RAB18: Difference between revisions

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{{Infobox_gene}}
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'''Ras-related protein Rab-18''' is a [[protein]] that in humans is encoded by the ''RAB18'' [[gene]].<ref name="pmid10648831">{{cite journal | vauthors = Schafer U, Seibold S, Schneider A, Neugebauer E | title = Isolation and characterisation of the human rab18 gene after stimulation of endothelial cells with histamine | journal = FEBS Lett | volume = 466 | issue = 1 | pages = 148–54 |date=Feb 2000 | pmid = 10648831 | pmc =  | doi =10.1016/S0014-5793(99)01778-0  }}</ref><ref name="entrez">{{cite web | title = Entrez Gene: RAB18 RAB18, member RAS oncogene family| url = https://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=22931| accessdate = }}</ref>
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<!-- The GNF_Protein_box is automatically maintained by Protein Box Bot.  See Template:PBB_Controls to Stop updates. -->
Rab18 is a ubiquitously expressed protein with particularly high expression in the [[brain]].<ref name="Lütcke_1994">{{cite journal | vauthors = Lütcke A, Parton RG, Murphy C, Olkkonen VM, Dupree P, Valencia A, Simons K, Zerial M | title = Cloning and subcellular localization of novel rab proteins reveals polarized and cell type-specific expression | journal = J. Cell Sci. | volume = 107 | issue = 12| pages = 3437–48 |date=December 1994 | pmid = 7706395 | doi = | url = }}</ref> Rab18 was first characterised as an [[endosomal]] protein in [[epithelium|epithelial]] cells of mouse kidney and intestines.<ref name="Lütcke_1994"/> Subsequent studies revealed that Rab18 has a wide intracellular distribution; localising to the [[Golgi complex]], [[endoplasmic reticulum]], lipid droplets, and [[cytosol]] of various cell types.<ref name="Dejgaard_2008">{{cite journal | vauthors = Dejgaard SY, Murshid A, Erman A, Kizilay O, Verbich D, Lodge R, Dejgaard K, Ly-Hartig TB, Pepperkok R, Simpson JC, Presley JF | title = Rab18 and Rab43 have key roles in ER-Golgi trafficking | journal = J. Cell Sci. | volume = 121 | issue = Pt 16 | pages = 2768–81 |date=August 2008 | pmid = 18664496 | doi = 10.1242/jcs.021808 }}</ref><ref name="Martin_2005">{{cite journal | vauthors = Martin S, Driessen K, Nixon SJ, Zerial M, Parton RG | title = Regulated localization of Rab18 to lipid droplets: effects of lipolytic stimulation and inhibition of lipid droplet catabolism | journal = J. Biol. Chem. | volume = 280 | issue = 51 | pages = 42325–35 |date=December 2005 | pmid = 16207721 | doi = 10.1074/jbc.M506651200 }}</ref><ref name="Ozeki_2005">{{cite journal | vauthors = Ozeki S, Cheng J, Tauchi-Sato K, Hatano N, Taniguchi H, Fujimoto T | title = Rab18 localizes to lipid droplets and induces their close apposition to the endoplasmic reticulum-derived membrane | journal = J. Cell Sci. | volume = 118 | issue = Pt 12 | pages = 2601–11 |date=June 2005 | pmid = 15914536 | doi = 10.1242/jcs.02401 | url = }}</ref> In the brain, Rab18 has been isolated in association with [[synaptic vesicle]]s<ref name="Burré_2006">{{cite journal | vauthors = Burré J, Beckhaus T, Corvey C, Karas M, Zimmermann H, Volknandt W | title = Synaptic vesicle proteins under conditions of rest and activation: analysis by 2-D difference gel electrophoresis | journal = Electrophoresis | volume = 27 | issue = 17 | pages = 3488–96 |date=September 2006 | pmid = 16944461 | doi = 10.1002/elps.200500864 }}</ref><ref name="Takamori_2006">{{cite journal | vauthors = Takamori S, Holt M, Stenius K, Lemke EA, Grønborg M, Riedel D, Urlaub H, Schenck S, Brügger B, Ringler P, Müller SA, Rammner B, Gräter F, Hub JS, De Groot BL, Mieskes G, Moriyama Y, Klingauf J, Grubmüller H, Heuser J, Wieland F, Jahn R | title = Molecular anatomy of a trafficking organelle | journal = Cell | volume = 127 | issue = 4 | pages = 831–46 |date=November 2006 | pmid = 17110340 | doi = 10.1016/j.cell.2006.10.030  }}</ref> and has been observed to localise to secretory granules in neuroendocrine cells.<ref name="Vazquez-Martinez_2007">{{cite journal | vauthors = Vazquez-Martinez R, Cruz-Garcia D, Duran-Prado M, Peinado JR, Castaño JP, Malagon MM | title = Rab18 inhibits secretory activity in neuroendocrine cells by interacting with secretory granules | journal = Traffic | volume = 8 | issue = 7 | pages = 867–82 |date=July 2007 | pmid = 17488286 | doi = 10.1111/j.1600-0854.2007.00570.x }}</ref>
{{GNF_Protein_box
| image = PBB_Protein_RAB18_image.jpg
| image_source = [[Protein_Data_Bank|PDB]] rendering based on 1x3s.
| PDB = {{PDB2|1x3s}}
| Name = RAB18, member RAS oncogene family
| HGNCid = 14244
| Symbol = RAB18
| AltSymbols =; RAB18LI1
| OMIM = 602207
| ECnumber =
| Homologene = 40765
| MGIid = 102790
| Function = {{GNF_GO|id=GO:0000166 |text = nucleotide binding}} {{GNF_GO|id=GO:0003924 |text = GTPase activity}} {{GNF_GO|id=GO:0005524 |text = ATP binding}} {{GNF_GO|id=GO:0005525 |text = GTP binding}} {{GNF_GO|id=GO:0008134 |text = transcription factor binding}}
| Component = {{GNF_GO|id=GO:0005575 |text = cellular_component}} {{GNF_GO|id=GO:0005622 |text = intracellular}} {{GNF_GO|id=GO:0016020 |text = membrane}}
| Process = {{GNF_GO|id=GO:0006355 |text = regulation of transcription, DNA-dependent}} {{GNF_GO|id=GO:0006897 |text = endocytosis}} {{GNF_GO|id=GO:0007264 |text = small GTPase mediated signal transduction}} {{GNF_GO|id=GO:0015031 |text = protein transport}}
| Orthologs = {{GNF_Ortholog_box
    | Hs_EntrezGene = 22931
    | Hs_Ensembl = ENSG00000099246
    | Hs_RefseqProtein = NP_067075
    | Hs_RefseqmRNA = NM_021252
    | Hs_GenLoc_db =
    | Hs_GenLoc_chr = 10
    | Hs_GenLoc_start = 27833203
    | Hs_GenLoc_end = 27869098
    | Hs_Uniprot = Q9NP72
    | Mm_EntrezGene = 19330
    | Mm_Ensembl = ENSMUSG00000073639
    | Mm_RefseqmRNA = NM_011225
    | Mm_RefseqProtein = NP_035355
    | Mm_GenLoc_db =
    | Mm_GenLoc_chr = 18
    | Mm_GenLoc_start = 6765203
    | Mm_GenLoc_end = 6790229
    | Mm_Uniprot = Q0PD38
  }}
}}
'''RAB18, member RAS oncogene family''', also known as '''RAB18''', is a human [[gene]].<ref name="entrez">{{cite web | title = Entrez Gene: RAB18 RAB18, member RAS oncogene family| url = http://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=22931| accessdate = }}</ref>
 
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==References==
==References==
{{reflist|2}}
{{reflist|2}}
==Further reading==
==Further reading==
{{refbegin | 2}}
{{refbegin | 2}}
{{PBB_Further_reading
*{{cite journal   |vauthors=Adams MD, Kerlavage AR, Fleischmann RD, etal |title=Initial assessment of human gene diversity and expression patterns based upon 83 million nucleotides of cDNA sequence. |journal=Nature |volume=377 |issue= 6547 Suppl |pages= 3–174 |year= 1995 |pmid= 7566098 |doi=<!-- none available --> |url=http://www.columbia.edu/itc/biology/pollack/w4065/client_edit/readings/nature377_3.pdf | format=PDF  }}
| citations =
*{{cite journal  | vauthors=Maruyama K, Sugano S |title=Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides. |journal=Gene |volume=138 |issue= 1-2 |pages= 171–4 |year= 1994 |pmid= 8125298 |doi=10.1016/0378-1119(94)90802-8 }}
*{{cite journal | author=Adams MD, Kerlavage AR, Fleischmann RD, ''et al.'' |title=Initial assessment of human gene diversity and expression patterns based upon 83 million nucleotides of cDNA sequence. |journal=Nature |volume=377 |issue= 6547 Suppl |pages= 3-174 |year= 1995 |pmid= 7566098 |doi= }}
*{{cite journal   |vauthors=Hillier LD, Lennon G, Becker M, etal |title=Generation and analysis of 280,000 human expressed sequence tags. |journal=Genome Res. |volume=6 |issue= 9 |pages= 807–28 |year= 1997 |pmid= 8889549 |doi=10.1101/gr.6.9.807 }}
*{{cite journal  | author=Lütcke A, Parton RG, Murphy C, ''et al.'' |title=Cloning and subcellular localization of novel rab proteins reveals polarized and cell type-specific expression. |journal=J. Cell. Sci. |volume=107 ( Pt 12) |issue=  |pages= 3437-48 |year= 1995 |pmid= 7706395 |doi=  }}
*{{cite journal   |vauthors=Suzuki Y, Yoshitomo-Nakagawa K, Maruyama K, etal |title=Construction and characterization of a full length-enriched and a 5'-end-enriched cDNA library. |journal=Gene |volume=200 |issue= 1-2 |pages= 149–56 |year= 1997 |pmid= 9373149 |doi=10.1016/S0378-1119(97)00411-3 }}
*{{cite journal  | author=Maruyama K, Sugano S |title=Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides. |journal=Gene |volume=138 |issue= 1-2 |pages= 171-4 |year= 1994 |pmid= 8125298 |doi=  }}
*{{cite journal   |vauthors=Hu RM, Han ZG, Song HD, etal |title=Gene expression profiling in the human hypothalamus-pituitary-adrenal axis and full-length cDNA cloning. |journal=Proc. Natl. Acad. Sci. U.S.A. |volume=97 |issue= 17 |pages= 9543–8 |year= 2000 |pmid= 10931946 |doi= 10.1073/pnas.160270997 | pmc=16901 }}
*{{cite journal | author=Hillier LD, Lennon G, Becker M, ''et al.'' |title=Generation and analysis of 280,000 human expressed sequence tags. |journal=Genome Res. |volume=6 |issue= 9 |pages= 807-28 |year= 1997 |pmid= 8889549 |doi=  }}
*{{cite journal  | vauthors=Hartley JL, Temple GF, Brasch MA |title=DNA cloning using in vitro site-specific recombination. |journal=Genome Res. |volume=10 |issue= 11 |pages= 1788–95 |year= 2001 |pmid= 11076863 |doi= 10.1101/gr.143000| pmc=310948 }}
*{{cite journal | author=Suzuki Y, Yoshitomo-Nakagawa K, Maruyama K, ''et al.'' |title=Construction and characterization of a full length-enriched and a 5'-end-enriched cDNA library. |journal=Gene |volume=200 |issue= 1-2 |pages= 149-56 |year= 1997 |pmid= 9373149 |doi= }}
*{{cite journal   |vauthors=Wiemann S, Weil B, Wellenreuther R, etal |title=Toward a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. |journal=Genome Res. |volume=11 |issue= 3 |pages= 422–35 |year= 2001 |pmid= 11230166 |doi= 10.1101/gr.GR1547R  | pmc=311072 }}
*{{cite journal  | author=Schäfer U, Seibold S, Schneider A, Neugebauer E |title=Isolation and characterisation of the human rab18 gene after stimulation of endothelial cells with histamine. |journal=FEBS Lett. |volume=466 |issue= 1 |pages= 148-54 |year= 2000 |pmid= 10648831 |doi= }}
*{{cite journal   |vauthors=Simpson JC, Wellenreuther R, Poustka A, etal |title=Systematic subcellular localization of novel proteins identified by large-scale cDNA sequencing. |journal=EMBO Rep. |volume=1 |issue= 3 |pages= 287–92 |year= 2001 |pmid= 11256614 |doi= 10.1093/embo-reports/kvd058 | pmc=1083732 }}
*{{cite journal | author=Hu RM, Han ZG, Song HD, ''et al.'' |title=Gene expression profiling in the human hypothalamus-pituitary-adrenal axis and full-length cDNA cloning. |journal=Proc. Natl. Acad. Sci. U.S.A. |volume=97 |issue= 17 |pages= 9543-8 |year= 2000 |pmid= 10931946 |doi= 10.1073/pnas.160270997 }}
*{{cite journal   |vauthors=Strausberg RL, Feingold EA, Grouse LH, etal |title=Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. |journal=Proc. Natl. Acad. Sci. U.S.A. |volume=99 |issue= 26 |pages= 16899–903 |year= 2003 |pmid= 12477932 |doi= 10.1073/pnas.242603899 | pmc=139241 }}
*{{cite journal  | author=Hartley JL, Temple GF, Brasch MA |title=DNA cloning using in vitro site-specific recombination. |journal=Genome Res. |volume=10 |issue= 11 |pages= 1788-95 |year= 2001 |pmid= 11076863 |doi=  }}
*{{cite journal   |vauthors=Behrends U, Schneider I, Rössler S, etal |title=Novel tumor antigens identified by autologous antibody screening of childhood medulloblastoma cDNA libraries. |journal=Int. J. Cancer |volume=106 |issue= 2 |pages= 244–51 |year= 2003 |pmid= 12800201 |doi= 10.1002/ijc.11208 }}
*{{cite journal | author=Wiemann S, Weil B, Wellenreuther R, ''et al.'' |title=Toward a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. |journal=Genome Res. |volume=11 |issue= 3 |pages= 422-35 |year= 2001 |pmid= 11230166 |doi= 10.1101/gr.154701 }}
*{{cite journal   |vauthors=Ota T, Suzuki Y, Nishikawa T, etal |title=Complete sequencing and characterization of 21,243 full-length human cDNAs. |journal=Nat. Genet. |volume=36 |issue= 1 |pages= 40–5 |year= 2004 |pmid= 14702039 |doi= 10.1038/ng1285 }}
*{{cite journal | author=Simpson JC, Wellenreuther R, Poustka A, ''et al.'' |title=Systematic subcellular localization of novel proteins identified by large-scale cDNA sequencing. |journal=EMBO Rep. |volume=1 |issue= 3 |pages= 287-92 |year= 2001 |pmid= 11256614 |doi= 10.1093/embo-reports/kvd058 }}
*{{cite journal   |vauthors=Deloukas P, Earthrowl ME, Grafham DV, etal |title=The DNA sequence and comparative analysis of human chromosome 10. |journal=Nature |volume=429 |issue= 6990 |pages= 375–81 |year= 2004 |pmid= 15164054 |doi= 10.1038/nature02462 }}
*{{cite journal | author=Strausberg RL, Feingold EA, Grouse LH, ''et al.'' |title=Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. |journal=Proc. Natl. Acad. Sci. U.S.A. |volume=99 |issue= 26 |pages= 16899-903 |year= 2003 |pmid= 12477932 |doi= 10.1073/pnas.242603899 }}
*{{cite journal   |vauthors=Gerhard DS, Wagner L, Feingold EA, etal |title=The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). |journal=Genome Res. |volume=14 |issue= 10B |pages= 2121–7 |year= 2004 |pmid= 15489334 |doi= 10.1101/gr.2596504 | pmc=528928 }}
*{{cite journal | author=Behrends U, Schneider I, Rössler S, ''et al.'' |title=Novel tumor antigens identified by autologous antibody screening of childhood medulloblastoma cDNA libraries. |journal=Int. J. Cancer |volume=106 |issue= 2 |pages= 244-51 |year= 2003 |pmid= 12800201 |doi= 10.1002/ijc.11208 }}
*{{cite journal   |vauthors=Wiemann S, Arlt D, Huber W, etal |title=From ORFeome to biology: a functional genomics pipeline. |journal=Genome Res. |volume=14 |issue= 10B |pages= 2136–44 |year= 2004 |pmid= 15489336 |doi= 10.1101/gr.2576704  | pmc=528930 }}
*{{cite journal | author=Ota T, Suzuki Y, Nishikawa T, ''et al.'' |title=Complete sequencing and characterization of 21,243 full-length human cDNAs. |journal=Nat. Genet. |volume=36 |issue= 1 |pages= 40-5 |year= 2004 |pmid= 14702039 |doi= 10.1038/ng1285 }}
*{{cite journal   |vauthors=Dou T, Ji C, Gu S, etal |title=Cloning and characterization of a novel splice variant of human Rab18 gene (RAB18). |journal=DNA Seq. |volume=16 |issue= 3 |pages= 230–4 |year= 2006 |pmid= 16147880 |doi= 10.1080/10425170500061681 }}
*{{cite journal | author=Deloukas P, Earthrowl ME, Grafham DV, ''et al.'' |title=The DNA sequence and comparative analysis of human chromosome 10. |journal=Nature |volume=429 |issue= 6990 |pages= 375-81 |year= 2004 |pmid= 15164054 |doi= 10.1038/nature02462 }}
*{{cite journal   |vauthors=Mehrle A, Rosenfelder H, Schupp I, etal |title=The LIFEdb database in 2006. |journal=Nucleic Acids Res. |volume=34 |issue= Database issue |pages= D415–8 |year= 2006 |pmid= 16381901 |doi= 10.1093/nar/gkj139 | pmc=1347501 }}
*{{cite journal | author=Gerhard DS, Wagner L, Feingold EA, ''et al.'' |title=The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). |journal=Genome Res. |volume=14 |issue= 10B |pages= 2121-7 |year= 2004 |pmid= 15489334 |doi= 10.1101/gr.2596504 }}
*{{cite journal | author=Wiemann S, Arlt D, Huber W, ''et al.'' |title=From ORFeome to biology: a functional genomics pipeline. |journal=Genome Res. |volume=14 |issue= 10B |pages= 2136-44 |year= 2004 |pmid= 15489336 |doi= 10.1101/gr.2576704 }}
*{{cite journal | author=Ozeki S, Cheng J, Tauchi-Sato K, ''et al.'' |title=Rab18 localizes to lipid droplets and induces their close apposition to the endoplasmic reticulum-derived membrane. |journal=J. Cell. Sci. |volume=118 |issue= Pt 12 |pages= 2601-11 |year= 2005 |pmid= 15914536 |doi= 10.1242/jcs.02401 }}
*{{cite journal | author=Dou T, Ji C, Gu S, ''et al.'' |title=Cloning and characterization of a novel splice variant of human Rab18 gene (RAB18). |journal=DNA Seq. |volume=16 |issue= 3 |pages= 230-4 |year= 2006 |pmid= 16147880 |doi= 10.1080/10425170500061681 }}
*{{cite journal | author=Martin S, Driessen K, Nixon SJ, ''et al.'' |title=Regulated localization of Rab18 to lipid droplets: effects of lipolytic stimulation and inhibition of lipid droplet catabolism. |journal=J. Biol. Chem. |volume=280 |issue= 51 |pages= 42325-35 |year= 2006 |pmid= 16207721 |doi= 10.1074/jbc.M506651200 }}
*{{cite journal  | author=Mehrle A, Rosenfelder H, Schupp I, ''et al.'' |title=The LIFEdb database in 2006. |journal=Nucleic Acids Res. |volume=34 |issue= Database issue |pages= D415-8 |year= 2006 |pmid= 16381901 |doi= 10.1093/nar/gkj139 }}
}}
{{refend}}
{{refend}}


{{protein-stub}}
{{PDB Gallery|geneid=22931}}
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{{gene-10-stub}}

Latest revision as of 20:41, 8 November 2017

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Identifiers
Aliases
External IDsGeneCards: [1]
Orthologs
SpeciesHumanMouse
Entrez

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Ensembl

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UniProt

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RefSeq (mRNA)

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RefSeq (protein)

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Location (UCSC)n/an/a
PubMed searchn/an/a
Wikidata
View/Edit Human

Ras-related protein Rab-18 is a protein that in humans is encoded by the RAB18 gene.[1][2]

Rab18 is a ubiquitously expressed protein with particularly high expression in the brain.[3] Rab18 was first characterised as an endosomal protein in epithelial cells of mouse kidney and intestines.[3] Subsequent studies revealed that Rab18 has a wide intracellular distribution; localising to the Golgi complex, endoplasmic reticulum, lipid droplets, and cytosol of various cell types.[4][5][6] In the brain, Rab18 has been isolated in association with synaptic vesicles[7][8] and has been observed to localise to secretory granules in neuroendocrine cells.[9]

References

  1. ↑ Schafer U, Seibold S, Schneider A, Neugebauer E (Feb 2000). "Isolation and characterisation of the human rab18 gene after stimulation of endothelial cells with histamine". FEBS Lett. 466 (1): 148–54. doi:10.1016/S0014-5793(99)01778-0. PMID 10648831.
  2. ↑ "Entrez Gene: RAB18 RAB18, member RAS oncogene family".
  3. ↑ 3.0 3.1 Lütcke A, Parton RG, Murphy C, Olkkonen VM, Dupree P, Valencia A, Simons K, Zerial M (December 1994). "Cloning and subcellular localization of novel rab proteins reveals polarized and cell type-specific expression". J. Cell Sci. 107 (12): 3437–48. PMID 7706395.
  4. ↑ Dejgaard SY, Murshid A, Erman A, Kizilay O, Verbich D, Lodge R, Dejgaard K, Ly-Hartig TB, Pepperkok R, Simpson JC, Presley JF (August 2008). "Rab18 and Rab43 have key roles in ER-Golgi trafficking". J. Cell Sci. 121 (Pt 16): 2768–81. doi:10.1242/jcs.021808. PMID 18664496.
  5. ↑ Martin S, Driessen K, Nixon SJ, Zerial M, Parton RG (December 2005). "Regulated localization of Rab18 to lipid droplets: effects of lipolytic stimulation and inhibition of lipid droplet catabolism". J. Biol. Chem. 280 (51): 42325–35. doi:10.1074/jbc.M506651200. PMID 16207721.
  6. ↑ Ozeki S, Cheng J, Tauchi-Sato K, Hatano N, Taniguchi H, Fujimoto T (June 2005). "Rab18 localizes to lipid droplets and induces their close apposition to the endoplasmic reticulum-derived membrane". J. Cell Sci. 118 (Pt 12): 2601–11. doi:10.1242/jcs.02401. PMID 15914536.
  7. ↑ Burré J, Beckhaus T, Corvey C, Karas M, Zimmermann H, Volknandt W (September 2006). "Synaptic vesicle proteins under conditions of rest and activation: analysis by 2-D difference gel electrophoresis". Electrophoresis. 27 (17): 3488–96. doi:10.1002/elps.200500864. PMID 16944461.
  8. ↑ Takamori S, Holt M, Stenius K, Lemke EA, Grønborg M, Riedel D, Urlaub H, Schenck S, Brügger B, Ringler P, Müller SA, Rammner B, Gräter F, Hub JS, De Groot BL, Mieskes G, Moriyama Y, Klingauf J, Grubmüller H, Heuser J, Wieland F, Jahn R (November 2006). "Molecular anatomy of a trafficking organelle". Cell. 127 (4): 831–46. doi:10.1016/j.cell.2006.10.030. PMID 17110340.
  9. ↑ Vazquez-Martinez R, Cruz-Garcia D, Duran-Prado M, Peinado JR, Castaño JP, Malagon MM (July 2007). "Rab18 inhibits secretory activity in neuroendocrine cells by interacting with secretory granules". Traffic. 8 (7): 867–82. doi:10.1111/j.1600-0854.2007.00570.x. PMID 17488286.

Further reading


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