CIRBP: Difference between revisions

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Latest revision as of 19:34, 8 November 2017

Cold-inducible RNA-binding protein is a protein that in humans is encoded by the CIRBP gene.^[1]^[2]^[3] The cold inducible RNA-binding protein CIRBP plays a critical role in controlling the cellular response upon confronting a variety of cellular stresses, including short wavelength ultraviolet light, hypoxia, and hypothermia.

References

↑ Nishiyama H, Higashitsuji H, Yokoi H, Itoh K, Danno S, Matsuda T, Fujita J (Feb 1998). "Cloning and characterization of human CIRP (cold-inducible RNA-binding protein) cDNA and chromosomal assignment of the gene". Gene. 204 (1–2): 115–20. doi:10.1016/S0378-1119(97)00530-1. PMID 9434172.
↑ Nishiyama H, Itoh K, Kaneko Y, Kishishita M, Yoshida O, Fujita J (Jun 1997). "A Glycine-rich RNA-binding Protein Mediating Cold-inducible Suppression of Mammalian Cell Growth". J Cell Biol. 137 (4): 899–908. doi:10.1083/jcb.137.4.899. PMC 2139845. PMID 9151692.
↑ "Entrez Gene: CIRBP cold inducible RNA binding protein".

External links

Human CIRBP genome location and CIRBP gene details page in the UCSC Genome Browser.

Sheikh MS, Carrier F, Papathanasiou MA, et al. (1997). "Identification of several human homologs of hamster DNA damage-inducible transcripts. Cloning and characterization of a novel UV-inducible cDNA that codes for a putative RNA-binding protein". J. Biol. Chem. 272 (42): 26720–6. doi:10.1074/jbc.272.42.26720. PMID 9334257.
Nishiyama H, Danno S, Kaneko Y, et al. (1998). "Decreased expression of cold-inducible RNA-binding protein (CIRP) in male germ cells at elevated temperature". Am. J. Pathol. 152 (1): 289–96. PMC 1858111. PMID 9422546.
Lee J, Bedford MT (2002). "PABP1 identified as an arginine methyltransferase substrate using high-density protein arrays". EMBO Rep. 3 (3): 268–73. doi:10.1093/embo-reports/kvf052. PMC 1084016. PMID 11850402.
Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. doi:10.1073/pnas.242603899. PMC 139241. PMID 12477932.
Hamid AA, Mandai M, Fujita J, et al. (2004). "Expression of cold-inducible RNA-binding protein in the normal endometrium, endometrial hyperplasia, and endometrial carcinoma". Int. J. Gynecol. Pathol. 22 (3): 240–7. doi:10.1097/01.PGP.0000070851.25718.EC. PMID 12819390.
Ota T, Suzuki Y, Nishikawa T, et al. (2004). "Complete sequencing and characterization of 21,243 full-length human cDNAs". Nat. Genet. 36 (1): 40–5. doi:10.1038/ng1285. PMID 14702039.
Grimwood J, Gordon LA, Olsen A, et al. (2004). "The DNA sequence and biology of human chromosome 19". Nature. 428 (6982): 529–35. doi:10.1038/nature02399. PMID 15057824.
Wellmann S, Bührer C, Moderegger E, et al. (2004). "Oxygen-regulated expression of the RNA-binding proteins RBM3 and CIRP by a HIF-1-independent mechanism". J. Cell Sci. 117 (Pt 9): 1785–94. doi:10.1242/jcs.01026. PMID 15075239.
Gerhard DS, Wagner L, Feingold EA, et al. (2004). "The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC)". Genome Res. 14 (10B): 2121–7. doi:10.1101/gr.2596504. PMC 528928. PMID 15489334.
Rual JF, Venkatesan K, Hao T, et al. (2005). "Towards a proteome-scale map of the human protein-protein interaction network". Nature. 437 (7062): 1173–8. doi:10.1038/nature04209. PMID 16189514.
Lim J, Hao T, Shaw C, et al. (2006). "A protein-protein interaction network for human inherited ataxias and disorders of Purkinje cell degeneration". Cell. 125 (4): 801–14. doi:10.1016/j.cell.2006.03.032. PMID 16713569.
Ewing RM, Chu P, Elisma F, et al. (2007). "Large-scale mapping of human protein–protein interactions by mass spectrometry". Mol. Syst. Biol. 3 (1): 89. doi:10.1038/msb4100134. PMC 1847948. PMID 17353931.

This article on a gene on human chromosome 19 is a stub. You can help Wikipedia by expanding it.

[pmid9434172-1] Nishiyama H, Higashitsuji H, Yokoi H, Itoh K, Danno S, Matsuda T, Fujita J (Feb 1998). "Cloning and characterization of human CIRP (cold-inducible RNA-binding protein) cDNA and chromosomal assignment of the gene". Gene. 204 (1–2): 115–20. doi:10.1016/S0378-1119(97)00530-1. PMID 9434172.

[pmid9151692-2] Nishiyama H, Itoh K, Kaneko Y, Kishishita M, Yoshida O, Fujita J (Jun 1997). "A Glycine-rich RNA-binding Protein Mediating Cold-inducible Suppression of Mammalian Cell Growth". J Cell Biol. 137 (4): 899–908. doi:10.1083/jcb.137.4.899. PMC 2139845. PMID 9151692.

[entrez-3] "Entrez Gene: CIRBP cold inducible RNA binding protein".

[1]

[2]

[3]

@@ Line 1: / Line 1: @@
-<!-- The PBB_Controls template provides controls for Protein Box Bot, please see Template:PBB_Controls for details. -->
+{{Infobox_gene}}
-{{PBB_Controls
+'''Cold-inducible RNA-binding protein''' is a [[protein]] that in humans is encoded by the ''CIRBP'' [[gene]].<ref name="pmid9434172">{{cite journal | vauthors = Nishiyama H, Higashitsuji H, Yokoi H, Itoh K, Danno S, Matsuda T, Fujita J | title = Cloning and characterization of human CIRP (cold-inducible RNA-binding protein) cDNA and chromosomal assignment of the gene | journal = Gene | volume = 204 | issue = 1–2 | pages = 115–20 |date=Feb 1998 | pmid = 9434172 | pmc =  | doi =10.1016/S0378-1119(97)00530-1  }}</ref><ref name="pmid9151692">{{cite journal | vauthors = Nishiyama H, Itoh K, Kaneko Y, Kishishita M, Yoshida O, Fujita J | title = A Glycine-rich RNA-binding Protein Mediating Cold-inducible Suppression of Mammalian Cell Growth | journal = J Cell Biol | volume = 137 | issue = 4 | pages = 899–908 |date=Jun 1997 | pmid = 9151692 | pmc = 2139845 | doi =10.1083/jcb.137.4.899  }}</ref><ref name="entrez">{{cite web | title = Entrez Gene: CIRBP cold inducible RNA binding protein| url = https://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=1153| accessdate = }}</ref> The cold inducible [[RNA-binding protein]] CIRBP plays a critical role in controlling the cellular response upon confronting a variety of cellular stresses, including short wavelength [[ultraviolet]] light, [[Hypoxia (medical)|hypoxia]], and [[hypothermia]].
-| update_page = yes
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-}}
-<!-- The GNF_Protein_box is automatically maintained by Protein Box Bot.  See Template:PBB_Controls to Stop updates. -->
-{{GNF_Protein_box
- | image = PBB_Protein_CIRBP_image.jpg
- | image_source = [[Protein_Data_Bank|PDB]] rendering based on 1x5s.
- | PDB = {{PDB2|1x5s}}
- | Name = Cold inducible RNA binding protein
- | HGNCid = 1982
- | Symbol = CIRBP
- | AltSymbols =; CIRP
- | OMIM = 602649
- | ECnumber =
- | Homologene = 980
- | MGIid = 893588
- | GeneAtlas_image1 = PBB_GE_CIRBP_200810_s_at_tn.png
-  | GeneAtlas_image2 = PBB_GE_CIRBP_200811_at_tn.png
-  | Function = {{GNF_GO|id=GO:0000166 |text = nucleotide binding}} {{GNF_GO|id=GO:0003676 |text = nucleic acid binding}} {{GNF_GO|id=GO:0003723 |text = RNA binding}}
- | Component = {{GNF_GO|id=GO:0005634 |text = nucleus}}
- | Process = {{GNF_GO|id=GO:0009409 |text = response to cold}}
- | Orthologs = {{GNF_Ortholog_box
-    | Hs_EntrezGene = 1153
-    | Hs_Ensembl = ENSG00000099622
-    | Hs_RefseqProtein = NP_001271
-    | Hs_RefseqmRNA = NM_001280
-    | Hs_GenLoc_db =
-    | Hs_GenLoc_chr = 19
-    | Hs_GenLoc_start = 1220336
-    | Hs_GenLoc_end = 1224169
-    | Hs_Uniprot = Q14011
-    | Mm_EntrezGene = 12696
-    | Mm_Ensembl = ENSMUSG00000045193
-    | Mm_RefseqmRNA = XM_986308
-    | Mm_RefseqProtein = XP_991402
-    | Mm_GenLoc_db =
-    | Mm_GenLoc_chr = 10
-    | Mm_GenLoc_start = 79572943
-    | Mm_GenLoc_end = 79573907
-    | Mm_Uniprot = P60824
-  }}
-}}
-'''Cold inducible RNA binding protein''', also known as '''CIRBP''', is a human [[gene]].<ref name="entrez">{{cite web | title = Entrez Gene: CIRBP cold inducible RNA binding protein| url = http://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=1153| accessdate = }}</ref>
 <!-- The PBB_Summary template is automatically maintained by Protein Box Bot.  See Template:PBB_Controls to Stop updates. -->
@@ Line 56: / Line 9: @@
 ==References==
-{{reflist|2}}
+{{reflist}}
+==External links==
+* {{UCSC gene info|CIRBP}}
 ==Further reading==
 {{refbegin | 2}}
 {{PBB_Further_reading
 | citations =
-*{{cite journal  | author=Nishiyama H, Itoh K, Kaneko Y, ''et al.'' |title=A glycine-rich RNA-binding protein mediating cold-inducible suppression of mammalian cell growth. |journal=J. Cell Biol. |volume=137 |issue= 4 |pages= 899-908 |year= 1997 |pmid= 9151692 |doi=  }}
+*{{cite journal  | author=Sheikh MS |title=Identification of several human homologs of hamster DNA damage-inducible transcripts. Cloning and characterization of a novel UV-inducible cDNA that codes for a putative RNA-binding protein |journal=J. Biol. Chem. |volume=272 |issue= 42 |pages= 26720–6 |year= 1997 |pmid= 9334257 |doi=10.1074/jbc.272.42.26720  |name-list-format=vanc| author2=Carrier F  | author3=Papathanasiou MA  | display-authors=3  | last4=Hollander  | first4=MC  | last5=Zhan  | first5=Q  | last6=Yu  | first6=K  | last7=Fornace Jr  | first7=AJ  }}
-*{{cite journal  | author=Sheikh MS, Carrier F, Papathanasiou MA, ''et al.'' |title=Identification of several human homologs of hamster DNA damage-inducible transcripts. Cloning and characterization of a novel UV-inducible cDNA that codes for a putative RNA-binding protein. |journal=J. Biol. Chem. |volume=272 |issue= 42 |pages= 26720-6 |year= 1997 |pmid= 9334257 |doi=  }}
+*{{cite journal  | author=Nishiyama H |title=Decreased expression of cold-inducible RNA-binding protein (CIRP) in male germ cells at elevated temperature |journal=Am. J. Pathol. |volume=152 |issue= 1 |pages= 289–96 |year= 1998 |pmid= 9422546 |doi=  | pmc=1858111  |name-list-format=vanc| author2=Danno S  | author3=Kaneko Y  | display-authors=3  | last4=Itoh  | first4=K  | last5=Yokoi  | first5=H  | last6=Fukumoto  | first6=M  | last7=Okuno  | first7=H  | last8=Millán  | first8=JL  | last9=Matsuda  | first9=T  }}
-*{{cite journal  | author=Nishiyama H, Danno S, Kaneko Y, ''et al.'' |title=Decreased expression of cold-inducible RNA-binding protein (CIRP) in male germ cells at elevated temperature. |journal=Am. J. Pathol. |volume=152 |issue= 1 |pages= 289-96 |year= 1998 |pmid= 9422546 |doi=  }}
+*{{cite journal  | vauthors=Lee J, Bedford MT |title=PABP1 identified as an arginine methyltransferase substrate using high-density protein arrays |journal=EMBO Rep. |volume=3 |issue= 3 |pages= 268–73 |year= 2002 |pmid= 11850402 |doi= 10.1093/embo-reports/kvf052  | pmc=1084016 }}
-*{{cite journal  | author=Nishiyama H, Higashitsuji H, Yokoi H, ''et al.'' |title=Cloning and characterization of human CIRP (cold-inducible RNA-binding protein) cDNA and chromosomal assignment of the gene. |journal=Gene |volume=204 |issue= 1-2 |pages= 115-20 |year= 1998 |pmid= 9434172 |doi=  }}
+*{{cite journal  | author=Strausberg RL |title=Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences |journal=Proc. Natl. Acad. Sci. U.S.A. |volume=99 |issue= 26 |pages= 16899–903 |year= 2003 |pmid= 12477932 |doi= 10.1073/pnas.242603899  | pmc=139241  |name-list-format=vanc| author2=Feingold EA  | author3=Grouse LH  | display-authors=3  | last4=Derge  | first4=JG  | last5=Klausner  | first5=RD  | last6=Collins  | first6=FS  | last7=Wagner  | first7=L  | last8=Shenmen  | first8=CM  | last9=Schuler  | first9=GD }}
-*{{cite journal  | author=Lee J, Bedford MT |title=PABP1 identified as an arginine methyltransferase substrate using high-density protein arrays. |journal=EMBO Rep. |volume=3 |issue= 3 |pages= 268-73 |year= 2002 |pmid= 11850402 |doi= 10.1093/embo-reports/kvf052 }}
+*{{cite journal  | author=Hamid AA |title=Expression of cold-inducible RNA-binding protein in the normal endometrium, endometrial hyperplasia, and endometrial carcinoma |journal=Int. J. Gynecol. Pathol. |volume=22 |issue= 3 |pages= 240–7 |year= 2004 |pmid= 12819390 |doi= 10.1097/01.PGP.0000070851.25718.EC  |name-list-format=vanc| author2=Mandai M  | author3=Fujita J  | display-authors=3  | last4=Nanbu  | first4=Kanako  | last5=Kariya  | first5=Masatoshi  | last6=Kusakari  | first6=Takashi  | last7=Fukuhara  | first7=Ken  | last8=Fujii  | first8=Shingo }}
-*{{cite journal  | author=Strausberg RL, Feingold EA, Grouse LH, ''et al.'' |title=Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. |journal=Proc. Natl. Acad. Sci. U.S.A. |volume=99 |issue= 26 |pages= 16899-903 |year= 2003 |pmid= 12477932 |doi= 10.1073/pnas.242603899 }}
+*{{cite journal  | author=Ota T |title=Complete sequencing and characterization of 21,243 full-length human cDNAs |journal=Nat. Genet. |volume=36 |issue= 1 |pages= 40–5 |year= 2004 |pmid= 14702039 |doi= 10.1038/ng1285  |name-list-format=vanc| author2=Suzuki Y  | author3=Nishikawa T  | display-authors=3  | last4=Otsuki  | first4=Tetsuji  | last5=Sugiyama  | first5=Tomoyasu  | last6=Irie  | first6=Ryotaro  | last7=Wakamatsu  | first7=Ai  | last8=Hayashi  | first8=Koji  | last9=Sato  | first9=Hiroyuki }}
-*{{cite journal  | author=Hamid AA, Mandai M, Fujita J, ''et al.'' |title=Expression of cold-inducible RNA-binding protein in the normal endometrium, endometrial hyperplasia, and endometrial carcinoma. |journal=Int. J. Gynecol. Pathol. |volume=22 |issue= 3 |pages= 240-7 |year= 2004 |pmid= 12819390 |doi= 10.1097/01.PGP.0000070851.25718.EC }}
+*{{cite journal  | author=Grimwood J |title=The DNA sequence and biology of human chromosome 19 |journal=Nature |volume=428 |issue= 6982 |pages= 529–35 |year= 2004 |pmid= 15057824 |doi= 10.1038/nature02399  |name-list-format=vanc| author2=Gordon LA  | author3=Olsen A  | display-authors=3  | last4=Terry  | first4=Astrid  | last5=Schmutz  | first5=Jeremy  | last6=Lamerdin  | first6=Jane  | last7=Hellsten  | first7=Uffe  | last8=Goodstein  | first8=David  | last9=Couronne  | first9=Olivier }}
-*{{cite journal  | author=Ota T, Suzuki Y, Nishikawa T, ''et al.'' |title=Complete sequencing and characterization of 21,243 full-length human cDNAs. |journal=Nat. Genet. |volume=36 |issue= 1 |pages= 40-5 |year= 2004 |pmid= 14702039 |doi= 10.1038/ng1285 }}
+*{{cite journal  | author=Wellmann S |title=Oxygen-regulated expression of the RNA-binding proteins RBM3 and CIRP by a HIF-1-independent mechanism |journal=J. Cell Sci. |volume=117 |issue= Pt 9 |pages= 1785–94 |year= 2004 |pmid= 15075239 |doi= 10.1242/jcs.01026  |name-list-format=vanc| author2=Bührer C  | author3=Moderegger E  | display-authors=3  | last4=Zelmer  | first4=A  | last5=Kirschner  | first5=R  | last6=Koehne  | first6=P  | last7=Fujita  | first7=J  | last8=Seeger  | first8=K }}
-*{{cite journal  | author=Grimwood J, Gordon LA, Olsen A, ''et al.'' |title=The DNA sequence and biology of human chromosome 19. |journal=Nature |volume=428 |issue= 6982 |pages= 529-35 |year= 2004 |pmid= 15057824 |doi= 10.1038/nature02399 }}
+*{{cite journal  | author=Gerhard DS |title=The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC) |journal=Genome Res. |volume=14 |issue= 10B |pages= 2121–7 |year= 2004 |pmid= 15489334 |doi= 10.1101/gr.2596504  | pmc=528928  |name-list-format=vanc| author2=Wagner L  | author3=Feingold EA  | display-authors=3  | last4=Shenmen  | first4=CM  | last5=Grouse  | first5=LH  | last6=Schuler  | first6=G  | last7=Klein  | first7=SL  | last8=Old  | first8=S  | last9=Rasooly  | first9=R }}
-*{{cite journal  | author=Wellmann S, Bührer C, Moderegger E, ''et al.'' |title=Oxygen-regulated expression of the RNA-binding proteins RBM3 and CIRP by a HIF-1-independent mechanism. |journal=J. Cell. Sci. |volume=117 |issue= Pt 9 |pages= 1785-94 |year= 2004 |pmid= 15075239 |doi= 10.1242/jcs.01026 }}
+*{{cite journal  | author=Rual JF |title=Towards a proteome-scale map of the human protein-protein interaction network |journal=Nature |volume=437 |issue= 7062 |pages= 1173–8 |year= 2005 |pmid= 16189514 |doi= 10.1038/nature04209  |name-list-format=vanc| author2=Venkatesan K  | author3=Hao T  | display-authors=3  | last4=Hirozane-Kishikawa  | first4=Tomoko  | last5=Dricot  | first5=Amélie  | last6=Li  | first6=Ning  | last7=Berriz  | first7=Gabriel F.  | last8=Gibbons  | first8=Francis D.  | last9=Dreze  | first9=Matija }}
-*{{cite journal  | author=Gerhard DS, Wagner L, Feingold EA, ''et al.'' |title=The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). |journal=Genome Res. |volume=14 |issue= 10B |pages= 2121-7 |year= 2004 |pmid= 15489334 |doi= 10.1101/gr.2596504 }}
+*{{cite journal  | author=Lim J |title=A protein-protein interaction network for human inherited ataxias and disorders of Purkinje cell degeneration |journal=Cell |volume=125 |issue= 4 |pages= 801–14 |year= 2006 |pmid= 16713569 |doi= 10.1016/j.cell.2006.03.032  |name-list-format=vanc| author2=Hao T  | author3=Shaw C  | display-authors=3  | last4=Patel  | first4=Akash J.  | last5=Szabó  | first5=Gábor  | last6=Rual  | first6=Jean-François  | last7=Fisk  | first7=C. Joseph  | last8=Li  | first8=Ning  | last9=Smolyar  | first9=Alex }}
-*{{cite journal  | author=Rual JF, Venkatesan K, Hao T, ''et al.'' |title=Towards a proteome-scale map of the human protein-protein interaction network. |journal=Nature |volume=437 |issue= 7062 |pages= 1173-8 |year= 2005 |pmid= 16189514 |doi= 10.1038/nature04209 }}
+*{{cite journal  | author=Ewing RM |title=Large-scale mapping of human protein–protein interactions by mass spectrometry |journal=Mol. Syst. Biol. |volume=3 |issue=  1|pages= 89 |year= 2007 |pmid= 17353931 |doi= 10.1038/msb4100134  | pmc=1847948  |name-list-format=vanc| author2=Chu P  | author3=Elisma F  | display-authors=3  | last4=Li  | first4=Hongyan  | last5=Taylor  | first5=Paul  | last6=Climie  | first6=Shane  | last7=McBroom-Cerajewski  | first7=Linda  | last8=Robinson  | first8=Mark D  | last9=O'Connor  | first9=Liam }}
-*{{cite journal  | author=Lim J, Hao T, Shaw C, ''et al.'' |title=A protein-protein interaction network for human inherited ataxias and disorders of Purkinje cell degeneration. |journal=Cell |volume=125 |issue= 4 |pages= 801-14 |year= 2006 |pmid= 16713569 |doi= 10.1016/j.cell.2006.03.032 }}
-*{{cite journal  | author=Ewing RM, Chu P, Elisma F, ''et al.'' |title=Large-scale mapping of human protein-protein interactions by mass spectrometry. |journal=Mol. Syst. Biol. |volume=3 |issue=  |pages= 89 |year= 2007 |pmid= 17353931 |doi= 10.1038/msb4100134 }}
 }}
 {{refend}}
+{{PDB Gallery|geneid=1153}}
+<!-- The PBB_Controls template provides controls for Protein Box Bot, please see Template:PBB_Controls for details. -->
+{{PBB_Controls
+| update_page = yes
+| require_manual_inspection = no
+| update_protein_box = yes
+| update_summary = yes
+| update_citations = yes
+}}
-{{protein-stub}}
+{{gene-19-stub}}
-{{WikiDoc Sources}}

CIRBP: Difference between revisions

Latest revision as of 19:34, 8 November 2017

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