Influenza causes

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Editor-In-Chief: C. Michael Gibson, M.S., M.D. [2]

Taxonomy

Viruses; ssRNA viruses; ssRNA negative-strand viruses; Orthomyxoviridae; Influenzavirus A; Influenza A virus
Viruses; ssRNA viruses; ssRNA negative-strand viruses; Orthomyxoviridae; Influenzavirus B; Influenza B virus
Viruses; ssRNA viruses; ssRNA negative-strand viruses; Orthomyxoviridae; Influenzavirus C; Influenza C virus

• Orthomyxoviridae

• Influenzavirus A

• Influenza A virus

• (many subtypes)

• Influenzavirus B

• Influenza B virus

• (many subtypes)

• Influenzavirus C

• Influenza C virus

• (many subtypes)

• The international naming convention for influenza viruses uses the following components to name the virus:

• The antigenic type (e.g., A, B, C)
• The host of origin (e.g., swine, equine, chicken, etc. For human-origin viruses, no host of origin designation is given.)
• Geographical origin (e.g., Denver, Taiwan, etc.)
• Strain number (e.g., 15, 7, etc.)
• Year of isolation (e.g., 57, 2009, etc.)
• For influenza A viruses, the hemagglutinin and neuraminidase antigen description in parentheses (e.g., (H1N1), (H5N1)

Influenza A

• Influenza A viruses are divided into subtypes based on two proteins on the surface of the virus: the hemagglutinin (H) and the neuraminidase (N). There are 18 different hemagglutinin subtypes and 11 different neuraminidase subtypes. (H1 through H18 and N1 through N11 respectively.)
• Influenza A viruses can be further broken down into different strains. Current subtypes of influenza A viruses found in people are influenza A (H1N1) and influenza A (H3N2) viruses. In the spring of 2009, a new influenza A (H1N1) virus (CDC 2009 H1N1 Flu website) emerged to cause illness in people. This virus was very different from the human influenza A (H1N1) viruses circulating at that time. The new virus caused the first influenza pandemic in more than 40 years. That virus (often called “2009 H1N1”) has now replaced the H1N1 virus that was previously circulating in humans.

Influenza B

• Influenza B viruses are not divided into subtypes, but can be further broken down into lineages and strains.
• Currently circulating influenza B viruses belong to one of two lineages: B/Yamagata and B/Victoria.

Structure

Image courtesy of CDC[1]

Tropism

• The viruses attach to cells within the nasal passages and throat in the respiratory tract.
• The influenza virus’s hemagglutinin (HA) surface proteins then bind to the sialic acid receptors on the surface of a human respiratory tract cell.
• The structure of the influenza virus’s HA surface proteins is designed to fit the sialic acid receptors of the human cell, like a key to a lock.
• Once the key enters the lock, the influenza virus is then able to enter and infect the cell. This marks the beginning of a flu infection

Natural Reservoir

Influenza A subtypes and the species in which they have been detected

Species	Hemagglutinin Subtypes	Neuraminidase Subtypes
Humans	H1, H2, H3, H5, H6, H7, H9, H10	N1, N2, N6, N7, N8, N9
Poultry	H1, H2, H3, H4, H5, H6, H7, H8, H9, H10, H11, H12, H13, H14, H15, H16	N1, N2, N3, N4, N5, N6, N7, N8, N9
Pigs	H1, H2, H3, H4, H5, H9	N1, N2
Bats	H17, H18	N10, N11
Adapted from CDC

• In nature, the flu virus is found in wild aquatic birds, such as ducks and shore birds.
• It has persisted in these birds for millions of years and does not typically harm them; but the frequently mutating flu viruses can readily jump the species barrier from wild birds to domesticated poultry and swine.
• Pigs can be infected by both bird (avian) flu and the form that infects humans.
• In a setting such as a farm where chickens, pigs, and humans live in close proximity, pigs act as an influenza virus mixing bowl.
• If a pig is infected with avian and human flu simultaneously, the two types of virus may exchange genes.
• Such a "reassorted" flu virus can sometimes spread from pigs to people.
• Depending on the combination of avian flu proteins that make it into the human population, the flu may be more or less severe.
• In 1997, for the first time, scientists found that a form of avian H5N1 flu skipped the pig step and infected humans directly.
• Alarmed health officials feared a worldwide epidemic (a pandemic), but fortunately, the virus could not pass from person to person and thus did not spark an epidemic.

Microscopic Pathology

• 
  Electron Micrograph Images of H7N9 Virus from China.
  Image obtained from CDC.
• 
  Produced by the National Institute of Allergy and Infectious Diseases (NIAID), this digitally-colorized transmission electron micrograph (TEM) depicts numbers of H1N1 influenza virus particles. Surface proteins located on the surface of the virus particles are shown in black.
  Image obtained from Public Health Image Library (PHIL).
• 
  This negatively-stained transmission electron micrograph (TEM) captured some of the ultrastructural details exhibited by the new influenza A (H7N9) virus.
  Image obtained from Public Health Image Library (PHIL).
• 
  This colorized transmission electron micrograph (TEM) revealed the presence of a number of Novel H1N1 virus virions in this tissue culture sample.
  Image obtained from Public Health Image Library (PHIL).
• 
  This negatively-stained transmission electron micrograph (TEM) revealed the presence of a number of Hong Kong flu virus virions, the H3N2 subtype of the influenza A virus. This virus is a Orthomyxoviridaevirus family member, and was responsible for the flu pandemic of 1968-1969, which infected an estimated 50,000,000 people in the United States, killing 33,000. Note the proteinaceous coat, or capsid, surrounding each virion, and the hemagglutinin-neuraminidase spikes, which differ in terms of their molecular make-up from strain to strain.
  Image obtained from Public Health Image Library (PHIL).