in the plasminogen activator inhibitor-1 (PAI-1) gene is associated with IgE-mediated allergic diseases and asthma in the Czech population. |journal=Allergy |volume=57 |issue= 5 |pages= 446–8 |year= 2002 |pmid= 11972486 |doi=10.1034/j.1398-9995.2002.03582.x  }}
*{{cite journal | author=Wiemann S, Weil B, Wellenreuther R, ''et al.'' |title=Toward a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. |journal=Genome Res. |volume=11 |issue= 3 |pages= 422-35 |year= 2001 |pmid= 11230166 |doi= 10.1101/gr.154701 }}
*{{cite journal   |vauthors=Jones K, Powell J, Brown L, etal |title=The influence of 4G/5G polymorphism in the plasminogen activator inhibitor-1 gene promoter on the incidence, growth and operative risk of abdominal aortic aneurysm. |journal=European Journal of Vascular and Endovascular Surgery |volume=23 |issue= 5 |pages= 421–5 |year= 2002 |pmid= 12027469 |doi= 10.1053/ejvs.2002.1633 }}
*{{cite journal | author=Bucková D, Izakovicová Hollá L, Vácha J |title=Polymorphism 4G/5G in the plasminogen activator inhibitor-1 (PAI-1) gene is associated with IgE-mediated allergic diseases and asthma in the Czech population. |journal=Allergy |volume=57 |issue= 5 |pages= 446-8 |year= 2002 |pmid= 11972486 |doi=  }}
*{{cite journal   |vauthors=Strausberg RL, Feingold EA, Grouse LH, etal |title=Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. |journal=Proc. Natl. Acad. Sci. U.S.A. |volume=99 |issue= 26 |pages= 16899–903 |year= 2003 |pmid= 12477932 |doi= 10.1073/pnas.242603899 | pmc=139241 }}
*{{cite journal  | author=Jones K, Powell J, Brown L, ''et al.'' |title=The influence of 4G/5G polymorphism in the plasminogen activator inhibitor-1 gene promoter on the incidence, growth and operative risk of abdominal aortic aneurysm. |journal=European journal of vascular and endovascular surgery : the official journal of the European Society for Vascular Surgery |volume=23 |issue= 5 |pages= 421-5 |year= 2002 |pmid= 12027469 |doi= 10.1053/ejvs.2002.1633 }}
*{{cite journal  |author1=Lemos TA |author2=Passos DO |author3=Nery FC |author4=Kobarg J |title=Characterization of a new family of proteins that interact with the C-terminal region of the chromatin-remodeling factor CHD-3. |journal=FEBS Lett. |volume=533 |issue= 1-3 |pages= 14–20 |year= 2003 |pmid= 12505151 |doi=10.1016/S0014-5793(02)03737-7  }}
*{{cite journal | author=Strausberg RL, Feingold EA, Grouse LH, ''et al.'' |title=Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. |journal=Proc. Natl. Acad. Sci. U.S.A. |volume=99 |issue= 26 |pages= 16899-903 |year= 2003 |pmid= 12477932 |doi= 10.1073/pnas.242603899 }}
*{{cite journal   |vauthors=Ota T, Suzuki Y, Nishikawa T, etal |title=Complete sequencing and characterization of 21,243 full-length human cDNAs. |journal=Nat. Genet. |volume=36 |issue= 1 |pages= 40–5 |year= 2004 |pmid= 14702039 |doi= 10.1038/ng1285 }}
*{{cite journal | author=Lemos TA, Passos DO, Nery FC, Kobarg J |title=Characterization of a new family of proteins that interact with the C-terminal region of the chromatin-remodeling factor CHD-3. |journal=FEBS Lett. |volume=533 |issue= 1-3 |pages= 14-20 |year= 2003 |pmid= 12505151 |doi=  }}
*{{cite journal   |vauthors=Gerhard DS, Wagner L, Feingold EA, etal |title=The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). |journal=Genome Res. |volume=14 |issue= 10B |pages= 2121–7 |year= 2004 |pmid= 15489334 |doi= 10.1101/gr.2596504 | pmc=528928 }}
*{{cite journal | author=Ota T, Suzuki Y, Nishikawa T, ''et al.'' |title=Complete sequencing and characterization of 21,243 full-length human cDNAs. |journal=Nat. Genet. |volume=36 |issue= 1 |pages= 40-5 |year= 2004 |pmid= 14702039 |doi= 10.1038/ng1285 }}
*{{cite journal   |vauthors=Otsuki T, Ota T, Nishikawa T, etal |title=Signal sequence and keyword trap in silico for selection of full-length human cDNAs encoding secretion or membrane proteins from oligo-capped cDNA libraries. |journal=DNA Res. |volume=12 |issue= 2 |pages= 117–26 |year= 2007 |pmid= 16303743 |doi= 10.1093/dnares/12.2.117 }}
*{{cite journal  | author=Gerhard DS, Wagner L, Feingold EA, ''et al.'' |title=The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). |journal=Genome Res. |volume=14 |issue= 10B |pages= 2121-7 |year= 2004 |pmid= 15489334 |doi= 10.1101/gr.2596504 }}
*{{cite journal  |author1=Lemos TA |author2=Kobarg J |title=CGI-55 interacts with nuclear proteins and co-localizes to p80-coilin positive-coiled bodies in the nucleus. |journal=Cell Biochem. Biophys. |volume=44 |issue= 3 |pages= 463–74 |year= 2006 |pmid= 16679534 |doi=10.1385/CBB:44:3:463  }}
*{{cite journal  | author=Otsuki T, Ota T, Nishikawa T, ''et al.'' |title=Signal sequence and keyword trap in silico for selection of full-length human cDNAs encoding secretion or membrane proteins from oligo-capped cDNA libraries. |journal=DNA Res. |volume=12 |issue= 2 |pages= 117-26 |year= 2007 |pmid= 16303743 |doi= 10.1093/dnares/12.2.117 }}
*{{cite journal  |author1=Passos DO |author2=Bressan GC |author3=Nery FC |author4=Kobarg J |title=Ki-1/57 interacts with PRMT1 and is a substrate for arginine methylation. |journal=FEBS J. |volume=273 |issue= 17 |pages= 3946–61 |year= 2006 |pmid= 16879614 |doi= 10.1111/j.1742-4658.2006.05399.x }}
*{{cite journal  | author=Lemos TA, Kobarg J |title=CGI-55 interacts with nuclear proteins and co-localizes to p80-coilin positive-coiled bodies in the nucleus. |journal=Cell Biochem. Biophys. |volume=44 |issue= 3 |pages= 463-74 |year= 2006 |pmid= 16679534 |doi=  }}
*{{cite journal   |vauthors=Dalmáz CA, Santos KG, Botton MR, etal |title=Relationship between polymorphisms in thrombophilic genes and preeclampsia in a Brazilian population. |journal=Blood Cells Mol. Dis. |volume=37 |issue= 2 |pages= 107–10 |year= 2006 |pmid= 16963292 |doi= 10.1016/j.bcmd.2006.07.005 }}
*{{cite journal  | author=Passos DO, Bressan GC, Nery FC, Kobarg J |title=Ki-1/57 interacts with PRMT1 and is a substrate for arginine methylation. |journal=FEBS J. |volume=273 |issue= 17 |pages= 3946-61 |year= 2006 |pmid= 16879614 |doi= 10.1111/j.1742-4658.2006.05399.x }}
*{{cite journal   |vauthors=Beausoleil SA, Villén J, Gerber SA, etal |title=A probability-based approach for high-throughput protein phosphorylation analysis and site localization. |journal=Nat. Biotechnol. |volume=24 |issue= 10 |pages= 1285–92 |year= 2006 |pmid= 16964243 |doi= 10.1038/nbt1240 }}
*{{cite journal | author=Dalmáz CA, Santos KG, Botton MR, ''et al.'' |title=Relationship between polymorphisms in thrombophilic genes and preeclampsia in a Brazilian population. |journal=Blood Cells Mol. Dis. |volume=37 |issue= 2 |pages= 107-10 |year= 2006 |pmid= 16963292 |doi= 10.1016/j.bcmd.2006.07.005 }}
*{{cite journal   |vauthors=Olsen JV, Blagoev B, Gnad F, etal |title=Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. |journal=Cell |volume=127 |issue= 3 |pages= 635–48 |year= 2006 |pmid= 17081983 |doi= 10.1016/j.cell.2006.09.026 }}
*{{cite journal | author=Beausoleil SA, Villén J, Gerber SA, ''et al.'' |title=A probability-based approach for high-throughput protein phosphorylation analysis and site localization. |journal=Nat. Biotechnol. |volume=24 |issue= 10 |pages= 1285-92 |year= 2006 |pmid= 16964243 |doi= 10.1038/nbt1240 }}
*{{cite journal | author=Olsen JV, Blagoev B, Gnad F, ''et al.'' |title=Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. |journal=Cell |volume=127 |issue= 3 |pages= 635-48 |year= 2006 |pmid= 17081983 |doi= 10.1016/j.cell.2006.09.026 }}
}}
}}
{{refend}}
{{refend}}


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Revision as of 06:08, 11 September 2017

Template:Distinguish2

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Identifiers
Aliases
External IDsGeneCards: [1]
Orthologs
SpeciesHumanMouse
Entrez

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Ensembl

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UniProt

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RefSeq (mRNA)

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RefSeq (protein)

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Location (UCSC)n/an/a
PubMed searchn/an/a
Wikidata
View/Edit Human

Plasminogen activator inhibitor 1 RNA-binding protein (serbp1) is a protein that in humans is encoded by the SERBP1 gene.[1][2][3]


Interactions

SERBP1 has been shown to interact with CHD3.[4][5]

References

  1. ↑ Heaton JH, Dlakic WM, Dlakic M, Gelehrter TD (May 2001). "Identification and cDNA cloning of a novel RNA-binding protein that interacts with the cyclic nucleotide-responsive sequence in the Type-1 plasminogen activator inhibitor mRNA". J Biol Chem. 276 (5): 3341–7. doi:10.1074/jbc.M006538200. PMID 11001948.
  2. ↑ Lai CH, Chou CY, Ch'ang LY, Liu CS, Lin W (Aug 2000). "Identification of novel human genes evolutionarily conserved in Caenorhabditis elegans by comparative proteomics". Genome Res. 10 (5): 703–13. doi:10.1101/gr.10.5.703. PMC 310876. PMID 10810093.
  3. ↑ "Entrez Gene: SERBP1 SERPINE1 mRNA binding protein 1".
  4. ↑ Lemos TA, Passos DO, Nery FC, Kobarg J (Jan 2003). "Characterization of a new family of proteins that interact with the C-terminal region of the chromatin-remodeling factor CHD-3". FEBS Lett. Netherlands. 533 (1–3): 14–20. doi:10.1016/S0014-5793(02)03737-7. ISSN 0014-5793. PMID 12505151.
  5. ↑ Stelzl U, Worm U, Lalowski M, Haenig C, Brembeck FH, Goehler H, Stroedicke M, Zenkner M, Schoenherr A, Koeppen S, Timm J, Mintzlaff S, Abraham C, Bock N, Kietzmann S, Goedde A, Toksöz E, Droege A, Krobitsch S, Korn B, Birchmeier W, Lehrach H, Wanker EE (Sep 2005). "A human protein-protein interaction network: a resource for annotating the proteome". Cell. United States. 122 (6): 957–68. doi:10.1016/j.cell.2005.08.029. ISSN 0092-8674. PMID 16169070.

Further reading



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