RAB3D: Difference between revisions

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Revision as of 08:47, 10 September 2017

Ras-related protein Rab-3D is a protein that in humans is encoded by the RAB3D gene.^[1]^[2]^[3]

References

↑ Nishio H, Suda T, Sawada K, Miyamoto T, Koike T, Yamaguchi Y (Mar 1999). "Molecular cloning of cDNA encoding human Rab3D whose expression is upregulated with myeloid differentiation". Biochim Biophys Acta. 1444 (2): 283–90. doi:10.1016/s0167-4781(98)00279-6. PMID 10023084.
↑ Chen XN, Shi ZY, Korenberg JR, Sehgal A (Mar 1999). "Assignment of the GOV (Glioblastoma overexpressed) gene to human chromosome band 19p13.2 by fluorescence in situ hybridization". Cytogenet Cell Genet. 83 (3–4): 230–1. doi:10.1159/000015187. PMID 10072586.
↑ "Entrez Gene: RAB3D RAB3D, member RAS oncogene family".

Brondyk WH, McKiernan CJ, Fortner KA, et al. (1995). "Interaction cloning of Rabin3, a novel protein that associates with the Ras-like GTPase Rab3A". Mol. Cell. Biol. 15 (3): 1137–43. PMC 230335. PMID 7532276.
Sehgal A, Keener C, Boynton AL, et al. (1997). "Isolation and characterization of a novel gene from human glioblastoma multiforme tumor tissue". Int. J. Cancer. 71 (4): 565–72. doi:10.1002/(SICI)1097-0215(19970516)71:4<565::AID-IJC10>3.0.CO;2-B. PMID 9178809.
Raffaniello RD, Raufman JP (1999). "Cytosolic RAB3D is associated with RAB escort protein (REP), not RAB-GDP dissociation inhibitor (GDI), in dispersed chief cells from guinea pig stomach". J. Cell. Biochem. 72 (4): 540–8. doi:10.1002/(SICI)1097-4644(19990315)72:4<540::AID-JCB9>3.0.CO;2-D. PMID 10022613.
Cartel NJ, Wang J, Post M (2002). "Platelet-derived growth factor-BB-mediated glycosaminoglycan synthesis is transduced through Akt". Biochem. J. 363 (Pt 1): 19–28. doi:10.1042/0264-6021:3630019. PMC 1222446. PMID 11903042.
Riedel D, Antonin W, Fernandez-Chacon R, et al. (2002). "Rab3D Is Not Required for Exocrine Exocytosis but for Maintenance of Normally Sized Secretory Granules". Mol. Cell. Biol. 22 (18): 6487–97. doi:10.1128/MCB.22.18.6487-6497.2002. PMC 135623. PMID 12192047.
Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. doi:10.1073/pnas.242603899. PMC 139241. PMID 12477932.
Fukuda M (2003). "Distinct Rab binding specificity of Rim1, Rim2, rabphilin, and Noc2. Identification of a critical determinant of Rab3A/Rab27A recognition by Rim2". J. Biol. Chem. 278 (17): 15373–80. doi:10.1074/jbc.M212341200. PMID 12578829.
Nguyen D, Jones A, Ojakian GK, et al. (2003). "Rab3D redistribution and function in rat parotid acini". J. Cell. Physiol. 197 (3): 400–8. doi:10.1002/jcp.10373. PMID 14566969.
Matsumoto M, Miki T, Shibasaki T, et al. (2004). "Noc2 is essential in normal regulation of exocytosis in endocrine and exocrine cells". Proc. Natl. Acad. Sci. U.S.A. 101 (22): 8313–8. doi:10.1073/pnas.0306709101. PMC 420391. PMID 15159548.
Knop M, Aareskjold E, Bode G, Gerke V (2005). "Rab3D and annexin A2 play a role in regulated secretion of vWF, but not tPA, from endothelial cells". EMBO J. 23 (15): 2982–92. doi:10.1038/sj.emboj.7600319. PMC 514934. PMID 15257287.
Gerhard DS, Wagner L, Feingold EA, et al. (2004). "The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC)". Genome Res. 14 (10B): 2121–7. doi:10.1101/gr.2596504. PMC 528928. PMID 15489334.
Rual JF, Venkatesan K, Hao T, et al. (2005). "Towards a proteome-scale map of the human protein-protein interaction network". Nature. 437 (7062): 1173–8. doi:10.1038/nature04209. PMID 16189514.

This article on a gene on human chromosome 19 is a stub. You can help Wikipedia by expanding it.

[pmid10023084-1] Nishio H, Suda T, Sawada K, Miyamoto T, Koike T, Yamaguchi Y (Mar 1999). "Molecular cloning of cDNA encoding human Rab3D whose expression is upregulated with myeloid differentiation". Biochim Biophys Acta. 1444 (2): 283–90. doi:10.1016/s0167-4781(98)00279-6. PMID 10023084.

[pmid10072586-2] Chen XN, Shi ZY, Korenberg JR, Sehgal A (Mar 1999). "Assignment of the GOV (Glioblastoma overexpressed) gene to human chromosome band 19p13.2 by fluorescence in situ hybridization". Cytogenet Cell Genet. 83 (3–4): 230–1. doi:10.1159/000015187. PMID 10072586.

[entrez-3] "Entrez Gene: RAB3D RAB3D, member RAS oncogene family".

[1]

[2]

[3]

@@ Line 1: / Line 1: @@
-<!-- The PBB_Controls template provides controls for Protein Box Bot, please see Template:PBB_Controls for details. -->
+{{Infobox_gene}}
-{{PBB_Controls
+'''Ras-related protein Rab-3D''' is a [[protein]] that in humans is encoded by the ''RAB3D'' [[gene]].<ref name="pmid10023084">{{cite journal |vauthors=Nishio H, Suda T, Sawada K, Miyamoto T, Koike T, Yamaguchi Y | title = Molecular cloning of cDNA encoding human Rab3D whose expression is upregulated with myeloid differentiation | journal = Biochim Biophys Acta | volume = 1444 | issue = 2 | pages = 283–90 |date=Mar 1999 | pmid = 10023084 | pmc =  | doi =  10.1016/s0167-4781(98)00279-6}}</ref><ref name="pmid10072586">{{cite journal |vauthors=Chen XN, Shi ZY, Korenberg JR, Sehgal A | title = Assignment of the GOV (Glioblastoma overexpressed) gene to human chromosome band 19p13.2 by fluorescence in situ hybridization | journal = Cytogenet Cell Genet | volume = 83 | issue = 3–4 | pages = 230–1 |date=Mar 1999 | pmid = 10072586 | pmc =  | doi =10.1159/000015187  }}</ref><ref name="entrez">{{cite web | title = Entrez Gene: RAB3D RAB3D, member RAS oncogene family| url = https://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=9545| accessdate = }}</ref>
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-{{GNF_Protein_box
- | image = PBB_Protein_RAB3D_image.jpg
- | image_source = [[Protein_Data_Bank|PDB]] rendering based on 2gf9.
- | PDB = {{PDB2|2gf9}}
- | Name = RAB3D, member RAS oncogene family
- | HGNCid = 9779
- | Symbol = RAB3D
- | AltSymbols =; D2-2; GOV; RAB16; RAD3D
- | OMIM = 604350
- | ECnumber =
- | Homologene = 20902
- | MGIid = 97844
- | GeneAtlas_image1 = PBB_GE_RAB3D_208466_at_tn.png
-  | Function = {{GNF_GO|id=GO:0000166 |text = nucleotide binding}} {{GNF_GO|id=GO:0003924 |text = GTPase activity}} {{GNF_GO|id=GO:0005515 |text = protein binding}} {{GNF_GO|id=GO:0005525 |text = GTP binding}}
-  | Component = {{GNF_GO|id=GO:0016020 |text = membrane}} {{GNF_GO|id=GO:0042588 |text = zymogen granule}}
- | Process = {{GNF_GO|id=GO:0007264 |text = small GTPase mediated signal transduction}} {{GNF_GO|id=GO:0007516 |text = hemocyte development}} {{GNF_GO|id=GO:0015031 |text = protein transport}} {{GNF_GO|id=GO:0017157 |text = regulation of exocytosis}}
- | Orthologs = {{GNF_Ortholog_box
-    | Hs_EntrezGene = 9545
-    | Hs_Ensembl = ENSG00000105514
-    | Hs_RefseqProtein = NP_004274
-    | Hs_RefseqmRNA = NM_004283
-    | Hs_GenLoc_db =
-    | Hs_GenLoc_chr = 19
-    | Hs_GenLoc_start = 11296094
-    | Hs_GenLoc_end = 11311321
-    | Hs_Uniprot = O95716
-    | Mm_EntrezGene = 19340
-    | Mm_Ensembl = ENSMUSG00000019066
-    | Mm_RefseqmRNA = NM_031874
-    | Mm_RefseqProtein = NP_114080
-    | Mm_GenLoc_db =
-    | Mm_GenLoc_chr = 9
-    | Mm_GenLoc_start = 21657912
-    | Mm_GenLoc_end = 21668523
-    | Mm_Uniprot = Q543Q4
-  }}
-}}
-'''RAB3D, member RAS oncogene family''', also known as '''RAB3D''', is a human [[gene]].<ref name="entrez">{{cite web | title = Entrez Gene: RAB3D RAB3D, member RAS oncogene family| url = http://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=9545| accessdate = }}</ref>
 <!-- The PBB_Summary template is automatically maintained by Protein Box Bot.  See Template:PBB_Controls to Stop updates. -->
@@ Line 55: / Line 9: @@
 ==References==
-{{reflist|2}}
+{{reflist}}
 ==Further reading==
 {{refbegin | 2}}
 {{PBB_Further_reading
 | citations =
-*{{cite journal  | author=Brondyk WH, McKiernan CJ, Fortner KA, ''et al.'' |title=Interaction cloning of Rabin3, a novel protein that associates with the Ras-like GTPase Rab3A. |journal=Mol. Cell. Biol. |volume=15 |issue= 3 |pages= 1137-43 |year= 1995 |pmid= 7532276 |doi=  }}
+*{{cite journal  | author=Brondyk WH |title=Interaction cloning of Rabin3, a novel protein that associates with the Ras-like GTPase Rab3A |journal=Mol. Cell. Biol. |volume=15 |issue= 3 |pages= 1137–43 |year= 1995 |pmid= 7532276 |doi=  | pmc=230335  |name-list-format=vanc| author2=McKiernan CJ  | author3=Fortner KA  | display-authors=3  | last4=Stabila  | first4=P  | last5=Holz  | first5=RW  | last6=MacAra  | first6=IG  }}
-*{{cite journal  | author=Sehgal A, Keener C, Boynton AL, ''et al.'' |title=Isolation and characterization of a novel gene from human glioblastoma multiforme tumor tissue. |journal=Int. J. Cancer |volume=71 |issue= 4 |pages= 565-72 |year= 1997 |pmid= 9178809 |doi=  }}
+*{{cite journal  | author=Sehgal A |title=Isolation and characterization of a novel gene from human glioblastoma multiforme tumor tissue |journal=Int. J. Cancer |volume=71 |issue= 4 |pages= 565–72 |year= 1997 |pmid= 9178809 |doi=10.1002/(SICI)1097-0215(19970516)71:4<565::AID-IJC10>3.0.CO;2-B  |name-list-format=vanc| author2=Keener C  | author3=Boynton AL  | display-authors=3  | last4=Young  | first4=Ronald F.  | last5=Vermeulen  | first5=Sandra S.  | last6=Yonemura  | first6=Kenneth S.  | last7=Kohler  | first7=Erik P.  | last8=Aldape  | first8=Hector C.  | last9=Simrell  | first9=Charles R.  }}
-*{{cite journal  | author=Raffaniello RD, Raufman JP |title=Cytosolic RAB3D is associated with RAB escort protein (REP), not RAB-GDP dissociation inhibitor (GDI), in dispersed chief cells from guinea pig stomach. |journal=J. Cell. Biochem. |volume=72 |issue= 4 |pages= 540-8 |year= 1999 |pmid= 10022613 |doi=  }}
+*{{cite journal  |vauthors=Raffaniello RD, Raufman JP |title=Cytosolic RAB3D is associated with RAB escort protein (REP), not RAB-GDP dissociation inhibitor (GDI), in dispersed chief cells from guinea pig stomach |journal=J. Cell. Biochem. |volume=72 |issue= 4 |pages= 540–8 |year= 1999 |pmid= 10022613 |doi=10.1002/(SICI)1097-4644(19990315)72:4<540::AID-JCB9>3.0.CO;2-D  }}
-*{{cite journal  | author=Nishio H, Suda T, Sawada K, ''et al.'' |title=Molecular cloning of cDNA encoding human Rab3D whose expression is upregulated with myeloid differentiation. |journal=Biochim. Biophys. Acta |volume=1444 |issue= 2 |pages= 283-90 |year= 1999 |pmid= 10023084 |doi=  }}
+*{{cite journal  |vauthors=Cartel NJ, Wang J, Post M |title=Platelet-derived growth factor-BB-mediated glycosaminoglycan synthesis is transduced through Akt |journal=Biochem. J. |volume=363 |issue= Pt 1 |pages= 19–28 |year= 2002 |pmid= 11903042 |doi=10.1042/0264-6021:3630019  | pmc=1222446  }}
-*{{cite journal  | author=Chen XN, Shi ZY, Korenberg JR, Sehgal A |title=Assignment of the GOV (Glioblastoma overexpressed) gene to human chromosome band 19p13.2 by fluorescence in situ hybridization. |journal=Cytogenet. Cell Genet. |volume=83 |issue= 3-4 |pages= 230-1 |year= 1999 |pmid= 10072586 |doi=  }}
+*{{cite journal  | author=Riedel D |title=Rab3D Is Not Required for Exocrine Exocytosis but for Maintenance of Normally Sized Secretory Granules |journal=Mol. Cell. Biol. |volume=22 |issue= 18 |pages= 6487–97 |year= 2002 |pmid= 12192047 |doi=10.1128/MCB.22.18.6487-6497.2002  | pmc=135623  |name-list-format=vanc| author2=Antonin W  | author3=Fernandez-Chacon R  | display-authors=3  | last4=Alvarez De Toledo  | first4=G.  | last5=Jo  | first5=T.  | last6=Geppert  | first6=M.  | last7=Valentijn  | first7=J. A.  | last8=Valentijn  | first8=K.  | last9=Jamieson  | first9=J. D.  }}
-*{{cite journal  | author=Cartel NJ, Wang J, Post M |title=Platelet-derived growth factor-BB-mediated glycosaminoglycan synthesis is transduced through Akt. |journal=Biochem. J. |volume=363 |issue= Pt 1 |pages= 19-28 |year= 2002 |pmid= 11903042 |doi=  }}
+*{{cite journal  | author=Strausberg RL |title=Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences |journal=Proc. Natl. Acad. Sci. U.S.A. |volume=99 |issue= 26 |pages= 16899–903 |year= 2003 |pmid= 12477932 |doi= 10.1073/pnas.242603899  | pmc=139241  |name-list-format=vanc| author2=Feingold EA  | author3=Grouse LH  | display-authors=3  | last4=Derge  | first4=JG  | last5=Klausner  | first5=RD  | last6=Collins  | first6=FS  | last7=Wagner  | first7=L  | last8=Shenmen  | first8=CM  | last9=Schuler  | first9=GD }}
-*{{cite journal  | author=Riedel D, Antonin W, Fernandez-Chacon R, ''et al.'' |title=Rab3D is not required for exocrine exocytosis but for maintenance of normally sized secretory granules. |journal=Mol. Cell. Biol. |volume=22 |issue= 18 |pages= 6487-97 |year= 2002 |pmid= 12192047 |doi=  }}
+*{{cite journal  | author=Fukuda M |title=Distinct Rab binding specificity of Rim1, Rim2, rabphilin, and Noc2. Identification of a critical determinant of Rab3A/Rab27A recognition by Rim2 |journal=J. Biol. Chem. |volume=278 |issue= 17 |pages= 15373–80 |year= 2003 |pmid= 12578829 |doi= 10.1074/jbc.M212341200 }}
-*{{cite journal  | author=Strausberg RL, Feingold EA, Grouse LH, ''et al.'' |title=Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. |journal=Proc. Natl. Acad. Sci. U.S.A. |volume=99 |issue= 26 |pages= 16899-903 |year= 2003 |pmid= 12477932 |doi= 10.1073/pnas.242603899 }}
+*{{cite journal  | author=Nguyen D |title=Rab3D redistribution and function in rat parotid acini |journal=J. Cell. Physiol. |volume=197 |issue= 3 |pages= 400–8 |year= 2003 |pmid= 14566969 |doi= 10.1002/jcp.10373  |name-list-format=vanc| author2=Jones A  | author3=Ojakian GK  | display-authors=3  | last4=Raffaniello  | first4=Robert D. }}
-*{{cite journal  | author=Fukuda M |title=Distinct Rab binding specificity of Rim1, Rim2, rabphilin, and Noc2. Identification of a critical determinant of Rab3A/Rab27A recognition by Rim2. |journal=J. Biol. Chem. |volume=278 |issue= 17 |pages= 15373-80 |year= 2003 |pmid= 12578829 |doi= 10.1074/jbc.M212341200 }}
+*{{cite journal  | author=Matsumoto M |title=Noc2 is essential in normal regulation of exocytosis in endocrine and exocrine cells |journal=Proc. Natl. Acad. Sci. U.S.A. |volume=101 |issue= 22 |pages= 8313–8 |year= 2004 |pmid= 15159548 |doi= 10.1073/pnas.0306709101  | pmc=420391  |name-list-format=vanc| author2=Miki T  | author3=Shibasaki T  | display-authors=3  | last4=Kawaguchi  | first4=M  | last5=Shinozaki  | first5=H  | last6=Nio  | first6=J  | last7=Saraya  | first7=A  | last8=Koseki  | first8=H  | last9=Miyazaki  | first9=M }}
-*{{cite journal  | author=Nguyen D, Jones A, Ojakian GK, ''et al.'' |title=Rab3D redistribution and function in rat parotid acini. |journal=J. Cell. Physiol. |volume=197 |issue= 3 |pages= 400-8 |year= 2003 |pmid= 14566969 |doi= 10.1002/jcp.10373 }}
+*{{cite journal  |vauthors=Knop M, Aareskjold E, Bode G, Gerke V |title=Rab3D and annexin A2 play a role in regulated secretion of vWF, but not tPA, from endothelial cells |journal=EMBO J. |volume=23 |issue= 15 |pages= 2982–92 |year= 2005 |pmid= 15257287 |doi= 10.1038/sj.emboj.7600319  | pmc=514934 }}
-*{{cite journal  | author=Matsumoto M, Miki T, Shibasaki T, ''et al.'' |title=Noc2 is essential in normal regulation of exocytosis in endocrine and exocrine cells. |journal=Proc. Natl. Acad. Sci. U.S.A. |volume=101 |issue= 22 |pages= 8313-8 |year= 2004 |pmid= 15159548 |doi= 10.1073/pnas.0306709101 }}
+*{{cite journal  | author=Gerhard DS |title=The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC) |journal=Genome Res. |volume=14 |issue= 10B |pages= 2121–7 |year= 2004 |pmid= 15489334 |doi= 10.1101/gr.2596504  | pmc=528928  |name-list-format=vanc| author2=Wagner L  | author3=Feingold EA  | display-authors=3  | last4=Shenmen  | first4=CM  | last5=Grouse  | first5=LH  | last6=Schuler  | first6=G  | last7=Klein  | first7=SL  | last8=Old  | first8=S  | last9=Rasooly  | first9=R }}
-*{{cite journal  | author=Knop M, Aareskjold E, Bode G, Gerke V |title=Rab3D and annexin A2 play a role in regulated secretion of vWF, but not tPA, from endothelial cells. |journal=EMBO J. |volume=23 |issue= 15 |pages= 2982-92 |year= 2005 |pmid= 15257287 |doi= 10.1038/sj.emboj.7600319 }}
+*{{cite journal  | author=Rual JF |title=Towards a proteome-scale map of the human protein-protein interaction network |journal=Nature |volume=437 |issue= 7062 |pages= 1173–8 |year= 2005 |pmid= 16189514 |doi= 10.1038/nature04209  |name-list-format=vanc| author2=Venkatesan K  | author3=Hao T  | display-authors=3  | last4=Hirozane-Kishikawa  | first4=Tomoko  | last5=Dricot  | first5=Amélie  | last6=Li  | first6=Ning  | last7=Berriz  | first7=Gabriel F.  | last8=Gibbons  | first8=Francis D.  | last9=Dreze  | first9=Matija }}
-*{{cite journal  | author=Gerhard DS, Wagner L, Feingold EA, ''et al.'' |title=The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). |journal=Genome Res. |volume=14 |issue= 10B |pages= 2121-7 |year= 2004 |pmid= 15489334 |doi= 10.1101/gr.2596504 }}
-*{{cite journal  | author=Rual JF, Venkatesan K, Hao T, ''et al.'' |title=Towards a proteome-scale map of the human protein-protein interaction network. |journal=Nature |volume=437 |issue= 7062 |pages= 1173-8 |year= 2005 |pmid= 16189514 |doi= 10.1038/nature04209 }}
 }}
 {{refend}}
+{{PDB Gallery|geneid=9545}}
+<!-- The PBB_Controls template provides controls for Protein Box Bot, please see Template:PBB_Controls for details. -->
+{{PBB_Controls
+| update_page = yes
+| require_manual_inspection = no
+| update_protein_box = yes
+| update_summary = yes
+| update_citations = yes
+}}
-{{protein-stub}}
+{{gene-19-stub}}
-{{WikiDoc Sources}}

RAB3D: Difference between revisions

Revision as of 08:47, 10 September 2017

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