Non-degenerate nucleotides per response element: Difference between revisions

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Marshallsumter (talk | contribs)
smweditor
13,503 edits
Line 5: Line 5:
! Number of nucleotides !! Letters of nucleotides !! Number of response elements !! Average ± deviation !! Order of list !! Present or Absent  
! Number of nucleotides !! Letters of nucleotides !! Number of response elements !! Average ± deviation !! Order of list !! Present or Absent  
|-
|-
| 1 || A || 295 || 295.0 ± 0.0 || 1 || Present  
| 1(1) || A || 295 || 295.0 ± 0.0 || 1 || Present  
|-
|-
| 1 || T || 285 || - || 1 || Present  
| 1(2) || T || 285 || - || 1 || Present  
|-
|-
| 1 || G || 286 || - || 3 || Present  
| 1(3) || G || 286 || - || 3 || Present  
|-
|-
| 1(4) || C || 300 || 291.5 ± 6 || 5, 134 || Absent, Present  
| 1(4) || C || 300 || 291.5 ± 6 || 5, 134 || Absent, Present  
|-
|-
| 2 || AA || 105 || 105 ± 0.0 || 1 || Present  
| 2(1) || AA || 105 || 105 ± 0.0 || 1 || Present  
|-
|-
| 2 || AT || 105 || 105 ± 0.0 || 1 || Present  
| 2(2) || AT || 105 || 105 ± 0.0 || 1 || Present  
|-
|-
| 2 || TA || 74 || - || 1 || Present  
| 2(3) || TA || 74 || - || 1 || Present  
|-
|-
| 2 || AC || 103 || - || 5 || Absent  
| 2(4) || AC || 103 || - || 5 || Absent  
|-
|-
| 2 || CG || 102 || - || 5 || Absent  
| 2(5) || CG || 102 || - || 5 || Absent  
|-
|-
| 2 || CA || 136 || - || 7 || Present  
| 2(6) || CA || 136 || - || 7 || Present  
|-
|-
| 2 || TG || 112 || - || 7 || Present  
| 2(7) || TG || 112 || - || 7 || Present  
|-
|-
| 2 || AG || 63 || - || 8 || Present  
| 2(8) || AG || 63 || - || 8 || Present  
|-
|-
| 2 || CC || 101 || - || 8 || Present  
| 2(9) || CC || 101 || - || 8 || Present  
|-
|-
| 2 || GC || 74 || - || 8 || Present  
| 2(10) || GC || 74 || - || 8 || Present  
|-
|-
| 2 || CT || 67 || - || 11 || Absent  
| 2(11) || CT || 67 || - || 11 || Absent  
|-
|-
| 2 || GG || 92 || - || 12 || Absent  
| 2(12) || GG || 92 || - || 12 || Absent  
|-
|-
| 2 || GT || 106 || - || 12 || Absent  
| 2(13) || GT || 106 || - || 12 || Absent  
|-
|-
| 2 || TT || 91 || - || 12 || Absent  
| 2(14) || TT || 91 || - || 12 || Absent  
|-
|-
| 2 || TC || 122 || - || 14 || Absent  
| 2(15) || TC || 122 || - || 14 || Absent  
|-
|-
| 2(16,16) || GA || 106 || 97.4 ± 15.5 || 16 || Absent  
| 2(16,16) || GA || 106 || 97.4 ± 15.5 || 16 || Absent  
Line 175: Line 175:
| 4(1) || AAAA || 6 || 6.0 ± 0.0 || 1 || Present  
| 4(1) || AAAA || 6 || 6.0 ± 0.0 || 1 || Present  
|-
|-
| 4 || TAAA || 6 || 6.0 ± 0.0 || 1 || Present  
| 4(2) || TAAA || 6 || 6.0 ± 0.0 || 1 || Present  
|-
|-
| 4 || ATAA || 10 || 7.33 ± 1.78 || 1 || Present  
| 4(3) || ATAA || 10 || 7.33 ± 1.78 || 1 || Present  
|-
|-
| 4 || TATA || 8 || 7.5 ± 1.5 || 1 || Present  
| 4(4) || TATA || 8 || 7.5 ± 1.5 || 1 || Present  
|-
|-
| 4 || AACG || 4 || 6.8 ± 1.76 || 5 || Absent  
| 4(5) || AACG || 4 || 6.8 ± 1.76 || 5 || Absent  
|-
|-
| 4 || AGCC || 2 || 6.0 ± 2.00 || 8 || Present  
| 4(6) || AGCC || 2 || 6.0 ± 2.00 || 8 || Present  
|-
|-
| 4 || GCCG || 4 || - || 8 || Present  
| 4(7) || GCCG || 4 || - || 8 || Present  
|-
|-
| 4 || CCGC || 10 || - || 8 || Present  
| 4(8) || CCGC || 10 || - || 8 || Present  
|-
|-
| 4 || CGCC || 11 || - || 8 || Present  
| 4(9) || CGCC || 11 || - || 8 || Present  
|-
|-
| 4 || CTAA || 5 || - || 11 || Absent  
| 4(10) || CTAA || 5 || - || 11 || Absent  
|-
|-
| 4 || AACC || 4 || - || 11 || Absent  
| 4(11) || AACC || 4 || - || 11 || Absent  
|-
|-
| 4 || TAAC || 6 || - || 11 || Absent  
| 4(12) || TAAC || 6 || - || 11 || Absent  
|-
|-
| 4 || GCAA || 2 || - || 12 || Absent  
| 4(13) || GCAA || 2 || - || 12 || Absent  
|-
|-
| 4 || GTTG || 3 || - || 12 || Absent  
| 4(14) || GTTG || 3 || - || 12 || Absent  
|-
|-
| 4 || TTGG || 4 || - || 12 || Absent  
| 4(15) || TTGG || 4 || - || 12 || Absent  
|-
|-
| 4 || TGGC || 6 || - || 12 || Absent  
| 4(16) || TGGC || 6 || - || 12 || Absent  
|-
|-
| 4 || GGCA || 3 || - || 12 || Absent  
| 4(17) || GGCA || 3 || - || 12 || Absent  
|-
|-
| 4 || GCAT || 5 || - || 12 || Absent  
| 4(18) || GCAT || 5 || - || 12 || Absent  
|-
|-
| 4 || CATG || 7 || - || 12 || Absent  
| 4(19) || CATG || 7 || - || 12 || Absent  
|-
|-
| 4 || ATGG || 4 || - || 12 || Absent  
| 4(20) || ATGG || 4 || - || 12 || Absent  
|-
|-
| 4 || CAAC || 3 || - || 12 || Absent  
| 4(21) || CAAC || 3 || - || 12 || Absent  
|-
|-
| 4 || CCAA || 10 || - || 14 || Absent  
| 4(22) || CCAA || 10 || - || 14 || Absent  
|-
|-
| 4 || CCTT || 2 || - || 15 || Absent  
| 4(23) || CCTT || 2 || - || 15 || Absent  
|-
|-
| 4 || TTAC || 4 || - || 15 || Absent  
| 4(24) || TTAC || 4 || - || 15 || Absent  
|-
|-
| 4 || ACCC || 7 || - || 15 || Absent  
| 4(25) || ACCC || 7 || - || 15 || Absent  
|-
|-
| 4 || CCCC || 9 || - || 15 || Absent  
| 4(26) || CCCC || 9 || - || 15 || Absent  
|-
|-
| 4 || CCCT || 10 || - || 15 || Absent  
| 4(27) || CCCT || 10 || - || 15 || Absent  
|-
|-
| 4 || TGGA || 1 || - || 16 || Absent  
| 4(28) || TGGA || 1 || - || 16 || Absent  
|-
|-
| 4 || AAGC || 1 || - || 16 || Absent  
| 4(29) || AAGC || 1 || - || 16 || Absent  
|-
|-
| 4 || TTTC || 9 || - || 16 || Absent  
| 4(30) || TTTC || 9 || - || 16 || Absent  
|-
|-
| 4 || TTCG || 4 || - || 16 || Absent  
| 4(31) || TTCG || 4 || - || 16 || Absent  
|-
|-
| 4 || TCGT || 3 || - || 16 || Absent  
| 4(32) || TCGT || 3 || - || 16 || Absent  
|-
|-
| 4 || CGTT || 3 || - || 16 || Absent  
| 4(33) || CGTT || 3 || - || 16 || Absent  
|-
|-
| 4 || GTTG || 3 || - || 16 || Absent  
| 4(34) || GTTG || 3 || - || 16 || Absent  
|-
|-
| 4 || GGAA || 4 || - || 16 || Absent  
| 4(35) || GGAA || 4 || - || 16 || Absent  
|-
|-
| 4 || GAAG || 2 || - || 16 || Absent  
| 4(36) || GAAG || 2 || - || 16 || Absent  
|-
|-
| 4 || AGCG || 2 || - || 16 || Absent  
| 4(37) || AGCG || 2 || - || 16 || Absent  
|-
|-
| 4 || GCGG || 9 || - || 16 || Absent  
| 4(38) || GCGG || 9 || - || 16 || Absent  
|-
|-
| 4 || CGGG || 4 || - || 16 || Absent  
| 4(39) || CGGG || 4 || - || 16 || Absent  
|-
|-
| 4 || GGGA || 2 || - || 16 || Absent  
| 4(40) || GGGA || 2 || - || 16 || Absent  
|-
|-
| 4 || CCAC || 12 || - || 18 & 19 || Absent  
| 4(41) || CCAC || 12 || - || 18 & 19 || Absent  
|-
|-
| 4 || TCCA || 9 || - || 18 & 19 || Absent  
| 4(42) || TCCA || 9 || - || 18 & 19 || Absent  
|-
|-
| 4 || ATCC || 6 || - || 18 & 19 || Absent  
| 4(43) || ATCC || 6 || - || 18 & 19 || Absent  
|-
|-
| 4 || TATC || 6 || - || 18 & 19 || Absent  
| 4(44) || TATC || 6 || - || 18 & 19 || Absent  
|-
|-
| 4 || ACCG || 5 || - || 21 || Absent  
| 4(45) || ACCG || 5 || - || 21 || Absent  
|-
|-
| 4 || CCGA || 3 || - || 21 || Absent  
| 4(46) || CCGA || 3 || - || 21 || Absent  
|-
|-
| 4 || CGAC || 4 || - || 21 || Absent  
| 4(47) || CGAC || 4 || - || 21 || Absent  
|-
|-
| 4 || GACA || 4 || - || 21 || Absent  
| 4(48) || GACA || 4 || - || 21 || Absent  
|-
|-
| 4 || ACAT || 4 || - || 21 || Absent  
| 4(49) || ACAT || 4 || - || 21 || Absent  
|-
|-
| 4 || AGTG || 4 || - || 22 || Absent  
| 4(50) || AGTG || 4 || - || 22 || Absent  
|-
|-
| 4 || GAGT || 4 || - || 22 || Absent  
| 4(51) || GAGT || 4 || - || 22 || Absent  
|-
|-
| 4 || GTGG || 7 || - || 22 || Absent  
| 4(52) || GTGG || 7 || - || 22 || Absent  
|-
|-
| 4 || TGGT || 4 || - || 22 || Absent  
| 4(53) || TGGT || 4 || - || 22 || Absent  
|-
|-
| 4 || GGTG || 6 || - || 22 || Absent  
| 4(54) || GGTG || 6 || - || 22 || Absent  
|-
|-
| 4 || GTGA || 8 || - || 22 || Absent  
| 4(55) || GTGA || 8 || - || 22 || Absent  
|-
|-
| 4 || GAGT || 4 || - || 23 || Absent  
| 4(56) || GAGT || 4 || - || 23 || Absent  
|-
|-
| 4 || TGAG || 5 || - || 23 || Absent  
| 4(57) || TGAG || 5 || - || 23 || Absent  
|-
|-
| 4 || AGTC || 5 || - || 23 || Absent  
| 4(58) || AGTC || 5 || - || 23 || Absent  
|-
|-
| 4 || GTCA || 12 || - || 23 || Absent  
| 4(59) || GTCA || 12 || - || 23 || Absent  
|-
|-
| 4 || TTCT || 7 || - || 25 || Absent  
| 4(60) || TTCT || 7 || - || 25 || Absent  
|-
|-
| 4 || TCTC || 6 || - || 25 || Absent  
| 4(61) || TCTC || 6 || - || 25 || Absent  
|-
|-
| 4 || CTCT || 3 || - || 25 || Absent  
| 4(62) || CTCT || 3 || - || 25 || Absent  
|-
|-
| 4 || CGTA || 4 || - || 26 || Absent  
| 4(63) || CGTA || 4 || - || 26 || Absent  
|-
|-
| 4 || ACGT || 24 || - || 26 || Absent  
| 4(64) || ACGT || 24 || - || 26 || Absent  
|-
|-
| 4 || TACG || 4 || - || 26 || Absent  
| 4(65) || TACG || 4 || - || 26 || Absent  
|-
|-
| 4 || CGTG || 27 || - || 27 || Absent  
| 4(66) || CGTG || 27 || - || 27 || Absent  
|-
|-
| 4 || GTGT || 6 || - || 27 || Absent  
| 4(67) || GTGT || 6 || - || 27 || Absent  
|-
|-
| 4 || TGTC || 7 || - || 27 || Absent  
| 4(68) || TGTC || 7 || - || 27 || Absent  
|-
|-
| 4 || GTCC || 2 || - || 27 || Absent  
| 4(69) || GTCC || 2 || - || 27 || Absent  
|-
|-
| 4 || ATCG || 2 || - || 28 || Absent  
| 4(70) || ATCG || 2 || - || 28 || Absent  
|-
|-
| 4 || CGAT || 3 || - || 28 || Absent  
| 4(71) || CGAT || 3 || - || 28 || Absent  
|-
|-
| 4 || GATC || 4 || - || 28 || Absent  
| 4(72) || GATC || 4 || - || 28 || Absent  
|-
|-
| 4 || TCGA || 4 || - || 28 || Absent  
| 4(73) || TCGA || 4 || - || 28 || Absent  
|-
|-
| 4 || GTAT || 3 || - || 32 || Absent  
| 4(74) || GTAT || 3 || - || 32 || Absent  
|-
|-
| 4 || GACG || 8 || - || 32 || Absent  
| 4(75) || GACG || 8 || - || 32 || Absent  
|-
|-
| 4 || TGAC || 15 || - || 32 || Absent  
| 4(76) || TGAC || 15 || - || 32 || Absent  
|-
|-
| 4 || ATGT || 6 || - || 50 || Absent  
| 4(77) || GAGG || 3 || - || 33 || Absent  
|-
|-
| 4(34,256) || TAAT || 3 || - || 90,254 || Absent,Present
| 4(78) || AGGC || 3 || - || 33 || Absent  
|-
|-
| 4 || GTGA || 7 || - || 137 || Absent  
| 4(79) || GGCC || 6 || - || 33 || Absent  
|-
|-
| 4 || TGAA || 5 || - || 137 || Absent  
| 4(80) || GCCA || 8 || - || 33 || Absent  
|-
|-
| 4 || GAAA || 14 || - || 137 || Absent  
| 4(81) || CCAT || 15 || - || 33 || Absent  
|-
|-
| 4(33) || AAAT || 8 || 7.64 ± 2.63 || 137 || Absent  
| 4(82) || CATC || 11 || - || 33 || Absent
|-
| 4(83) || ATCT || 6 || - || 33 || Absent
|-
| 4(84) || ATGT || 6 || - || 50 || Absent
|-
| 4(85) || TAAT || 3 || - || 90,254 || Absent,Present
|-
| 4(86) || GTGA || 7 || - || 137 || Absent
|-
| 4(87) || TGAA || 5 || - || 137 || Absent
|-
| 4(88) || GAAA || 14 || - || 137 || Absent
|-
| 4(89,256) || AAAT || 8 || 7.64 ± 2.63 || 137 || Absent  
|-
|-
| 5(1) || ATAAA || 3 || 0.0 ± 0.0 || 1 || Present  
| 5(1) || ATAAA || 3 || 0.0 ± 0.0 || 1 || Present  
Line 477: Line 491:
| 5(70) || CGTAT || 2 || - || 32 || Absent  
| 5(70) || CGTAT || 2 || - || 32 || Absent  
|-
|-
| 5(71) || TGTGA || 2 || 3.43 ± 1.92 || 137 || Absent  
| 5(71) || CGTAT || 2 || - || 32 || Absent
|-
| 5(72) || GAGGC || 1 || - || 33 || Absent
|-
| 5(73) || AGGCC || 2 || - || 33 || Absent
|-
| 5(74) || GGCCA || 2 || - || 33 || Absent
|-
| 5(75) || GCCAT || 4 || - || 33 || Absent
|-
| 5(76) || CCATC || 4 || - || 33 || Absent
|-
| 5(77) || CATCT || 2 || - || 33 || Absent
|-
| 5(78) || GTGAA || 3 || 3.38 ± 1.72 || 137 || Absent  
|-
| 5(79,1024) || ATGTG || 3 || 3.33 ± 1.55 || 137 || Absent
|-
| 6(1) || TATAAA || 2 || 2.0 || 1 || Present
|-
| 6(2) || ATAAAA || 1 || 1.5 || 1 || Present
|-
| 6(3) || AGCCGC || 1 || - || 8 || Present
|-
|-
| 5(72) || GTGAA || 3 || 3.38 ± 1.72 || 137 || Absent
| 6(4) || GCCGCC || 4 || 2.375 ± 1.563 || 8 || Present
|-
|-
| 5(73,1024) || ATGTG || 3 || 3.33 ± 1.55 || 137 || Absent  
| 6(5) || CTAACC || 1 || 1.5 || 11 || Absent  
|-
|-
| 6 || TATAAA || 2 || 2.0 || 1 || Present
| 6(6) || GTTGGC || 1 || - || 12 || Absent
|-
|-
| 6 || ATAAAA || 1 || 1.5 || 1 || Present
| 6(7) || TTGGCA || 1 || - || 12 || Absent
|-
|-
| 6 || AGCCGC || 1 || - || 8 || Present
| 6(8) || TGGCAT || 1 || - || 12 || Absent
|-
|-
| 6 || GCCGCC || 4 || 2.375 ± 1.563 || 8 || Present
| 6(9) || GGCATG || 1 || - || 12 || Absent
|-
|-
| 6 || CTAACC || 1 || 1.5 || 11 || Absent  
| 6(10) || GCATGG || 1 || - || 12 || Absent  
|-
|-
| 6 || GTTGGC || 1 || - || 12 || Absent  
| 6(11) || CATGGC || 1 || - || 12 || Absent  
|-
|-
| 6 || TTGGCA || 1 || - || 12 || Absent  
| 6(12) || ATGGCA || 1 || - || 12 || Absent  
|-
|-
| 6 || TGGCAT || 1 || - || 12 || Absent  
| 6(13) || GGCAAC || 1 || - || 12 || Absent  
|-
|-
| 6 || GGCATG || 1 || - || 12 || Absent  
| 6(14) || TGGCAA || 2 || - || 12 || Absent  
|-
|-
| 6 || GCATGG || 1 || - || 12 || Absent  
| 6(15) || CCAATC || 2 || - || 14 || Absent  
|-
|-
| 6 || CATGGC || 1 || - || 12 || Absent  
| 6(16) || TACCCC || 1 || - || 15 || Absent  
|-
|-
| 6 || ATGGCA || 1 || - || 12 || Absent  
| 6(17) || ACCCCC || 1 || - || 15 || Absent  
|-
|-
| 6 || GGCAAC || 1 || - || 12 || Absent  
| 6(18) || CCCCCC || 1 || - || 15 || Absent  
|-
|-
| 6 || TGGCAA || 2 || - || 12 || Absent  
| 6(19) || CCCCCT || 1 || - || 15 || Absent  
|-
|-
| 6 || CCAATC || 2 || - || 14 || Absent  
| 6(20) || TTACCC || 3 || - || 15 || Absent  
|-
|-
| 6 || TACCCC || 1 || - || 15 || Absent  
| 6(21) || CCCCTT || 2 || - || 15 || Absent  
|-
|-
| 6 || ACCCCC || 1 || - || 15 || Absent  
| 6(22) || TTTCGT || 1 || - || 16 || Absent  
|-
|-
| 6 || CCCCCC || 1 || - || 15 || Absent  
| 6(23) || TTCGTT || 1 || - || 16 || Absent  
|-
|-
| 6 || CCCCCT || 1 || - || 15 || Absent  
| 6(24) || TCGTTG || 1 || - || 16 || Absent  
|-
|-
| 6 || TTACCC || 3 || - || 15 || Absent  
| 6(25) || CGTTGG || 1 || - || 16 || Absent  
|-
|-
| 6 || CCCCTT || 2 || - || 15 || Absent  
| 6(26) || GTTGGA || 1 || - || 16 || Absent  
|-
|-
| 6 || TTTCGT || 1 || - || 16 || Absent  
| 6(27) || TTGGAA || 1 || - || 16 || Absent  
|-
|-
| 6 || TTCGTT || 1 || - || 16 || Absent  
| 6(28) || TGGAAG || 1 || - || 16 || Absent  
|-
|-
| 6 || TCGTTG || 1 || - || 16 || Absent  
| 6(29) || GGAAGC || 1 || - || 16 || Absent  
|-
|-
| 6 || CGTTGG || 1 || - || 16 || Absent  
| 6(30) || GAAGCG || 1 || - || 16 || Absent  
|-
|-
| 6 || GTTGGA || 1 || - || 16 || Absent  
| 6(31) || AAGCGG || 1 || - || 16 || Absent  
|-
|-
| 6 || TTGGAA || 1 || - || 16 || Absent  
| 6(32) || AGCGGG || 1 || - || 16 || Absent  
|-
|-
| 6 || TGGAAG || 1 || - || 16 || Absent  
| 6(33) || GCGGGA || 1 || - || 16 || Absent  
|-
|-
| 6 || GGAAGC || 1 || - || 16 || Absent  
| 6(34) || TATCCA || 5 || - || 18 & 19 || Absent  
|-
|-
| 6 || GAAGCG || 1 || - || 16 || Absent  
| 6(35) || ATCCAC || 5 || - || 18 & 19 || Absent  
|-
|-
| 6 || AAGCGG || 1 || - || 16 || Absent  
| 6(36) || TACCGA || 1 || - || 21 || Absent  
|-
|-
| 6 || AGCGGG || 1 || - || 16 || Absent  
| 6(37) || ACCGAC || 1 || - || 21 || Absent  
|-
|-
| 6 || GCGGGA || 1 || - || 16 || Absent  
| 6(38) || CCGACA || 1 || - || 21 || Absent  
|-
|-
| 6 || TATCCA || 5 || - || 18 & 19 || Absent  
| 6(39) || CGACAT || 1 || - || 21 || Absent  
|-
|-
| 6 || ATCCAC || 5 || - || 18 & 19 || Absent  
| 6(40) || AGTGGT || 1 || - || 22 || Absent  
|-
|-
| 6 || TACCGA || 1 || - || 21 || Absent  
| 6(41) || GTGGTG || 1 || - || 22 || Absent  
|-
|-
| 6 || ACCGAC || 1 || - || 21 || Absent  
| 6(42) || GAGTGG || 2 || - || 22 || Absent  
|-
|-
| 6 || CCGACA || 1 || - || 21 || Absent  
| 6(43) || TGGTGA || 2 || - || 22 || Absent  
|-
|-
| 6 || CGACAT || 1 || - || 21 || Absent  
| 6(44) || TGAGTC || 1 || - || 23 || Absent  
|-
|-
| 6 || AGTGGT || 1 || - || 22 || Absent  
| 6(45) || GAGTCA || 1 || - || 23 || Absent  
|-
|-
| 6 || GTGGTG || 1 || - || 22 || Absent  
| 6(46) || TTCTCT || 1 || - || 25 || Absent  
|-
|-
| 6 || GAGTGG || 2 || - || 22 || Absent  
| 6(47) || TACGTA || 1 || - || 26 || Absent  
|-
|-
| 6 || TGGTGA || 2 || - || 22 || Absent  
| 6(48) || GTGTCC || 1 || - || 27 || Absent  
|-
|-
| 6 || TGAGTC || 1 || - || 23 || Absent  
| 6(49) || ACGTGT || 3 || - || 27 || Absent  
|-
|-
| 6 || GAGTCA || 1 || - || 23 || Absent  
| 6(50) || CGTGTC || 2 || - || 27 || Absent  
|-
|-
| 6 || TTCTCT || 1 || - || 25 || Absent  
| 6(51) || CGATCG || 1 || - || 28 || Absent  
|-
|-
| 6 || TACGTA || 1 || - || 26 || Absent  
| 6(52) || GATCGA || 1 || - || 28 || Absent  
|-
|-
| 6 || GTGTCC || 1 || - || 27 || Absent  
| 6(53) || TCGATC || 1 || - || 28 || Absent  
|-
|-
| 6 || ACGTGT || 3 || - || 27 || Absent  
| 6(54) || ATCGAT || 2 || - || 28 || Absent  
|-
|-
| 6 || CGTGTC || 2 || - || 27 || Absent  
| 6(55) || TGACGT || 6 || - || 32 || Absent  
|-
|-
| 6 || CGATCG || 1 || - || 28 || Absent  
| 6(56) || GACGTA || 1 || - || 32 || Absent  
|-
|-
| 6 || GATCGA || 1 || - || 28 || Absent  
| 6(57) || ACGTAT || 1 || - || 32 || Absent  
|-
|-
| 6 || TCGATC || 1 || - || 28 || Absent  
| 6(58) || GAGGCC || 1 || - || 33 || Absent  
|-
|-
| 6 || ATCGAT || 2 || - || 28 || Absent  
| 6(59) || AGGCCA || 1 || - || 33 || Absent  
|-
|-
| 6(40) || TGACGT || 6 || - || 32 || Absent  
| 6(60) || GGCCAT || 1 || - || 33 || Absent  
|-
|-
| 6(40) || GACGTA || 1 || - || 32 || Absent  
| 6(61) || GCCATC || 1 || - || 33 || Absent  
|-
|-
| 6(41) || ACGTAT || 1 || - || 32 || Absent  
| 6(62) || CCATCT || 2 || - || 33 || Absent  
|-
|-
| 6 || ATGTGA || 2 || 2.222 ± 1.592 || 137 || Absent  
| 6(62) || ATGTGA || 2 || 2.222 ± 1.592 || 137 || Absent  
|-
|-
| 6 || TGTGAA || 2 || 2.10 ± 1.35 || 137 || Absent  
| 6(63) || TGTGAA || 2 || 2.10 ± 1.35 || 137 || Absent  
|-
|-
| 6(24,4096) || TGAAAT || 3 || 2.36 ± 1.32 || 137 || Absent  
| 6(64,4096) || TGAAAT || 3 || 2.36 ± 1.32 || 137 || Absent  
|-
|-
| 7(1) || TATAAAA || 1 || 1.0 ± 0.0 || 1 || Present  
| 7(1) || TATAAAA || 1 || 1.0 ± 0.0 || 1 || Present  
Line 693: Line 729:
| 7(44) || GGCCATC || 1 || 1.0 || 33 || Absent  
| 7(44) || GGCCATC || 1 || 1.0 || 33 || Absent  
|-
|-
| 7(46) || GCCATCT || 1 || 1.0 || 33 || Absent  
| 7(45) || GCCATCT || 1 || 1.0 || 33 || Absent  
|-
|-
| 7(47) || ATGTGAA || 2 || - || 137 || Absent  
| 7(46) || ATGTGAA || 2 || - || 137 || Absent  
|-
|-
| 7(48) || TGTGAAA || 2 || - || 137 || Absent  
| 7(47) || TGTGAAA || 2 || - || 137 || Absent  
|-
|-
| 7(49) || GTGAAAT || 2 || - || 137 || Absent  
| 7(48) || GTGAAAT || 2 || - || 137 || Absent  
|-
|-
| 7(50) || TTCACAT || 1 || - || 138 || Present  
| 7(49) || TTCACAT || 1 || - || 138 || Present  
|-
|-
| 7(51,16384) || TCACATG || 1 || - || 138 || Present  
| 7(50,16384) || TCACATG || 1 || - || 138 || Present  
|-
|-
| 8(1) || GTTGGCAT || 1 || - || 12 || Absent  
| 8(1) || GTTGGCAT || 1 || - || 12 || Absent  
Line 763: Line 799:
| 8(29) || GATCGATC || 1 || - || 28 || Absent  
| 8(29) || GATCGATC || 1 || - || 28 || Absent  
|-
|-
| 8(27) || TGACGTAT || 1 || - || 32 || Absent  
| 8(30) || TGACGTAT || 1 || - || 32 || Absent  
|-
|-
| 8(28) || GAGGCCAT || 1 || 1.0 || 33 || Absent  
| 8(31) || GAGGCCAT || 1 || 1.0 || 33 || Absent  
|-
|-
| 8(29) || AGGCCATC || 1 || 1.0 || 33 || Absent  
| 8(32) || AGGCCATC || 1 || 1.0 || 33 || Absent  
|-
|-
| 8(30) || GGCCATCT || 1 || 1.0 || 33 || Absent  
| 8(33) || GGCCATCT || 1 || 1.0 || 33 || Absent  
|-
|-
| 8(31) || ATGTGAAA || 2 || - || 137 || Absent  
| 8(34) || ATGTGAAA || 2 || - || 137 || Absent  
|-
|-
| 8(32) || TGTGAAAT || 2 || - || 137 || Absent  
| 8(35) || TGTGAAAT || 2 || - || 137 || Absent  
|-
|-
| 8(33,65536) || TTCACATG || 1 || 1.2 ± 0.32 || 138 || Present  
| 8(36,65536) || TTCACATG || 1 || 1.2 ± 0.32 || 138 || Present  
|-
|-
| 9 || CATGGCAAC || 1 || 1.0 || 12 || Absent  
| 9(1) || CATGGCAAC || 1 || 1.0 || 12 || Absent  
|-
|-
| 9 || GCATGGCAA || 1 || 1.0 || 12 || Absent  
| 9(2) || GCATGGCAA || 1 || 1.0 || 12 || Absent  
|-
|-
| 9 || GGCATGGCA || 1 || 1.0 || 12 || Absent  
| 9(3) || GGCATGGCA || 1 || 1.0 || 12 || Absent  
|-
|-
| 9 || TGGCATGGC || 1 || 1.0 || 12 || Absent  
| 9(4) || TGGCATGGC || 1 || 1.0 || 12 || Absent  
|-
|-
| 9 || TTGGCATGG || 1 || 1.0 || 12 || Absent  
| 9(5) || TTGGCATGG || 1 || 1.0 || 12 || Absent  
|-
|-
| 9 || GTTGGCATG || 1 || 1.0 || 12 || Absent  
| 9(6) || GTTGGCATG || 1 || 1.0 || 12 || Absent  
|-
|-
| 9 || TTACCCCCC || 1 || 1.0 || 15 || Absent  
| 9(7) || TTACCCCCC || 1 || 1.0 || 15 || Absent  
|-
|-
| 9 || TACCCCCCC || 1 || 1.0 || 15 || Absent  
| 9(8) || TACCCCCCC || 1 || 1.0 || 15 || Absent  
|-
|-
| 9 || ACCCCCCCT || 1 || 1.0 || 15 || Absent  
| 9(9) || ACCCCCCCT || 1 || 1.0 || 15 || Absent  
|-
|-
| 9 || CCCCCCCTT || 1 || 1.0 || 15 || Absent  
| 9(10) || CCCCCCCTT || 1 || 1.0 || 15 || Absent  
|-
|-
| 9 || TTTCGTTGG || 1 || 1.0 || 16 || Absent  
| 9(11) || TTTCGTTGG || 1 || 1.0 || 16 || Absent  
|-
|-
| 9 || TTCGTTGGA || 1 || 1.0 || 16 || Absent  
| 9(12) || TTCGTTGGA || 1 || 1.0 || 16 || Absent  
|-
|-
| 9 || TCGTTGGAA || 1 || 1.0 || 16 || Absent  
| 9(13) || TCGTTGGAA || 1 || 1.0 || 16 || Absent  
|-
|-
| 9 || CGTTGGAAG || 1 || 1.0 || 16 || Absent  
| 9(14) || CGTTGGAAG || 1 || 1.0 || 16 || Absent  
|-
|-
| 9 || GTTGGAAGC || 1 || 1.0 || 16 || Absent  
| 9(15) || GTTGGAAGC || 1 || 1.0 || 16 || Absent  
|-
|-
| 9 || TTGGAAGCG || 1 || 1.0 || 16 || Absent  
| 9(16) || TTGGAAGCG || 1 || 1.0 || 16 || Absent  
|-
|-
| 9 || TGGAAGCGG || 1 || 1.0 || 16 || Absent  
| 9(17) || TGGAAGCGG || 1 || 1.0 || 16 || Absent  
|-
|-
| 9 || GGAAGCGGG || 1 || 1.0 || 16 || Absent  
| 9(18) || GGAAGCGGG || 1 || 1.0 || 16 || Absent  
|-
|-
| 9 || GAAGCGGGA || 1 || 1.0 || 16 || Absent  
| 9(19) || GAAGCGGGA || 1 || 1.0 || 16 || Absent  
|-
|-
| 9 || TACCGACAT || 1 || - || 21 || Absent  
| 9(20) || TACCGACAT || 1 || - || 21 || Absent  
|-
|-
| 9 || GAGTGGTGA || 1 || - || 22 || Absent  
| 9(21) || GAGTGGTGA || 1 || - || 22 || Absent  
|-
|-
| 9 || CGATCGATC || 1 || - || 28 || Absent  
| 9(22) || CGATCGATC || 1 || - || 28 || Absent  
|-
|-
| 9(21) || ATGTGAAAT || 2 || 1.14 ± 0.24 || 137 || Absent  
| 9(23) || ATGTGAAAT || 2 || 1.14 ± 0.24 || 137 || Absent  
|-
|-
| 9(22) || GAGGCCATC || 1 || 1.0 || 33 || Absent  
| 9(24) || GAGGCCATC || 1 || 1.0 || 33 || Absent  
|-
|-
| 9(23,262144) || AGGCCATCT || 1 || 1.0 || 33 || Absent  
| 9(25,262144) || AGGCCATCT || 1 || 1.0 || 33 || Absent  
|-
|-
| 10(1) || GCATGGCAAC || 1 || 1.0 || 12 || Absent  
| 10(1) || GCATGGCAAC || 1 || 1.0 || 12 || Absent  
Line 861: Line 897:
| 10(17,1048576) || GAGGCCATCT || 1 || 1.0 || 33 || Absent  
| 10(17,1048576) || GAGGCCATCT || 1 || 1.0 || 33 || Absent  
|-
|-
| 11 || GGCATGGCAAC || 1 || 1.0 || 12 || Absent  
| 11(1) || GGCATGGCAAC || 1 || 1.0 || 12 || Absent  
|-
|-
| 11 || TGGCATGGCAA || 1 || 1.0 || 12 || Absent  
| 11(2) || TGGCATGGCAA || 1 || 1.0 || 12 || Absent  
|-
|-
| 11 || TTGGCATGGCA || 1 || 1.0 || 12 || Absent  
| 11(3) || TTGGCATGGCA || 1 || 1.0 || 12 || Absent  
|-
|-
| 11 || GTTGGCATGGC || 1 || 1.0 || 12 || Absent  
| 11(4) || GTTGGCATGGC || 1 || 1.0 || 12 || Absent  
|-
|-
| 11 || TTACCCCCCCT || 1 || 1.0 || 15 || Absent  
| 11(5) || TTACCCCCCCT || 1 || 1.0 || 15 || Absent  
|-
|-
| 11 || TACCCCCCCTT || 1 || 1.0 || 15 || Absent  
| 11(6) || TACCCCCCCTT || 1 || 1.0 || 15 || Absent  
|-
|-
| 11 || TTTCGTTGGAA || 1 || 1.0 || 16 || Absent  
| 11(7) || TTTCGTTGGAA || 1 || 1.0 || 16 || Absent  
|-
|-
| 11 || TTCGTTGGAAG || 1 || 1.0 || 16 || Absent  
| 11(8) || TTCGTTGGAAG || 1 || 1.0 || 16 || Absent  
|-
|-
| 11 || TCGTTGGAAGC || 1 || 1.0 || 16 || Absent  
| 11(9) || TCGTTGGAAGC || 1 || 1.0 || 16 || Absent  
|-
|-
| 11 || CGTTGGAAGCG || 1 || 1.0 || 16 || Absent  
| 11(10) || CGTTGGAAGCG || 1 || 1.0 || 16 || Absent  
|-
|-
| 11 || GTTGGAAGCGG || 1 || 1.0 || 16 || Absent  
| 11(11) || GTTGGAAGCGG || 1 || 1.0 || 16 || Absent  
|-
|-
| 11 || TTGGAAGCGGG || 1 || 1.0 || 16 || Absent  
| 11(12) || TTGGAAGCGGG || 1 || 1.0 || 16 || Absent  
|-
|-
| 11(13,4194304) || TGGAAGCGGGA || 1 || 1.0 || 16 || Absent  
| 11(13,4194304) || TGGAAGCGGGA || 1 || 1.0 || 16 || Absent  
|-
|-
| 12 || TGGCATGGCAAC || 1 || 1.0 || 12 || Absent  
| 12(1) || TGGCATGGCAAC || 1 || 1.0 || 12 || Absent  
|-
|-
| 12 || TTGGCATGGCAA || 1 || 1.0 || 12 || Absent  
| 12(2) || TTGGCATGGCAA || 1 || 1.0 || 12 || Absent  
|-
|-
| 12 || GTTGGCATGGCA || 1 || 1.0 || 12 || Absent  
| 12(3) || GTTGGCATGGCA || 1 || 1.0 || 12 || Absent  
|-
|-
| 12 || TTACCCCCCCTT || 1 || 1.0 || 15 || Absent  
| 12(4) || TTACCCCCCCTT || 1 || 1.0 || 15 || Absent  
|-
|-
| 12 || TTTCGTTGGAAG || 1 || 1.0 || 16 || Absent  
| 12(5) || TTTCGTTGGAAG || 1 || 1.0 || 16 || Absent  
|-
|-
| 12 || TTCGTTGGAAGC || 1 || 1.0 || 16 || Absent  
| 12(6) || TTCGTTGGAAGC || 1 || 1.0 || 16 || Absent  
|-
|-
| 12 || TCGTTGGAAGCG || 1 || 1.0 || 16 || Absent  
| 12(7) || TCGTTGGAAGCG || 1 || 1.0 || 16 || Absent  
|-
|-
| 12 || CGTTGGAAGCGG || 1 || 1.0 || 16 || Absent  
| 12(8) || CGTTGGAAGCGG || 1 || 1.0 || 16 || Absent  
|-
|-
| 12 || GTTGGAAGCGGG || 1 || 1.0 || 16 || Absent  
| 12(9) || GTTGGAAGCGGG || 1 || 1.0 || 16 || Absent  
|-
|-
| 12(10,16777216) || TTGGAAGCGGGA || 1 || 1.0 || 16 || Absent  
| 12(10,16777216) || TTGGAAGCGGGA || 1 || 1.0 || 16 || Absent  
|-
|-
| 13 || TTGGCATGGCAAC || 1 || 1.0 || 12 || Absent  
| 13(1) || TTGGCATGGCAAC || 1 || 1.0 || 12 || Absent  
|-
|-
| 13 || GTTGGCATGGCAA || 1 || 1.0 || 12 || Absent  
| 13(2) || GTTGGCATGGCAA || 1 || 1.0 || 12 || Absent  
|-
|-
| 13 || TTTCGTTGGAAGC || 1 || 1.0 || 16 || Absent  
| 13(3) || TTTCGTTGGAAGC || 1 || 1.0 || 16 || Absent  
|-
|-
| 13 || TTCGTTGGAAGCG || 1 || 1.0 || 16 || Absent  
| 13(4) || TTCGTTGGAAGCG || 1 || 1.0 || 16 || Absent  
|-
|-
| 13 || TCGTTGGAAGCGG || 1 || 1.0 || 16 || Absent  
| 13(5) || TCGTTGGAAGCGG || 1 || 1.0 || 16 || Absent  
|-
|-
| 13 || CGTTGGAAGCGGG || 1 || 1.0 || 16 || Absent  
| 13(6) || CGTTGGAAGCGGG || 1 || 1.0 || 16 || Absent  
|-
|-
| 13(7,67108864) || GTTGGAAGCGGGA || 1 || 1.0 || 16 || Absent  
| 13(7,67108864) || GTTGGAAGCGGGA || 1 || 1.0 || 16 || Absent  
|-
|-
| 14 || GTTGGCATGGCAAC || 1 || 1.0 || 12 || Absent  
| 14(1) || GTTGGCATGGCAAC || 1 || 1.0 || 12 || Absent  
|-
|-
| 14 || TTTCGTTGGAAGCG || 1 || 1.0 || 16 || Absent  
| 14(2) || TTTCGTTGGAAGCG || 1 || 1.0 || 16 || Absent  
|-
|-
| 14 || TTCGTTGGAAGCGG || 1 || 1.0 || 16 || Absent  
| 14(3) || TTCGTTGGAAGCGG || 1 || 1.0 || 16 || Absent  
|-
|-
| 14 || TCGTTGGAAGCGGG || 1 || 1.0 || 16 || Absent  
| 14(4) || TCGTTGGAAGCGGG || 1 || 1.0 || 16 || Absent  
|-
|-
| 14(5,268435456) || CGTTGGAAGCGGGA || 1 || 1.0 || 16 || Absent  
| 14(5,268435456) || CGTTGGAAGCGGGA || 1 || 1.0 || 16 || Absent  
|-
|-
| 15 || TTTCGTTGGAAGCGG || 1 || 1.0 || 16 || Absent  
| 15(1) || TTTCGTTGGAAGCGG || 1 || 1.0 || 16 || Absent  
|-
|-
| 15 || TTCGTTGGAAGCGGG || 1 || 1.0 || 16 || Absent  
| 15(2) || TTCGTTGGAAGCGGG || 1 || 1.0 || 16 || Absent  
|-
|-
| 15(3,1073741824) || TCGTTGGAAGCGGGA || 1 || 1.0 || 16 || Absent  
| 15(3,1073741824) || TCGTTGGAAGCGGGA || 1 || 1.0 || 16 || Absent  
|-
|-
| 16 || TTCGTTGGAAGCGGGA || 1 || 1.0 || 16 || Absent  
| 16(1) || TTCGTTGGAAGCGGGA || 1 || 1.0 || 16 || Absent  
|-
|-
| 16(2,4294967296) || TTTCGTTGGAAGCGGG || 1 || 1.0 || 16 || Absent  
| 16(2,4294967296) || TTTCGTTGGAAGCGGG || 1 || 1.0 || 16 || Absent  

Revision as of 07:27, 11 March 2024

Tabulation of counts

Number of non-degenerate nucleotides versus number of response elements
Number of nucleotides Letters of nucleotides Number of response elements Average ± deviation Order of list Present or Absent
1(1) A 295 295.0 ± 0.0 1 Present
1(2) T 285 - 1 Present
1(3) G 286 - 3 Present
1(4) C 300 291.5 ± 6 5, 134 Absent, Present
2(1) AA 105 105 ± 0.0 1 Present
2(2) AT 105 105 ± 0.0 1 Present
2(3) TA 74 - 1 Present
2(4) AC 103 - 5 Absent
2(5) CG 102 - 5 Absent
2(6) CA 136 - 7 Present
2(7) TG 112 - 7 Present
2(8) AG 63 - 8 Present
2(9) CC 101 - 8 Present
2(10) GC 74 - 8 Present
2(11) CT 67 - 11 Absent
2(12) GG 92 - 12 Absent
2(13) GT 106 - 12 Absent
2(14) TT 91 - 12 Absent
2(15) TC 122 - 14 Absent
2(16,16) GA 106 97.4 ± 15.5 16 Absent
3(1) TAT 20 20.0 ± 0.0 1 Present
3(2) ATA 23 - 1 Present
3(3) TAA 24 - 1 Present
3(4) AAA 35 - 1 Present
3(5) AAC 22 - 5, 80 Absent, Present
3(6) ACG 39 - 5 Absent
3(7) AGC 8 - 8 Present
3(8) GCC 30 - 8 Present
3(9) CCG 21 - 8 Present
3(10) CTA 11 - 11 Absent
3(11) ACC 25 - 11 Absent
3(12) GTT 17 - 12 Absent
3(13) GGC 25 - 12 Absent
3(14) TTG 13 - 12 Absent
3(15) GCA 10 - 12 Absent
3(16) CAA 24 - 12 Absent
3(17) TGG 19 - 12 Absent
3(18) CAT 32 - 12 Absent
3(19) ATG 17 - 12 Absent
3(20) CCA 36 - 14 Absent
3(21) AAT 23 - 14 Absent
3(22) ATC 25 - 14 Absent
3(23) TTA 16 - 15 Absent
3(24) CCC 25 - 15 Absent
3(25) CCT 18 - 15 Absent
3(26) TAC 15 - 15 Absent
3(27) TTT 18 - 16 Absent
3(28) TCG 11 - 16 Absent
3(29) GGA 16 - 16 Absent
3(30) GCG 24 - 16 Absent
3(31) CGT 40 - 16 Absent
3(32) CGG 25 - 16 Absent
3(33) GAA 37 - 16 Absent
3(34) TTC 43 - 16 Absent
3(35) GGG 18 - 16 Absent
3(36) TCC 27 - 18 & 19 Absent
3(37) CAC 34 - 18 & 19 Absent
3(38) TGA 36 - 20 Absent
3(39) TCA 43 - 20 Absent
3(40) GAC 24 - 21 Absent
3(41) ACA 20 - 21 Absent
3(42) CGA 14 - 21 Absent
3(43) GTG 39 - 22 Absent
3(44) GGT 27 - 22 Absent
3(45) GAT 24,1092 24.21 ± 12.42 28 Absent
3(46) - - - - -
3(47) - - - - -
3(48) - - - - -
3(49) - - - - -
3(50) - - - - -
3(51) - - - - -
3(52) - - - - -
3(53) - - - - -
3(54) - - - - -
3(55) - - - - -
3(56) - - - - -
3(57) - - - - -
3(58) - - - - -
3(59) - - - - -
3(60) - - - - -
3(61) - - - - -
3(62) - - - - -
3(63) - - - - -
3(64,64) - - - - -
4(1) AAAA 6 6.0 ± 0.0 1 Present
4(2) TAAA 6 6.0 ± 0.0 1 Present
4(3) ATAA 10 7.33 ± 1.78 1 Present
4(4) TATA 8 7.5 ± 1.5 1 Present
4(5) AACG 4 6.8 ± 1.76 5 Absent
4(6) AGCC 2 6.0 ± 2.00 8 Present
4(7) GCCG 4 - 8 Present
4(8) CCGC 10 - 8 Present
4(9) CGCC 11 - 8 Present
4(10) CTAA 5 - 11 Absent
4(11) AACC 4 - 11 Absent
4(12) TAAC 6 - 11 Absent
4(13) GCAA 2 - 12 Absent
4(14) GTTG 3 - 12 Absent
4(15) TTGG 4 - 12 Absent
4(16) TGGC 6 - 12 Absent
4(17) GGCA 3 - 12 Absent
4(18) GCAT 5 - 12 Absent
4(19) CATG 7 - 12 Absent
4(20) ATGG 4 - 12 Absent
4(21) CAAC 3 - 12 Absent
4(22) CCAA 10 - 14 Absent
4(23) CCTT 2 - 15 Absent
4(24) TTAC 4 - 15 Absent
4(25) ACCC 7 - 15 Absent
4(26) CCCC 9 - 15 Absent
4(27) CCCT 10 - 15 Absent
4(28) TGGA 1 - 16 Absent
4(29) AAGC 1 - 16 Absent
4(30) TTTC 9 - 16 Absent
4(31) TTCG 4 - 16 Absent
4(32) TCGT 3 - 16 Absent
4(33) CGTT 3 - 16 Absent
4(34) GTTG 3 - 16 Absent
4(35) GGAA 4 - 16 Absent
4(36) GAAG 2 - 16 Absent
4(37) AGCG 2 - 16 Absent
4(38) GCGG 9 - 16 Absent
4(39) CGGG 4 - 16 Absent
4(40) GGGA 2 - 16 Absent
4(41) CCAC 12 - 18 & 19 Absent
4(42) TCCA 9 - 18 & 19 Absent
4(43) ATCC 6 - 18 & 19 Absent
4(44) TATC 6 - 18 & 19 Absent
4(45) ACCG 5 - 21 Absent
4(46) CCGA 3 - 21 Absent
4(47) CGAC 4 - 21 Absent
4(48) GACA 4 - 21 Absent
4(49) ACAT 4 - 21 Absent
4(50) AGTG 4 - 22 Absent
4(51) GAGT 4 - 22 Absent
4(52) GTGG 7 - 22 Absent
4(53) TGGT 4 - 22 Absent
4(54) GGTG 6 - 22 Absent
4(55) GTGA 8 - 22 Absent
4(56) GAGT 4 - 23 Absent
4(57) TGAG 5 - 23 Absent
4(58) AGTC 5 - 23 Absent
4(59) GTCA 12 - 23 Absent
4(60) TTCT 7 - 25 Absent
4(61) TCTC 6 - 25 Absent
4(62) CTCT 3 - 25 Absent
4(63) CGTA 4 - 26 Absent
4(64) ACGT 24 - 26 Absent
4(65) TACG 4 - 26 Absent
4(66) CGTG 27 - 27 Absent
4(67) GTGT 6 - 27 Absent
4(68) TGTC 7 - 27 Absent
4(69) GTCC 2 - 27 Absent
4(70) ATCG 2 - 28 Absent
4(71) CGAT 3 - 28 Absent
4(72) GATC 4 - 28 Absent
4(73) TCGA 4 - 28 Absent
4(74) GTAT 3 - 32 Absent
4(75) GACG 8 - 32 Absent
4(76) TGAC 15 - 32 Absent
4(77) GAGG 3 - 33 Absent
4(78) AGGC 3 - 33 Absent
4(79) GGCC 6 - 33 Absent
4(80) GCCA 8 - 33 Absent
4(81) CCAT 15 - 33 Absent
4(82) CATC 11 - 33 Absent
4(83) ATCT 6 - 33 Absent
4(84) ATGT 6 - 50 Absent
4(85) TAAT 3 - 90,254 Absent,Present
4(86) GTGA 7 - 137 Absent
4(87) TGAA 5 - 137 Absent
4(88) GAAA 14 - 137 Absent
4(89,256) AAAT 8 7.64 ± 2.63 137 Absent
5(1) ATAAA 3 0.0 ± 0.0 1 Present
5(2) TATAA 4 3.5 ± 0.5 1 Present
5(3) TAAAA 1 2.67 1 Present
5(4) AGCCG 1 2.25 8 Present
5(5) GCCGC 4 2.60 ± 1.28 8 Present
5(6) CCGCC 9 3.67 ± 2 8 Present
5(7) CTAAC 1 - 11 Absent
5(8) TAACC 2 - 11 Absent
5(9) GGCAT 1 - 12 Absent
5(10) ATGGC 1 - 12 Absent
5(11) GCAAC 1 - 12 Absent
5(12) TGGCA 2 - 12 Absent
5(13) GGCAA 2 - 12 Absent
5(14) GTTGG 2 - 12 Absent
5(15) TTGGC 2 - 12 Absent
5(16) GCATG 2 - 12 Absent
5(17) CATGG 2 - 12 Absent
5(18) CAATC 2 - 14 Absent
5(19) CCAAT 5 - 14 Absent
5(20) TTACC 3 - 15 Absent
5(21) TACCC 3 - 15 Absent
5(22) CCCTT 2 - 15 Absent
5(23) ACCCC 2 - 15 Absent
5(24) CCCCC 3 - 15 Absent
5(25) CCCCT 4 - 15 Absent
5(26) TTCGT 1 - 16 Absent
5(27) TCGTT 1 - 16 Absent
5(28) CGTTG 1 - 16 Absent
5(29) TTGGA 1 - 16 Absent
5(30) TGGAA 1 - 16 Absent
5(31) GAAGC 1 - 16 Absent
5(32) AAGCG 1 - 16 Absent
5(33) AGCGG 1 - 16 Absent
5(34) CGGGA 1 - 16 Absent
5(35) TTTCG 2 - 16 Absent
5(36) GGAAG 2 - 16 Absent
5(37) GCGGG 3 - 16 Absent
5(38) TATCC 5 - 18 & 19 Absent
5(39) ATCCA 5 - 18 & 19 Absent
5(40) TCCAC 5 - 18 & 19 Absent
5(41) TACCG 1 - 21 Absent
5(42) ACCGA 1 - 21 Absent
5(43) CGACA 1 - 21 Absent
5(44) CCGAC 2 - 21 Absent
5(45) GACAT 2 - 21 Absent
5(46) GAGTG 2 - 22 Absent
5(47) GTGGT 1 - 22 Absent
5(48) AGTGG 2 - 22 Absent
5(49) TGGTG 2 - 22 Absent
5(50) GGTGA 3 - 22 Absent
5(51) GAGTC 1 - 23 Absent
5(52) TGAGT 4 - 23 Absent
5(53) AGTCA 3 - 23 Absent
5(54) TTCTC 1 - 25 Absent
5(55) TCTCT 1 - 25 Absent
5(56) TACGT 3 - 26 Absent
5(57) ACGTA 3 - 26 Absent
5(58) TGTCC 1 - 27 Absent
5(59) ACGTG 15 - 27,37 Absent,Present
5(60) CGTGT 5 - 27 Absent
5(61) GTGTC 3 - 27 Absent
5(62) CGATC 1 - 28 Absent
5(63) GATCG 1 - 28 Absent
5(64) CGATC 1 - 28 Absent
5(65) ATCGAT 2 - 28 Absent
5(66) TCGAT 2 - 28 Absent
5(67) ACGAT 1 - 31 Absent
5(68) TGACG 7 - 32 Absent
5(69) GACGT 7 - 32 Absent
5(70) CGTAT 2 - 32 Absent
5(71) CGTAT 2 - 32 Absent
5(72) GAGGC 1 - 33 Absent
5(73) AGGCC 2 - 33 Absent
5(74) GGCCA 2 - 33 Absent
5(75) GCCAT 4 - 33 Absent
5(76) CCATC 4 - 33 Absent
5(77) CATCT 2 - 33 Absent
5(78) GTGAA 3 3.38 ± 1.72 137 Absent
5(79,1024) ATGTG 3 3.33 ± 1.55 137 Absent
6(1) TATAAA 2 2.0 1 Present
6(2) ATAAAA 1 1.5 1 Present
6(3) AGCCGC 1 - 8 Present
6(4) GCCGCC 4 2.375 ± 1.563 8 Present
6(5) CTAACC 1 1.5 11 Absent
6(6) GTTGGC 1 - 12 Absent
6(7) TTGGCA 1 - 12 Absent
6(8) TGGCAT 1 - 12 Absent
6(9) GGCATG 1 - 12 Absent
6(10) GCATGG 1 - 12 Absent
6(11) CATGGC 1 - 12 Absent
6(12) ATGGCA 1 - 12 Absent
6(13) GGCAAC 1 - 12 Absent
6(14) TGGCAA 2 - 12 Absent
6(15) CCAATC 2 - 14 Absent
6(16) TACCCC 1 - 15 Absent
6(17) ACCCCC 1 - 15 Absent
6(18) CCCCCC 1 - 15 Absent
6(19) CCCCCT 1 - 15 Absent
6(20) TTACCC 3 - 15 Absent
6(21) CCCCTT 2 - 15 Absent
6(22) TTTCGT 1 - 16 Absent
6(23) TTCGTT 1 - 16 Absent
6(24) TCGTTG 1 - 16 Absent
6(25) CGTTGG 1 - 16 Absent
6(26) GTTGGA 1 - 16 Absent
6(27) TTGGAA 1 - 16 Absent
6(28) TGGAAG 1 - 16 Absent
6(29) GGAAGC 1 - 16 Absent
6(30) GAAGCG 1 - 16 Absent
6(31) AAGCGG 1 - 16 Absent
6(32) AGCGGG 1 - 16 Absent
6(33) GCGGGA 1 - 16 Absent
6(34) TATCCA 5 - 18 & 19 Absent
6(35) ATCCAC 5 - 18 & 19 Absent
6(36) TACCGA 1 - 21 Absent
6(37) ACCGAC 1 - 21 Absent
6(38) CCGACA 1 - 21 Absent
6(39) CGACAT 1 - 21 Absent
6(40) AGTGGT 1 - 22 Absent
6(41) GTGGTG 1 - 22 Absent
6(42) GAGTGG 2 - 22 Absent
6(43) TGGTGA 2 - 22 Absent
6(44) TGAGTC 1 - 23 Absent
6(45) GAGTCA 1 - 23 Absent
6(46) TTCTCT 1 - 25 Absent
6(47) TACGTA 1 - 26 Absent
6(48) GTGTCC 1 - 27 Absent
6(49) ACGTGT 3 - 27 Absent
6(50) CGTGTC 2 - 27 Absent
6(51) CGATCG 1 - 28 Absent
6(52) GATCGA 1 - 28 Absent
6(53) TCGATC 1 - 28 Absent
6(54) ATCGAT 2 - 28 Absent
6(55) TGACGT 6 - 32 Absent
6(56) GACGTA 1 - 32 Absent
6(57) ACGTAT 1 - 32 Absent
6(58) GAGGCC 1 - 33 Absent
6(59) AGGCCA 1 - 33 Absent
6(60) GGCCAT 1 - 33 Absent
6(61) GCCATC 1 - 33 Absent
6(62) CCATCT 2 - 33 Absent
6(62) ATGTGA 2 2.222 ± 1.592 137 Absent
6(63) TGTGAA 2 2.10 ± 1.35 137 Absent
6(64,4096) TGAAAT 3 2.36 ± 1.32 137 Absent
7(1) TATAAAA 1 1.0 ± 0.0 1 Present
7(2) AGCCGCC 1 1.0 ± 0.0 8 Present
7(3) GTTGGCA 1 1.0 ± 0.0 12 Absent
7(4) TTGGCAT 1 1.0 ± 0.0 12 Absent
7(5) TGGCATG 1 1.0 ± 0.0 12 Absent
7(6) GGCATGG 1 1.0 ± 0.0 12 Absent
7(7) GCATGGC 1 1.0 ± 0.0 12 Absent
7(8) CATGGCA 1 1.0 ± 0.0 12 Absent
7(9) ATGGCAA 1 1.0 ± 0.0 12 Absent
7(10) TGGCAAC 1 1.0 ± 0.0 12 Absent
7(11) TTACCCC 1 1.0 ± 0.0 15 Absent
7(12) TACCCCC 1 1.0 ± 0.0 15 Absent
7(13) ACCCCCC 1 1.0 ± 0.0 15 Absent
7(14) CCCCCCC 1 1.0 ± 0.0 15 Absent
7(15) CCCCCCT 1 1.0 ± 0.0 15 Absent
7(16) CCCCCTT 1 1.0 ± 0.0 15 Absent
7(17) TTTCGTT 1 1.0 ± 0.0 16 Absent
7(18) TTCGTTG 1 1.0 ± 0.0 16 Absent
7(19) TCGTTGG 1 1.0 ± 0.0 16 Absent
7(20) CGTTGGA 1 1.0 ± 0.0 16 Absent
7(21) GTTGGAA 1 1.0 ± 0.0 16 Absent
7(22) TTGGAAG 1 1.0 ± 0.0 16 Absent
7(23) TGGAAGC 1 1.0 ± 0.0 16 Absent
7(24) GGAAGCG 1 1.0 ± 0.0 16 Absent
7(25) GAAGCGG 1 1.0 ± 0.0 16 Absent
7(26) AAGCGGG 1 1.0 ± 0.0 16 Absent
7(27) AGCGGGA 1 1.0 ± 0.0 16 Absent
7(28) TATCCAC 1 1.0 ± 0.0 18 & 19 Absent
7(29) TACCGAC 1 - 21 Absent
7(30) ACCGACA 1 - 21 Absent
7(31) CCGACAT 1 - 21 Absent
7(32) GAGTGGT 1 - 22 Absent
7(33) AGTGGTG 1 - 22 Absent
7(34) GTGGTGA 1 - 22 Absent
7(35) TGAGTCA 1 - 23 Absent
7(36) ACGTGTC 1 - 27 Absent
7(37) CGTGTCC 1 - 27 Absent
7(37) CGATCGA 1 - 28 Absent
7(38) GATCGAT 1 - 28 Absent
7(39) ATCGATC 1 - 28 Absent
7(40) TGACGTA 1 - 32 Absent
7(41) GACGTAT 1 - 32 Absent
7(42) GAGGCCA 1 1.0 33 Absent
7(43) AGGCCAT 1 1.0 33 Absent
7(44) GGCCATC 1 1.0 33 Absent
7(45) GCCATCT 1 1.0 33 Absent
7(46) ATGTGAA 2 - 137 Absent
7(47) TGTGAAA 2 - 137 Absent
7(48) GTGAAAT 2 - 137 Absent
7(49) TTCACAT 1 - 138 Present
7(50,16384) TCACATG 1 - 138 Present
8(1) GTTGGCAT 1 - 12 Absent
8(2) TTGGCATG 1 - 12 Absent
8(3) TGGCATGG 1 - 12 Absent
8(4) GGCATGGC 1 - 12 Absent
8(5) GCATGGCA 1 - 12 Absent
8(6) CATGGCAA 1 - 12 Absent
8(7) ATGGCAAC 1 - 12 Absent
8(8) TTACCCCC 1 1.0 15 Absent
8(9) TACCCCCC 1 1.0 15 Absent
8(10) ACCCCCCC 1 1.0 15 Absent
8(11) CCCCCCCT 1 1.0 15 Absent
8(12) CCCCCCTT 1 1.0 15 Absent
8(13) TTTCGTTG 1 1.0 16 Absent
8(14) TTCGTTGG 1 1.0 16 Absent
8(15) TCGTTGGA 1 1.0 16 Absent
8(16) CGTTGGAA 1 1.0 16 Absent
8(17) GTTGGAAG 1 1.0 16 Absent
8(18) TTGGAAGC 1 1.0 16 Absent
8(19) TGGAAGCG 1 1.0 16 Absent
8(20) GGAAGCGG 1 1.0 16 Absent
8(21) GAAGCGGG 1 1.0 16 Absent
8(22) AAGCGGGA 1 1.0 16 Absent
8(23) TACCGACA 1 - 21 Absent
8(24) ACCGACAT 1 - 21 Absent
8(25) GAGTGGTG 1 - 22 Absent
8(26) AGTGGTGA 1 - 22 Absent
8(27) ACGTGTCC 1 - 27 Absent
8(28) CGATCGAT 1 - 28 Absent
8(29) GATCGATC 1 - 28 Absent
8(30) TGACGTAT 1 - 32 Absent
8(31) GAGGCCAT 1 1.0 33 Absent
8(32) AGGCCATC 1 1.0 33 Absent
8(33) GGCCATCT 1 1.0 33 Absent
8(34) ATGTGAAA 2 - 137 Absent
8(35) TGTGAAAT 2 - 137 Absent
8(36,65536) TTCACATG 1 1.2 ± 0.32 138 Present
9(1) CATGGCAAC 1 1.0 12 Absent
9(2) GCATGGCAA 1 1.0 12 Absent
9(3) GGCATGGCA 1 1.0 12 Absent
9(4) TGGCATGGC 1 1.0 12 Absent
9(5) TTGGCATGG 1 1.0 12 Absent
9(6) GTTGGCATG 1 1.0 12 Absent
9(7) TTACCCCCC 1 1.0 15 Absent
9(8) TACCCCCCC 1 1.0 15 Absent
9(9) ACCCCCCCT 1 1.0 15 Absent
9(10) CCCCCCCTT 1 1.0 15 Absent
9(11) TTTCGTTGG 1 1.0 16 Absent
9(12) TTCGTTGGA 1 1.0 16 Absent
9(13) TCGTTGGAA 1 1.0 16 Absent
9(14) CGTTGGAAG 1 1.0 16 Absent
9(15) GTTGGAAGC 1 1.0 16 Absent
9(16) TTGGAAGCG 1 1.0 16 Absent
9(17) TGGAAGCGG 1 1.0 16 Absent
9(18) GGAAGCGGG 1 1.0 16 Absent
9(19) GAAGCGGGA 1 1.0 16 Absent
9(20) TACCGACAT 1 - 21 Absent
9(21) GAGTGGTGA 1 - 22 Absent
9(22) CGATCGATC 1 - 28 Absent
9(23) ATGTGAAAT 2 1.14 ± 0.24 137 Absent
9(24) GAGGCCATC 1 1.0 33 Absent
9(25,262144) AGGCCATCT 1 1.0 33 Absent
10(1) GCATGGCAAC 1 1.0 12 Absent
10(2) GGCATGGCAA 1 1.0 12 Absent
10(3) TGGCATGGCA 1 1.0 12 Absent
10(4) TTGGCATGGC 1 1.0 12 Absent
10(5) GTTGGCATGG 1 1.0 12 Absent
10(6) TTACCCCCCC 1 1.0 15 Absent
10(7) TACCCCCCCT 1 1.0 15 Absent
10(8) ACCCCCCCTT 1 1.0 15 Absent
10(9) TTTCGTTGGA 1 1.0 16 Absent
10(10) TTCGTTGGAA 1 1.0 16 Absent
10(11) TCGTTGGAAG 1 1.0 16 Absent
10(12) CGTTGGAAGC 1 1.0 16 Absent
10(13) GTTGGAAGCG 1 1.0 16 Absent
10(14) TTGGAAGCGG 1 1.0 16 Absent
10(15) TGGAAGCGGG 1 1.0 16 Absent
10(16) GGAAGCGGGA 1 1.0 16 Absent
10(17,1048576) GAGGCCATCT 1 1.0 33 Absent
11(1) GGCATGGCAAC 1 1.0 12 Absent
11(2) TGGCATGGCAA 1 1.0 12 Absent
11(3) TTGGCATGGCA 1 1.0 12 Absent
11(4) GTTGGCATGGC 1 1.0 12 Absent
11(5) TTACCCCCCCT 1 1.0 15 Absent
11(6) TACCCCCCCTT 1 1.0 15 Absent
11(7) TTTCGTTGGAA 1 1.0 16 Absent
11(8) TTCGTTGGAAG 1 1.0 16 Absent
11(9) TCGTTGGAAGC 1 1.0 16 Absent
11(10) CGTTGGAAGCG 1 1.0 16 Absent
11(11) GTTGGAAGCGG 1 1.0 16 Absent
11(12) TTGGAAGCGGG 1 1.0 16 Absent
11(13,4194304) TGGAAGCGGGA 1 1.0 16 Absent
12(1) TGGCATGGCAAC 1 1.0 12 Absent
12(2) TTGGCATGGCAA 1 1.0 12 Absent
12(3) GTTGGCATGGCA 1 1.0 12 Absent
12(4) TTACCCCCCCTT 1 1.0 15 Absent
12(5) TTTCGTTGGAAG 1 1.0 16 Absent
12(6) TTCGTTGGAAGC 1 1.0 16 Absent
12(7) TCGTTGGAAGCG 1 1.0 16 Absent
12(8) CGTTGGAAGCGG 1 1.0 16 Absent
12(9) GTTGGAAGCGGG 1 1.0 16 Absent
12(10,16777216) TTGGAAGCGGGA 1 1.0 16 Absent
13(1) TTGGCATGGCAAC 1 1.0 12 Absent
13(2) GTTGGCATGGCAA 1 1.0 12 Absent
13(3) TTTCGTTGGAAGC 1 1.0 16 Absent
13(4) TTCGTTGGAAGCG 1 1.0 16 Absent
13(5) TCGTTGGAAGCGG 1 1.0 16 Absent
13(6) CGTTGGAAGCGGG 1 1.0 16 Absent
13(7,67108864) GTTGGAAGCGGGA 1 1.0 16 Absent
14(1) GTTGGCATGGCAAC 1 1.0 12 Absent
14(2) TTTCGTTGGAAGCG 1 1.0 16 Absent
14(3) TTCGTTGGAAGCGG 1 1.0 16 Absent
14(4) TCGTTGGAAGCGGG 1 1.0 16 Absent
14(5,268435456) CGTTGGAAGCGGGA 1 1.0 16 Absent
15(1) TTTCGTTGGAAGCGG 1 1.0 16 Absent
15(2) TTCGTTGGAAGCGGG 1 1.0 16 Absent
15(3,1073741824) TCGTTGGAAGCGGGA 1 1.0 16 Absent
16(1) TTCGTTGGAAGCGGGA 1 1.0 16 Absent
16(2,4294967296) TTTCGTTGGAAGCGGG 1 1.0 16 Absent
17(1,17179869184) TTTCGTTGGAAGCGGGA 1 1.0 16 Absent

Averages per Orders

Number of non-degenerate nucleotides versus number of response elements
Number of nucleotides (Totals) Letters of last Order nucleotides Number of last response elements Average ± average deviation Last Order of list
1(4) C 300 291.5 ± 6 5
2(16) GA 106 97.4 ± 15.5 16
3(38) CAC 34 29.9 ± 12.2 18
4(33) AAAT 8 7.64 ± 2.63 137
5(28) ATGTG 3 3.33 ± 1.55 137
6(24) TGAAAT 3 2.36 ± 1.32 137
7(21) TCACATG 1 1.23 ± 0.35 138
8(26) TTCACATG 1 1.2 ± 0.32 138
9(20) ATGTGAAAT 2 1.14 ± 0.24 137
10(16) GGAAGCGGGA 1 1.0 16
11(13) TGGAAGCGGGA 1 1.0 16
12(10) TTGGAAGCGGGA 1 1.0 16
13(7) GTTGGAAGCGGGA 1 1.0 16
14(5) GTTGGCATGGCAAC 1 1.0 16
15(3) TCGTTGGAAGCGGGA 1 1.0 16
16(2) TTTCGTTGGAAGCGGG 1 1.0 16
17(1) TTTCGTTGGAAGCGGGA 1 1.0 16
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