HNRPF: Difference between revisions

Jump to navigation Jump to search
m (Robot: Automated text replacement (-{{WikiDoc Cardiology Network Infobox}} +, -<references /> +{{reflist|2}}, -{{reflist}} +{{reflist|2}}))
 
m (Bot: HTTP→HTTPS)
 
Line 1: Line 1:
<!-- The PBB_Controls template provides controls for Protein Box Bot, please see Template:PBB_Controls for details. -->
{{Infobox_gene}}
{{PBB_Controls
'''Heterogeneous nuclear ribonucleoprotein F''' is a [[protein]] that in humans is encoded by the ''HNRNPF'' [[gene]].<ref name="pmid7499401">{{cite journal |vauthors=Honore B, Rasmussen HH, Vorum H, Dejgaard K, Liu X, Gromov P, Madsen P, Gesser B, Tommerup N, Celis JE | title = Heterogeneous nuclear ribonucleoproteins H, H', and F are members of a ubiquitously expressed subfamily of related but distinct proteins encoded by genes mapping to different chromosomes | journal = J Biol Chem | volume = 270 | issue = 48 | pages = 28780–9 |date=Jan 1996 | pmid = 7499401 | pmc =  | doi =10.1074/jbc.270.48.28780 }}</ref><ref name="entrez">{{cite web | title = Entrez Gene: HNRPF heterogeneous nuclear ribonucleoprotein F| url = https://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=3185| accessdate = }}</ref>
| update_page = yes
| require_manual_inspection = no
| update_protein_box = yes
| update_summary = yes
| update_citations = yes
}}
 
<!-- The GNF_Protein_box is automatically maintained by Protein Box Bot.  See Template:PBB_Controls to Stop updates. -->
{{GNF_Protein_box
| image = PBB_Protein_HNRPF_image.jpg
| image_source = [[Protein_Data_Bank|PDB]] rendering based on 2db1.
| PDB = {{PDB2|2db1}}, {{PDB2|2hgl}}, {{PDB2|2hgn}}
| Name = Heterogeneous nuclear ribonucleoprotein F
| HGNCid = 5039
| Symbol = HNRPF
| AltSymbols =; HNRNPF; MGC110997; mcs94-1
| OMIM = 601037
| ECnumber =
| Homologene = 21032
| MGIid = 2138741
  | Function = {{GNF_GO|id=GO:0000166 |text = nucleotide binding}} {{GNF_GO|id=GO:0003723 |text = RNA binding}} {{GNF_GO|id=GO:0005515 |text = protein binding}}
| Component = {{GNF_GO|id=GO:0005634 |text = nucleus}} {{GNF_GO|id=GO:0005681 |text = spliceosome}} {{GNF_GO|id=GO:0030530 |text = heterogeneous nuclear ribonucleoprotein complex}}
| Process = {{GNF_GO|id=GO:0006397 |text = mRNA processing}} {{GNF_GO|id=GO:0043484 |text = regulation of RNA splicing}}
| Orthologs = {{GNF_Ortholog_box
    | Hs_EntrezGene = 3185
    | Hs_Ensembl = ENSG00000169813
    | Hs_RefseqProtein = NP_004957
    | Hs_RefseqmRNA = NM_004966
    | Hs_GenLoc_db = 
    | Hs_GenLoc_chr = 10
    | Hs_GenLoc_start = 43201071
    | Hs_GenLoc_end = 43224620
    | Hs_Uniprot = P52597
    | Mm_EntrezGene = 98758
    | Mm_Ensembl = ENSMUSG00000042079
    | Mm_RefseqmRNA = NM_133834
    | Mm_RefseqProtein = NP_598595
    | Mm_GenLoc_db =  
    | Mm_GenLoc_chr = 6
    | Mm_GenLoc_start = 117872407
    | Mm_GenLoc_end = 117891236
    | Mm_Uniprot = Q8R582
  }}
}}
'''Heterogeneous nuclear ribonucleoprotein F''', also known as '''HNRPF''', is a human [[gene]].<ref name="entrez">{{cite web | title = Entrez Gene: HNRPF heterogeneous nuclear ribonucleoprotein F| url = http://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=3185| accessdate = }}</ref>


<!-- The PBB_Summary template is automatically maintained by Protein Box Bot.  See Template:PBB_Controls to Stop updates. -->
<!-- The PBB_Summary template is automatically maintained by Protein Box Bot.  See Template:PBB_Controls to Stop updates. -->
{{PBB_Summary
{{PBB_Summary
| section_title =  
| section_title =  
| summary_text = This gene belongs to the subfamily of ubiquitously expressed heterogeneous nuclear ribonucleoproteins (hnRNPs). The hnRNPs are RNA binding proteins that complex with heterogeneous nuclear RNA (hnRNA). These proteins are associated with pre-mRNAs in the nucleus and regulate alternative splicing, polyadenylation, and other aspects of mRNA metabolism and transport. While all of the hnRNPs are present in the nucleus, some seem to shuttle between the nucleus and the cytoplasm. The hnRNP proteins have distinct nucleic acid binding properties. The protein encoded by this gene has three repeats of quasi-RRM domains that bind to RNAs which have guanosine-rich sequences. This protein is very similar to the family member hnRPH. Multiple alternatively spliced variants, encoding the same protein, have been identified.<ref name="entrez">{{cite web | title = Entrez Gene: HNRPF heterogeneous nuclear ribonucleoprotein F| url = http://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=3185| accessdate = }}</ref>
| summary_text = This gene belongs to the subfamily of ubiquitously expressed heterogeneous nuclear ribonucleoproteins (hnRNPs). The hnRNPs are RNA binding proteins that complex with heterogeneous nuclear RNA (hnRNA). These proteins are associated with pre-mRNAs in the nucleus and regulate alternative splicing, polyadenylation, and other aspects of mRNA metabolism and transport. While all of the hnRNPs are present in the nucleus, some seem to shuttle between the nucleus and the cytoplasm. The hnRNP proteins have distinct nucleic acid binding properties. The protein encoded by this gene has three repeats of quasi-RRM domains that bind to RNAs which have guanosine-rich sequences. This protein is very similar to the family member hnRPH. Multiple alternatively spliced variants, encoding the same protein, have been identified.<ref name="entrez">{{cite web | title = Entrez Gene: HNRPF heterogeneous nuclear ribonucleoprotein F| url = https://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=3185| accessdate = }}</ref>
}}
}}


==References==
==References==
{{reflist|2}}
{{reflist}}
 
==Further reading==
==Further reading==
{{refbegin | 2}}
{{refbegin | 2}}
{{PBB_Further_reading  
{{PBB_Further_reading  
| citations =  
| citations =  
*{{cite journal | author=McDonald H, Smailus D, Jenkins H, ''et al.'' |title=Identification and characterization of a gene at D10S94 in the MEN2A region. |journal=Genomics |volume=13 |issue= 2 |pages= 344-8 |year= 1992 |pmid= 1351868 |doi=  }}
*{{cite journal   |vauthors=McDonald H, Smailus D, Jenkins H, etal |title=Identification and characterization of a gene at D10S94 in the MEN2A region. |journal=Genomics |volume=13 |issue= 2 |pages= 344–8 |year= 1992 |pmid= 1351868 |doi=10.1016/0888-7543(92)90251-M }}
*{{cite journal  | author=Honoré B, Rasmussen HH, Vorum H, ''et al.'' |title=Heterogeneous nuclear ribonucleoproteins H, H', and F are members of a ubiquitously expressed subfamily of related but distinct proteins encoded by genes mapping to different chromosomes. |journal=J. Biol. Chem. |volume=270 |issue= 48 |pages= 28780-9 |year= 1996 |pmid= 7499401 |doi= }}
*{{cite journal  |vauthors=Matunis MJ, Xing J, Dreyfuss G |title=The hnRNP F protein: unique primary structure, nucleic acid-binding properties, and subcellular localization. |journal=Nucleic Acids Res. |volume=22 |issue= 6 |pages= 1059–67 |year= 1994 |pmid= 7512260 |doi=10.1093/nar/22.6.1059  | pmc=307930  }}
*{{cite journal  | author=Matunis MJ, Xing J, Dreyfuss G |title=The hnRNP F protein: unique primary structure, nucleic acid-binding properties, and subcellular localization. |journal=Nucleic Acids Res. |volume=22 |issue= 6 |pages= 1059-67 |year= 1994 |pmid= 7512260 |doi=  }}
*{{cite journal  |vauthors=Gamberi C, Izaurralde E, Beisel C, Mattaj IW |title=Interaction between the human nuclear cap-binding protein complex and hnRNP F. |journal=Mol. Cell. Biol. |volume=17 |issue= 5 |pages= 2587–97 |year= 1997 |pmid= 9111328 |doi= | pmc=232108 }}
*{{cite journal  | author=Gamberi C, Izaurralde E, Beisel C, Mattaj IW |title=Interaction between the human nuclear cap-binding protein complex and hnRNP F. |journal=Mol. Cell. Biol. |volume=17 |issue= 5 |pages= 2587-97 |year= 1997 |pmid= 9111328 |doi=  }}
*{{cite journal  |vauthors=Chou MY, Rooke N, Turck CW, Black DL |title=hnRNP H is a component of a splicing enhancer complex that activates a c-src alternative exon in neuronal cells. |journal=Mol. Cell. Biol. |volume=19 |issue= 1 |pages= 69–77 |year= 1999 |pmid= 9858532 |doi=  | pmc=83866  }}
*{{cite journal  | author=Chou MY, Rooke N, Turck CW, Black DL |title=hnRNP H is a component of a splicing enhancer complex that activates a c-src alternative exon in neuronal cells. |journal=Mol. Cell. Biol. |volume=19 |issue= 1 |pages= 69-77 |year= 1999 |pmid= 9858532 |doi=  }}
*{{cite journal  |vauthors=Honoré B, Vorum H, Baandrup U |title=hnRNPs H, H' and F behave differently with respect to posttranslational cleavage and subcellular localization. |journal=FEBS Lett. |volume=456 |issue= 2 |pages= 274–80 |year= 1999 |pmid= 10456323 |doi=10.1016/S0014-5793(99)00911-4 }}
*{{cite journal | author=Honoré B, Vorum H, Baandrup U |title=hnRNPs H, H' and F behave differently with respect to posttranslational cleavage and subcellular localization. |journal=FEBS Lett. |volume=456 |issue= 2 |pages= 274-80 |year= 1999 |pmid= 10456323 |doi=  }}
*{{cite journal   |vauthors=Yoshida T, Kokura K, Makino Y, etal |title=Heterogeneous nuclear RNA-ribonucleoprotein F binds to DNA via an oligo(dG)-motif and is associated with RNA polymerase II. |journal=Genes Cells |volume=4 |issue= 12 |pages= 707–19 |year= 2000 |pmid= 10620016 |doi=10.1046/j.1365-2443.1999.00295.x }}
*{{cite journal | author=Yoshida T, Kokura K, Makino Y, ''et al.'' |title=Heterogeneous nuclear RNA-ribonucleoprotein F binds to DNA via an oligo(dG)-motif and is associated with RNA polymerase II. |journal=Genes Cells |volume=4 |issue= 12 |pages= 707-19 |year= 2000 |pmid= 10620016 |doi=  }}
*{{cite journal   |vauthors=Markovtsov V, Nikolic JM, Goldman JA, etal |title=Cooperative assembly of an hnRNP complex induced by a tissue-specific homolog of polypyrimidine tract binding protein. |journal=Mol. Cell. Biol. |volume=20 |issue= 20 |pages= 7463–79 |year= 2000 |pmid= 11003644 |doi=10.1128/MCB.20.20.7463-7479.2000 | pmc=86300  }}
*{{cite journal | author=Markovtsov V, Nikolic JM, Goldman JA, ''et al.'' |title=Cooperative assembly of an hnRNP complex induced by a tissue-specific homolog of polypyrimidine tract binding protein. |journal=Mol. Cell. Biol. |volume=20 |issue= 20 |pages= 7463-79 |year= 2000 |pmid= 11003644 |doi=  }}
*{{cite journal   |vauthors=Zhang Y, Lindblom T, Chang A, etal |title=Evidence that dim1 associates with proteins involved in pre-mRNA splicing, and delineation of residues essential for dim1 interactions with hnRNP F and Npw38/PQBP-1. |journal=Gene |volume=257 |issue= 1 |pages= 33–43 |year= 2001 |pmid= 11054566 |doi=10.1016/S0378-1119(00)00372-3 }}
*{{cite journal | author=Zhang Y, Lindblom T, Chang A, ''et al.'' |title=Evidence that dim1 associates with proteins involved in pre-mRNA splicing, and delineation of residues essential for dim1 interactions with hnRNP F and Npw38/PQBP-1. |journal=Gene |volume=257 |issue= 1 |pages= 33-43 |year= 2001 |pmid= 11054566 |doi= }}
*{{cite journal   |vauthors=Veraldi KL, Arhin GK, Martincic K, etal |title=hnRNP F influences binding of a 64-kilodalton subunit of cleavage stimulation factor to mRNA precursors in mouse B cells. |journal=Mol. Cell. Biol. |volume=21 |issue= 4 |pages= 1228–38 |year= 2001 |pmid= 11158309 |doi= 10.1128/MCB.21.4.1228-1238.2001 | pmc=99576 }}
*{{cite journal | author=Veraldi KL, Arhin GK, Martincic K, ''et al.'' |title=hnRNP F influences binding of a 64-kilodalton subunit of cleavage stimulation factor to mRNA precursors in mouse B cells. |journal=Mol. Cell. Biol. |volume=21 |issue= 4 |pages= 1228-38 |year= 2001 |pmid= 11158309 |doi= 10.1128/MCB.21.4.1228-1238.2001 }}
*{{cite journal   |vauthors=Jia L, Young MF, Powell J, etal |title=Gene expression profile of human bone marrow stromal cells: high-throughput expressed sequence tag sequencing analysis. |journal=Genomics |volume=79 |issue= 1 |pages= 7–17 |year= 2002 |pmid= 11827452 |doi= 10.1006/geno.2001.6683 }}
*{{cite journal | author=Jia L, Young MF, Powell J, ''et al.'' |title=Gene expression profile of human bone marrow stromal cells: high-throughput expressed sequence tag sequencing analysis. |journal=Genomics |volume=79 |issue= 1 |pages= 7-17 |year= 2002 |pmid= 11827452 |doi= 10.1006/geno.2001.6683 }}
*{{cite journal   |vauthors=Jurica MS, Licklider LJ, Gygi SR, etal |title=Purification and characterization of native spliceosomes suitable for three-dimensional structural analysis. |journal=RNA |volume=8 |issue= 4 |pages= 426–39 |year= 2002 |pmid= 11991638 |doi=10.1017/S1355838202021088  | pmc=1370266  }}
*{{cite journal | author=Jurica MS, Licklider LJ, Gygi SR, ''et al.'' |title=Purification and characterization of native spliceosomes suitable for three-dimensional structural analysis. |journal=RNA |volume=8 |issue= 4 |pages= 426-39 |year= 2002 |pmid= 11991638 |doi=  }}
*{{cite journal   |vauthors=Angenstein F, Evans AM, Settlage RE, etal |title=A receptor for activated C kinase is part of messenger ribonucleoprotein complexes associated with polyA-mRNAs in neurons. |journal=J. Neurosci. |volume=22 |issue= 20 |pages= 8827–37 |year= 2002 |pmid= 12388589 |doi=  }}
*{{cite journal | author=Angenstein F, Evans AM, Settlage RE, ''et al.'' |title=A receptor for activated C kinase is part of messenger ribonucleoprotein complexes associated with polyA-mRNAs in neurons. |journal=J. Neurosci. |volume=22 |issue= 20 |pages= 8827-37 |year= 2002 |pmid= 12388589 |doi=  }}
*{{cite journal   |vauthors=Strausberg RL, Feingold EA, Grouse LH, etal |title=Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. |journal=Proc. Natl. Acad. Sci. U.S.A. |volume=99 |issue= 26 |pages= 16899–903 |year= 2003 |pmid= 12477932 |doi= 10.1073/pnas.242603899 | pmc=139241 }}
*{{cite journal | author=Strausberg RL, Feingold EA, Grouse LH, ''et al.'' |title=Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. |journal=Proc. Natl. Acad. Sci. U.S.A. |volume=99 |issue= 26 |pages= 16899-903 |year= 2003 |pmid= 12477932 |doi= 10.1073/pnas.242603899 }}
*{{cite journal   |vauthors=Ota T, Suzuki Y, Nishikawa T, etal |title=Complete sequencing and characterization of 21,243 full-length human cDNAs. |journal=Nat. Genet. |volume=36 |issue= 1 |pages= 40–5 |year= 2004 |pmid= 14702039 |doi= 10.1038/ng1285 }}
*{{cite journal  | author=Ota T, Suzuki Y, Nishikawa T, ''et al.'' |title=Complete sequencing and characterization of 21,243 full-length human cDNAs. |journal=Nat. Genet. |volume=36 |issue= 1 |pages= 40-5 |year= 2004 |pmid= 14702039 |doi= 10.1038/ng1285 }}
*{{cite journal  |vauthors=Honoré B, Baandrup U, Vorum H |title=Heterogeneous nuclear ribonucleoproteins F and H/H' show differential expression in normal and selected cancer tissues. |journal=Exp. Cell Res. |volume=294 |issue= 1 |pages= 199–209 |year= 2004 |pmid= 14980514 |doi= 10.1016/j.yexcr.2003.11.011 }}
*{{cite journal | author=Honoré B, Baandrup U, Vorum H |title=Heterogeneous nuclear ribonucleoproteins F and H/H' show differential expression in normal and selected cancer tissues. |journal=Exp. Cell Res. |volume=294 |issue= 1 |pages= 199-209 |year= 2004 |pmid= 14980514 |doi= 10.1016/j.yexcr.2003.11.011 }}
*{{cite journal   |vauthors=Deloukas P, Earthrowl ME, Grafham DV, etal |title=The DNA sequence and comparative analysis of human chromosome 10. |journal=Nature |volume=429 |issue= 6990 |pages= 375–81 |year= 2004 |pmid= 15164054 |doi= 10.1038/nature02462 }}
*{{cite journal | author=Deloukas P, Earthrowl ME, Grafham DV, ''et al.'' |title=The DNA sequence and comparative analysis of human chromosome 10. |journal=Nature |volume=429 |issue= 6990 |pages= 375-81 |year= 2004 |pmid= 15164054 |doi= 10.1038/nature02462 }}
*{{cite journal   |vauthors=Beausoleil SA, Jedrychowski M, Schwartz D, etal |title=Large-scale characterization of HeLa cell nuclear phosphoproteins. |journal=Proc. Natl. Acad. Sci. U.S.A. |volume=101 |issue= 33 |pages= 12130–5 |year= 2004 |pmid= 15302935 |doi= 10.1073/pnas.0404720101  | pmc=514446 }}
*{{cite journal | author=Beausoleil SA, Jedrychowski M, Schwartz D, ''et al.'' |title=Large-scale characterization of HeLa cell nuclear phosphoproteins. |journal=Proc. Natl. Acad. Sci. U.S.A. |volume=101 |issue= 33 |pages= 12130-5 |year= 2004 |pmid= 15302935 |doi= 10.1073/pnas.0404720101 }}
*{{cite journal   |vauthors=Gerhard DS, Wagner L, Feingold EA, etal |title=The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). |journal=Genome Res. |volume=14 |issue= 10B |pages= 2121–7 |year= 2004 |pmid= 15489334 |doi= 10.1101/gr.2596504 | pmc=528928 }}
*{{cite journal | author=Gerhard DS, Wagner L, Feingold EA, ''et al.'' |title=The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). |journal=Genome Res. |volume=14 |issue= 10B |pages= 2121-7 |year= 2004 |pmid= 15489334 |doi= 10.1101/gr.2596504 }}
*{{cite journal   |vauthors=Rush J, Moritz A, Lee KA, etal |title=Immunoaffinity profiling of tyrosine phosphorylation in cancer cells. |journal=Nat. Biotechnol. |volume=23 |issue= 1 |pages= 94–101 |year= 2005 |pmid= 15592455 |doi= 10.1038/nbt1046 }}
*{{cite journal | author=Rush J, Moritz A, Lee KA, ''et al.'' |title=Immunoaffinity profiling of tyrosine phosphorylation in cancer cells. |journal=Nat. Biotechnol. |volume=23 |issue= 1 |pages= 94-101 |year= 2005 |pmid= 15592455 |doi= 10.1038/nbt1046 }}
}}
}}
{{refend}}
{{refend}}
{{PDB Gallery|geneid=3185}}
<!-- The PBB_Controls template provides controls for Protein Box Bot, please see Template:PBB_Controls for details. -->
{{PBB_Controls
| update_page = yes
| require_manual_inspection = no
| update_protein_box = yes
| update_summary = yes
| update_citations = yes
}}


{{protein-stub}}
{{gene-10-stub}}
{{WikiDoc Sources}}

Latest revision as of 13:58, 31 August 2017

VALUE_ERROR (nil)
Identifiers
Aliases
External IDsGeneCards: [1]
Orthologs
SpeciesHumanMouse
Entrez
Ensembl
UniProt
RefSeq (mRNA)

n/a

n/a

RefSeq (protein)

n/a

n/a

Location (UCSC)n/an/a
PubMed searchn/an/a
Wikidata
View/Edit Human

Heterogeneous nuclear ribonucleoprotein F is a protein that in humans is encoded by the HNRNPF gene.[1][2]

This gene belongs to the subfamily of ubiquitously expressed heterogeneous nuclear ribonucleoproteins (hnRNPs). The hnRNPs are RNA binding proteins that complex with heterogeneous nuclear RNA (hnRNA). These proteins are associated with pre-mRNAs in the nucleus and regulate alternative splicing, polyadenylation, and other aspects of mRNA metabolism and transport. While all of the hnRNPs are present in the nucleus, some seem to shuttle between the nucleus and the cytoplasm. The hnRNP proteins have distinct nucleic acid binding properties. The protein encoded by this gene has three repeats of quasi-RRM domains that bind to RNAs which have guanosine-rich sequences. This protein is very similar to the family member hnRPH. Multiple alternatively spliced variants, encoding the same protein, have been identified.[2]

References

  1. Honore B, Rasmussen HH, Vorum H, Dejgaard K, Liu X, Gromov P, Madsen P, Gesser B, Tommerup N, Celis JE (Jan 1996). "Heterogeneous nuclear ribonucleoproteins H, H', and F are members of a ubiquitously expressed subfamily of related but distinct proteins encoded by genes mapping to different chromosomes". J Biol Chem. 270 (48): 28780–9. doi:10.1074/jbc.270.48.28780. PMID 7499401.
  2. 2.0 2.1 "Entrez Gene: HNRPF heterogeneous nuclear ribonucleoprotein F".

Further reading