SS18L1: Difference between revisions

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{{Infobox_gene}}
{{PBB_Controls
'''SS18-like protein 1''' is a [[protein]] that in humans is encoded by the ''SS18L1'' [[gene]].<ref name="entrez">{{cite web | title = Entrez Gene: SS18L1 synovial sarcoma translocation gene on chromosome 18-like 1| url = https://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=26039| accessdate = }}</ref>
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| update_protein_box = yes
| update_summary = yes
| update_citations = yes
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<!-- The GNF_Protein_box is automatically maintained by Protein Box Bot.  See Template:PBB_Controls to Stop updates. -->
== Function ==
{{GNF_Protein_box
| image =
| image_source =
| PDB =
| Name = Synovial sarcoma translocation gene on chromosome 18-like 1
| HGNCid = 15592
| Symbol = SS18L1
| AltSymbols =; CREST; KIAA0693; LP2261; MGC26711; MGC78386
| OMIM = 606472
| ECnumber = 
| Homologene = 9191
| MGIid = 2444061
| GeneAtlas_image1 = PBB_GE_SS18L1_213140_s_at_tn.png
| Function = {{GNF_GO|id=GO:0005515 |text = protein binding}}
| Component =
| Process =
| Orthologs = {{GNF_Ortholog_box
    | Hs_EntrezGene = 26039
    | Hs_Ensembl = ENSG00000184402
    | Hs_RefseqProtein = NP_056373
    | Hs_RefseqmRNA = NM_015558
    | Hs_GenLoc_db = 
    | Hs_GenLoc_chr = 20
    | Hs_GenLoc_start = 60152217
    | Hs_GenLoc_end = 60190958
    | Hs_Uniprot = O75177
    | Mm_EntrezGene = 269397
    | Mm_Ensembl = ENSMUSG00000039086
    | Mm_RefseqmRNA = NM_178750
    | Mm_RefseqProtein = NP_848865
    | Mm_GenLoc_db = 
    | Mm_GenLoc_chr = 2
    | Mm_GenLoc_start = 179971917
    | Mm_GenLoc_end = 179999609
    | Mm_Uniprot = 
  }}
}}
'''Synovial sarcoma translocation gene on chromosome 18-like 1''', also known as '''SS18L1''', is a human [[gene]].<ref name="entrez">{{cite web | title = Entrez Gene: SS18L1 synovial sarcoma translocation gene on chromosome 18-like 1| url = http://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=26039| accessdate = }}</ref>


<!-- The PBB_Summary template is automatically maintained by Protein Box Bot.  See Template:PBB_Controls to Stop updates. -->
[[Synovial sarcoma]]s occur most frequently in the extremities around large joints. More than 90% of cases have a recurrent and specific chromosomal translocation, t(X;18)(p11.2;q11.2), in which the 5-prime end of the [[SS18]] gene is fused in-frame to the 3-prime end of the [[SSX1]], [[SSX2]], or [[SSX4 (gene)|SSX4]] gene. The SS18L1 gene is homologous to SS18.<ref name="entrez"/>
{{PBB_Summary
 
| section_title =
== Interactions ==
| summary_text = Synovial sarcomas occur most frequently in the extremities around large joints. More than 90% of cases have a recurrent and specific chromosomal translocation, t(X;18)(p11.2;q11.2), in which the 5-prime end of the SS18 gene (MIM 600192) is fused in-frame to the 3-prime end of the SSX1 (MIM 312820), SSX2 (MIM 300192), or SSX4 (MIM 300326) gene. The SS18L1 gene is homologous to SS18.[supplied by OMIM]<ref name="entrez">{{cite web | title = Entrez Gene: SS18L1 synovial sarcoma translocation gene on chromosome 18-like 1| url = http://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=26039| accessdate = }}</ref>
 
}}
SS18L1 has been shown to [[Protein-protein interaction|interact]] with [[CREB-binding protein]].<ref name=pmid14716005>{{cite journal | vauthors = Aizawa H, Hu SC, Bobb K, Balakrishnan K, Ince G, Gurevich I, Cowan M, Ghosh A | title = Dendrite development regulated by CREST, a calcium-regulated transcriptional activator | journal = [[Science (journal)|Science]] | volume = 303 | issue = 5655 | pages = 197–202 | date = Jan 2004 | pmid = 14716005 | doi = 10.1126/science.1089845 | url = | authorlink =  | laysummary =  | oclc =  | id =  | bibcode =  | location = United States | laydate =  | quote =  | publisher =  | issn =  | laysource =  }}</ref> Biochemical pull down assays reveal SS18L1 to interact with several components of the human SWI/SNF chromatin remodeling complex.<ref>{{cite journal | vauthors = Middeljans E, Wan X, Jansen PW, Sharma V, Stunnenberg HG, Logie C | title = SS18 together with animal-specific factors defines human BAF-type SWI/SNF complexes. | journal = PLoS ONE | volume = 7 | issue = 3 | pages = e33834 | year = 2012 | pmid = 22442726 | pmc = 3307773 | doi = 10.1371/journal.pone.0033834 }}</ref>


==References==
==References==
{{reflist|2}}
{{reflist}}
 
==Further reading==
==Further reading==
{{refbegin | 2}}
{{refbegin | 2}}
{{PBB_Further_reading
*{{cite journal | vauthors = Ishikawa K, Nagase T, Suyama M, Miyajima N, Tanaka A, Kotani H, Nomura N, Ohara O | title = Prediction of the coding sequences of unidentified human genes. X. The complete sequences of 100 new cDNA clones from brain which can code for large proteins in vitro. | journal = DNA Res. | volume = 5 | issue = 3 | pages = 169–76 | year = 1998 | pmid = 9734811 | doi = 10.1093/dnares/5.3.169 }}
| citations =
*{{cite journal | vauthors = de Bruijn DR, Kater-Baats E, Eleveld M, Merkx G, Geurts Van Kessel A | title = Mapping and characterization of the mouse and human SS18 genes, two human SS18-like genes and a mouse Ss18 pseudogene. | journal = Cytogenet. Cell Genet. | volume = 92 | issue = 3-4 | pages = 310–9 | year = 2001 | pmid = 11435705 | doi = 10.1159/000056920 }}
*{{cite journal | author=Ishikawa K, Nagase T, Suyama M, ''et al.'' |title=Prediction of the coding sequences of unidentified human genes. X. The complete sequences of 100 new cDNA clones from brain which can code for large proteins in vitro. |journal=DNA Res. |volume=5 |issue= 3 |pages= 169-76 |year= 1998 |pmid= 9734811 |doi= }}
*{{cite journal | vauthors = Storlazzi CT, Mertens F, Mandahl N, Gisselsson D, Isaksson M, Gustafson P, Domanski HA, Panagopoulos I | title = A novel fusion gene, SS18L1/SSX1, in synovial sarcoma. | journal = Genes Chromosomes Cancer | volume = 37 | issue = 2 | pages = 195–200 | year = 2003 | pmid = 12696068 | doi = 10.1002/gcc.10210 }}
*{{cite journal | author=de Bruijn DR, Kater-Baats E, Eleveld M, ''et al.'' |title=Mapping and characterization of the mouse and human SS18 genes, two human SS18-like genes and a mouse Ss18 pseudogene. |journal=Cytogenet. Cell Genet. |volume=92 |issue= 3-4 |pages= 310-9 |year= 2001 |pmid= 11435705 |doi=  }}
*{{cite journal | vauthors = Aizawa H, Hu SC, Bobb K, Balakrishnan K, Ince G, Gurevich I, Cowan M, Ghosh A | title = Dendrite development regulated by CREST, a calcium-regulated transcriptional activator. | journal = Science | volume = 303 | issue = 5655 | pages = 197–202 | year = 2004 | pmid = 14716005 | doi = 10.1126/science.1089845 }}
*{{cite journal  | author=Deloukas P, Matthews LH, Ashurst J, ''et al.'' |title=The DNA sequence and comparative analysis of human chromosome 20. |journal=Nature |volume=414 |issue= 6866 |pages= 865-71 |year= 2002 |pmid= 11780052 |doi= 10.1038/414865a }}
*{{cite journal | vauthors = Pradhan A, Liu Y | title = A multifunctional domain of the calcium-responsive transactivator (CREST) that inhibits dendritic growth in cultured neurons. | journal = J. Biol. Chem. | volume = 280 | issue = 26 | pages = 24738–43 | year = 2005 | pmid = 15866867 | doi = 10.1074/jbc.M504018200 }}
*{{cite journal  | author=Strausberg RL, Feingold EA, Grouse LH, ''et al.'' |title=Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. |journal=Proc. Natl. Acad. Sci. U.S.A. |volume=99 |issue= 26 |pages= 16899-903 |year= 2003 |pmid= 12477932 |doi= 10.1073/pnas.242603899 }}
*{{cite journal | vauthors = Rual JF, Venkatesan K, Hao T, Hirozane-Kishikawa T, Dricot A, Li N, Berriz GF, Gibbons FD, Dreze M, Ayivi-Guedehoussou N, Klitgord N, Simon C, Boxem M, Milstein S, Rosenberg J, Goldberg DS, Zhang LV, Wong SL, Franklin G, Li S, Albala JS, Lim J, Fraughton C, Llamosas E, Cevik S, Bex C, Lamesch P, Sikorski RS, Vandenhaute J, Zoghbi HY, Smolyar A, Bosak S, Sequerra R, Doucette-Stamm L, Cusick ME, Hill DE, Roth FP, Vidal M | title = Towards a proteome-scale map of the human protein-protein interaction network. | journal = Nature | volume = 437 | issue = 7062 | pages = 1173–8 | year = 2005 | pmid = 16189514 | doi = 10.1038/nature04209 }}
*{{cite journal | author=Storlazzi CT, Mertens F, Mandahl N, ''et al.'' |title=A novel fusion gene, SS18L1/SSX1, in synovial sarcoma. |journal=Genes Chromosomes Cancer |volume=37 |issue= 2 |pages= 195-200 |year= 2003 |pmid= 12696068 |doi= 10.1002/gcc.10210 }}
*{{cite journal | vauthors = de Bruijn DR, Geurts van Kessel A | title = Common origin of the human synovial sarcoma associated SS18 and SS18L1 gene loci. | journal = Cytogenet. Genome Res. | volume = 112 | issue = 3-4 | pages = 222–6 | year = 2006 | pmid = 16484776 | doi = 10.1159/000089874 }}
*{{cite journal | author=Aizawa H, Hu SC, Bobb K, ''et al.'' |title=Dendrite development regulated by CREST, a calcium-regulated transcriptional activator. |journal=Science |volume=303 |issue= 5655 |pages= 197-202 |year= 2004 |pmid= 14716005 |doi= 10.1126/science.1089845 }}
*{{cite journal | author=Gerhard DS, Wagner L, Feingold EA, ''et al.'' |title=The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). |journal=Genome Res. |volume=14 |issue= 10B |pages= 2121-7 |year= 2004 |pmid= 15489334 |doi= 10.1101/gr.2596504 }}
*{{cite journal  | author=Pradhan A, Liu Y |title=A multifunctional domain of the calcium-responsive transactivator (CREST) that inhibits dendritic growth in cultured neurons. |journal=J. Biol. Chem. |volume=280 |issue= 26 |pages= 24738-43 |year= 2005 |pmid= 15866867 |doi= 10.1074/jbc.M504018200 }}
*{{cite journal | author=Rual JF, Venkatesan K, Hao T, ''et al.'' |title=Towards a proteome-scale map of the human protein-protein interaction network. |journal=Nature |volume=437 |issue= 7062 |pages= 1173-8 |year= 2005 |pmid= 16189514 |doi= 10.1038/nature04209 }}
*{{cite journal | author=de Bruijn DR, Geurts van Kessel A |title=Common origin of the human synovial sarcoma associated SS18 and SS18L1 gene loci. |journal=Cytogenet. Genome Res. |volume=112 |issue= 3-4 |pages= 222-6 |year= 2006 |pmid= 16484776 |doi= 10.1159/000089874 }}
}}
{{refend}}
{{refend}}


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Revision as of 03:55, 27 October 2017

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Identifiers
Aliases
External IDsGeneCards: [1]
Orthologs
SpeciesHumanMouse
Entrez

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Ensembl

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UniProt

n/a

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RefSeq (mRNA)

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RefSeq (protein)

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Location (UCSC)n/an/a
PubMed searchn/an/a
Wikidata
View/Edit Human

SS18-like protein 1 is a protein that in humans is encoded by the SS18L1 gene.[1]

Function

Synovial sarcomas occur most frequently in the extremities around large joints. More than 90% of cases have a recurrent and specific chromosomal translocation, t(X;18)(p11.2;q11.2), in which the 5-prime end of the SS18 gene is fused in-frame to the 3-prime end of the SSX1, SSX2, or SSX4 gene. The SS18L1 gene is homologous to SS18.[1]

Interactions

SS18L1 has been shown to interact with CREB-binding protein.[2] Biochemical pull down assays reveal SS18L1 to interact with several components of the human SWI/SNF chromatin remodeling complex.[3]

References

  1. ↑ 1.0 1.1 "Entrez Gene: SS18L1 synovial sarcoma translocation gene on chromosome 18-like 1".
  2. ↑ Aizawa H, Hu SC, Bobb K, Balakrishnan K, Ince G, Gurevich I, Cowan M, Ghosh A (Jan 2004). "Dendrite development regulated by CREST, a calcium-regulated transcriptional activator". Science. United States. 303 (5655): 197–202. doi:10.1126/science.1089845. PMID 14716005.
  3. ↑ Middeljans E, Wan X, Jansen PW, Sharma V, Stunnenberg HG, Logie C (2012). "SS18 together with animal-specific factors defines human BAF-type SWI/SNF complexes". PLoS ONE. 7 (3): e33834. doi:10.1371/journal.pone.0033834. PMC 3307773. PMID 22442726.

Further reading

  • Ishikawa K, Nagase T, Suyama M, Miyajima N, Tanaka A, Kotani H, Nomura N, Ohara O (1998). "Prediction of the coding sequences of unidentified human genes. X. The complete sequences of 100 new cDNA clones from brain which can code for large proteins in vitro". DNA Res. 5 (3): 169–76. doi:10.1093/dnares/5.3.169. PMID 9734811.
  • de Bruijn DR, Kater-Baats E, Eleveld M, Merkx G, Geurts Van Kessel A (2001). "Mapping and characterization of the mouse and human SS18 genes, two human SS18-like genes and a mouse Ss18 pseudogene". Cytogenet. Cell Genet. 92 (3–4): 310–9. doi:10.1159/000056920. PMID 11435705.
  • Storlazzi CT, Mertens F, Mandahl N, Gisselsson D, Isaksson M, Gustafson P, Domanski HA, Panagopoulos I (2003). "A novel fusion gene, SS18L1/SSX1, in synovial sarcoma". Genes Chromosomes Cancer. 37 (2): 195–200. doi:10.1002/gcc.10210. PMID 12696068.
  • Aizawa H, Hu SC, Bobb K, Balakrishnan K, Ince G, Gurevich I, Cowan M, Ghosh A (2004). "Dendrite development regulated by CREST, a calcium-regulated transcriptional activator". Science. 303 (5655): 197–202. doi:10.1126/science.1089845. PMID 14716005.
  • Pradhan A, Liu Y (2005). "A multifunctional domain of the calcium-responsive transactivator (CREST) that inhibits dendritic growth in cultured neurons". J. Biol. Chem. 280 (26): 24738–43. doi:10.1074/jbc.M504018200. PMID 15866867.
  • Rual JF, Venkatesan K, Hao T, Hirozane-Kishikawa T, Dricot A, Li N, Berriz GF, Gibbons FD, Dreze M, Ayivi-Guedehoussou N, Klitgord N, Simon C, Boxem M, Milstein S, Rosenberg J, Goldberg DS, Zhang LV, Wong SL, Franklin G, Li S, Albala JS, Lim J, Fraughton C, Llamosas E, Cevik S, Bex C, Lamesch P, Sikorski RS, Vandenhaute J, Zoghbi HY, Smolyar A, Bosak S, Sequerra R, Doucette-Stamm L, Cusick ME, Hill DE, Roth FP, Vidal M (2005). "Towards a proteome-scale map of the human protein-protein interaction network". Nature. 437 (7062): 1173–8. doi:10.1038/nature04209. PMID 16189514.
  • de Bruijn DR, Geurts van Kessel A (2006). "Common origin of the human synovial sarcoma associated SS18 and SS18L1 gene loci". Cytogenet. Genome Res. 112 (3–4): 222–6. doi:10.1159/000089874. PMID 16484776.


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