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'''Chromodomain-helicase-DNA-binding protein 1''' is an [[enzyme]] that in humans is encoded by the ''CHD1'' [[gene]].<ref name="pmid8460153">{{cite journal | vauthors = Delmas V, Stokes DG, Perry RP | title = A mammalian DNA-binding protein that contains a chromodomain and an SNF2/SWI2-like helicase domain | journal = Proc Natl Acad Sci U S A | volume = 90 | issue = 6 | pages = 2414–8 |date=Apr 1993 | pmid = 8460153 | pmc = 46097 | doi =10.1073/pnas.90.6.2414 }}</ref><ref name="pmid9326634">{{cite journal | vauthors = Woodage T, Basrai MA, Baxevanis AD, Hieter P, Collins FS | title = Characterization of the CHD family of proteins | journal = Proc Natl Acad Sci U S A | volume = 94 | issue = 21 | pages = 11472–7 |date=Nov 1997 | pmid = 9326634 | pmc = 23509 | doi =10.1073/pnas.94.21.11472 }}</ref><ref name="entrez">{{cite web | title = Entrez Gene: CHD1 chromodomain helicase DNA binding protein 1| url = https://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=1105| accessdate = }}</ref> | '''Chromodomain-helicase-DNA-binding protein 1''' is an [[enzyme]] that in humans is encoded by the ''CHD1'' [[gene]].<ref name="pmid8460153">{{cite journal | vauthors = Delmas V, Stokes DG, Perry RP | title = A mammalian DNA-binding protein that contains a chromodomain and an SNF2/SWI2-like helicase domain | journal = Proc Natl Acad Sci U S A | volume = 90 | issue = 6 | pages = 2414–8 |date=Apr 1993 | pmid = 8460153 | pmc = 46097 | doi =10.1073/pnas.90.6.2414 | bibcode = 1993PNAS...90.2414D }}</ref><ref name="pmid9326634">{{cite journal | vauthors = Woodage T, Basrai MA, Baxevanis AD, Hieter P, Collins FS | title = Characterization of the CHD family of proteins | journal = Proc Natl Acad Sci U S A | volume = 94 | issue = 21 | pages = 11472–7 |date=Nov 1997 | pmid = 9326634 | pmc = 23509 | doi =10.1073/pnas.94.21.11472 | bibcode = 1997PNAS...9411472W }}</ref><ref name="entrez">{{cite web | title = Entrez Gene: CHD1 chromodomain helicase DNA binding protein 1| url = https://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=1105| accessdate = }}</ref> | ||
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*{{cite journal | vauthors=Bonaldo MF, Lennon G, Soares MB |title=Normalization and subtraction: two approaches to facilitate gene discovery |journal=Genome Res. |volume=6 |issue= 9 |pages= 791–806 |year= 1997 |pmid= 8889548 |doi=10.1101/gr.6.9.791 }} | *{{cite journal | vauthors=Bonaldo MF, Lennon G, Soares MB |title=Normalization and subtraction: two approaches to facilitate gene discovery |journal=Genome Res. |volume=6 |issue= 9 |pages= 791–806 |year= 1997 |pmid= 8889548 |doi=10.1101/gr.6.9.791 }} | ||
*{{cite journal | vauthors=Kelley DE, Stokes DG, Perry RP |title=CHD1 interacts with SSRP1 and depends on both its chromodomain and its ATPase/helicase-like domain for proper association with chromatin |journal=Chromosoma |volume=108 |issue= 1 |pages= 10–25 |year= 1999 |pmid= 10199952 |doi=10.1007/s004120050347 }} | *{{cite journal | vauthors=Kelley DE, Stokes DG, Perry RP |title=CHD1 interacts with SSRP1 and depends on both its chromodomain and its ATPase/helicase-like domain for proper association with chromatin |journal=Chromosoma |volume=108 |issue= 1 |pages= 10–25 |year= 1999 |pmid= 10199952 |doi=10.1007/s004120050347 }} | ||
*{{cite journal | vauthors=Strausberg RL, Feingold EA, Grouse LH |title=Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences |journal=Proc. Natl. Acad. Sci. U.S.A. |volume=99 |issue= 26 |pages= 16899–903 |year= 2003 |pmid= 12477932 |doi= 10.1073/pnas.242603899 | pmc=139241 |display-authors=etal}} | *{{cite journal | vauthors=Strausberg RL, Feingold EA, Grouse LH |title=Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences |journal=Proc. Natl. Acad. Sci. U.S.A. |volume=99 |issue= 26 |pages= 16899–903 |year= 2003 |pmid= 12477932 |doi= 10.1073/pnas.242603899 | pmc=139241 |display-authors=etal|bibcode=2002PNAS...9916899M }} | ||
*{{cite journal | vauthors=Salomon AR, Ficarro SB, Brill LM |title=Profiling of tyrosine phosphorylation pathways in human cells using mass spectrometry |journal=Proc. Natl. Acad. Sci. U.S.A. |volume=100 |issue= 2 |pages= 443–8 |year= 2003 |pmid= 12522270 |doi= 10.1073/pnas.2436191100 | pmc=141014 |display-authors=etal}} | *{{cite journal | vauthors=Salomon AR, Ficarro SB, Brill LM |title=Profiling of tyrosine phosphorylation pathways in human cells using mass spectrometry |journal=Proc. Natl. Acad. Sci. U.S.A. |volume=100 |issue= 2 |pages= 443–8 |year= 2003 |pmid= 12522270 |doi= 10.1073/pnas.2436191100 | pmc=141014 |display-authors=etal|bibcode=2003PNAS..100..443S }} | ||
*{{cite journal | vauthors=Tai HH, Geisterfer M, Bell JC |title=CHD1 associates with NCoR and histone deacetylase as well as with RNA splicing proteins |journal=Biochem. Biophys. Res. Commun. |volume=308 |issue= 1 |pages= 170–6 |year= 2003 |pmid= 12890497 |doi=10.1016/S0006-291X(03)01354-8 |display-authors=etal}} | *{{cite journal | vauthors=Tai HH, Geisterfer M, Bell JC |title=CHD1 associates with NCoR and histone deacetylase as well as with RNA splicing proteins |journal=Biochem. Biophys. Res. Commun. |volume=308 |issue= 1 |pages= 170–6 |year= 2003 |pmid= 12890497 |doi=10.1016/S0006-291X(03)01354-8 |display-authors=etal}} | ||
*{{cite journal | vauthors=Ota T, Suzuki Y, Nishikawa T |title=Complete sequencing and characterization of 21,243 full-length human cDNAs |journal=Nat. Genet. |volume=36 |issue= 1 |pages= 40–5 |year= 2004 |pmid= 14702039 |doi= 10.1038/ng1285 |display-authors=etal}} | *{{cite journal | vauthors=Ota T, Suzuki Y, Nishikawa T |title=Complete sequencing and characterization of 21,243 full-length human cDNAs |journal=Nat. Genet. |volume=36 |issue= 1 |pages= 40–5 |year= 2004 |pmid= 14702039 |doi= 10.1038/ng1285 |display-authors=etal}} | ||
*{{cite journal | vauthors=Brandenberger R, Wei H, Zhang S |title=Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation |journal=Nat. Biotechnol. |volume=22 |issue= 6 |pages= 707–16 |year= 2005 |pmid= 15146197 |doi= 10.1038/nbt971 |display-authors=etal}} | *{{cite journal | vauthors=Brandenberger R, Wei H, Zhang S |title=Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation |journal=Nat. Biotechnol. |volume=22 |issue= 6 |pages= 707–16 |year= 2005 |pmid= 15146197 |doi= 10.1038/nbt971 |display-authors=etal}} | ||
*{{cite journal | vauthors=Sims RJ, Chen CF, Santos-Rosa H |title=HUMAN BUT NOT YEAST CHD1 BINDS DIRECTLY AND SELECTIVELY TO HISTONE H3 METHYLATED AT LYSINE 4 VIA ITS TANDEM CHROMODOMAINS |journal=J. Biol. Chem. |volume=280 |issue= 51 |pages= 41789–92 |year= 2006 |pmid= 16263726 |doi= 10.1074/jbc.C500395200 | pmc=1421377 |display-authors=etal}} | *{{cite journal | vauthors=Sims RJ, Chen CF, Santos-Rosa H |title=HUMAN BUT NOT YEAST CHD1 BINDS DIRECTLY AND SELECTIVELY TO HISTONE H3 METHYLATED AT LYSINE 4 VIA ITS TANDEM CHROMODOMAINS |journal=J. Biol. Chem. |volume=280 |issue= 51 |pages= 41789–92 |year= 2006 |pmid= 16263726 |doi= 10.1074/jbc.C500395200 | pmc=1421377 |display-authors=etal}} | ||
*{{cite journal | vauthors=Flanagan JF, Mi LZ, Chruszcz M |title=Double chromodomains cooperate to recognize the methylated histone H3 tail |journal=Nature |volume=438 |issue= 7071 |pages= 1181–5 |year= 2006 |pmid= 16372014 |doi= 10.1038/nature04290 |display-authors=etal}} | *{{cite journal | vauthors=Flanagan JF, Mi LZ, Chruszcz M |title=Double chromodomains cooperate to recognize the methylated histone H3 tail |journal=Nature |volume=438 |issue= 7071 |pages= 1181–5 |year= 2006 |pmid= 16372014 |doi= 10.1038/nature04290 |display-authors=etal|bibcode=2005Natur.438.1181F }} | ||
*{{cite journal | vauthors=Olsen JV, Blagoev B, Gnad F |title=Global, in vivo, and site-specific phosphorylation dynamics in signaling networks |journal=Cell |volume=127 |issue= 3 |pages= 635–48 |year= 2006 |pmid= 17081983 |doi= 10.1016/j.cell.2006.09.026 |display-authors=etal}} | *{{cite journal | vauthors=Olsen JV, Blagoev B, Gnad F |title=Global, in vivo, and site-specific phosphorylation dynamics in signaling networks |journal=Cell |volume=127 |issue= 3 |pages= 635–48 |year= 2006 |pmid= 17081983 |doi= 10.1016/j.cell.2006.09.026 |display-authors=etal}} | ||
*{{cite journal | vauthors=Okuda M, Horikoshi M, Nishimura Y |title=Structural polymorphism of chromodomains in Chd1 |journal=J. Mol. Biol. |volume=365 |issue= 4 |pages= 1047–62 |year= 2007 |pmid= 17098252 |doi= 10.1016/j.jmb.2006.10.039 }} | *{{cite journal | vauthors=Okuda M, Horikoshi M, Nishimura Y |title=Structural polymorphism of chromodomains in Chd1 |journal=J. Mol. Biol. |volume=365 |issue= 4 |pages= 1047–62 |year= 2007 |pmid= 17098252 |doi= 10.1016/j.jmb.2006.10.039 }} | ||
Latest revision as of 01:10, 23 June 2018
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Chromodomain-helicase-DNA-binding protein 1 is an enzyme that in humans is encoded by the CHD1 gene.[1][2][3]
The CHD family of proteins is characterized by the presence of chromo (chromatin organization modifier) domains and SNF2-related helicase/ATPase domains. CHD genes alter gene expression possibly by modification of chromatin structure thus altering access of the transcriptional apparatus to its chromosomal DNA template.[3]
Interactions
CHD1 has been shown to interact with Nuclear receptor co-repressor 1.[4]
References
- ↑ Delmas V, Stokes DG, Perry RP (Apr 1993). "A mammalian DNA-binding protein that contains a chromodomain and an SNF2/SWI2-like helicase domain". Proc Natl Acad Sci U S A. 90 (6): 2414–8. Bibcode:1993PNAS...90.2414D. doi:10.1073/pnas.90.6.2414. PMC 46097. PMID 8460153.
- ↑ Woodage T, Basrai MA, Baxevanis AD, Hieter P, Collins FS (Nov 1997). "Characterization of the CHD family of proteins". Proc Natl Acad Sci U S A. 94 (21): 11472–7. Bibcode:1997PNAS...9411472W. doi:10.1073/pnas.94.21.11472. PMC 23509. PMID 9326634.
- ↑ 3.0 3.1 "Entrez Gene: CHD1 chromodomain helicase DNA binding protein 1".
- ↑ Tai, Helen H; Geisterfer Margit; Bell John C; Moniwa Mariko; Davie James R; Boucher Lorrie; McBurney Michael W (Aug 2003). "CHD1 associates with NCoR and histone deacetylase as well as with RNA splicing proteins". Biochem. Biophys. Res. Commun. United States. 308 (1): 170–6. doi:10.1016/S0006-291X(03)01354-8. ISSN 0006-291X. PMID 12890497.
External links
- Human CHD1 genome location and CHD1 gene details page in the UCSC Genome Browser.
Further reading
- Stokes DG, Perry RP (1995). "DNA-binding and chromatin localization properties of CHD1". Mol. Cell. Biol. 15 (5): 2745–53. PMC 230505. PMID 7739555.
- Bonaldo MF, Lennon G, Soares MB (1997). "Normalization and subtraction: two approaches to facilitate gene discovery". Genome Res. 6 (9): 791–806. doi:10.1101/gr.6.9.791. PMID 8889548.
- Kelley DE, Stokes DG, Perry RP (1999). "CHD1 interacts with SSRP1 and depends on both its chromodomain and its ATPase/helicase-like domain for proper association with chromatin". Chromosoma. 108 (1): 10–25. doi:10.1007/s004120050347. PMID 10199952.
- Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. Bibcode:2002PNAS...9916899M. doi:10.1073/pnas.242603899. PMC 139241. PMID 12477932.
- Salomon AR, Ficarro SB, Brill LM, et al. (2003). "Profiling of tyrosine phosphorylation pathways in human cells using mass spectrometry". Proc. Natl. Acad. Sci. U.S.A. 100 (2): 443–8. Bibcode:2003PNAS..100..443S. doi:10.1073/pnas.2436191100. PMC 141014. PMID 12522270.
- Tai HH, Geisterfer M, Bell JC, et al. (2003). "CHD1 associates with NCoR and histone deacetylase as well as with RNA splicing proteins". Biochem. Biophys. Res. Commun. 308 (1): 170–6. doi:10.1016/S0006-291X(03)01354-8. PMID 12890497.
- Ota T, Suzuki Y, Nishikawa T, et al. (2004). "Complete sequencing and characterization of 21,243 full-length human cDNAs". Nat. Genet. 36 (1): 40–5. doi:10.1038/ng1285. PMID 14702039.
- Brandenberger R, Wei H, Zhang S, et al. (2005). "Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation". Nat. Biotechnol. 22 (6): 707–16. doi:10.1038/nbt971. PMID 15146197.
- Sims RJ, Chen CF, Santos-Rosa H, et al. (2006). "HUMAN BUT NOT YEAST CHD1 BINDS DIRECTLY AND SELECTIVELY TO HISTONE H3 METHYLATED AT LYSINE 4 VIA ITS TANDEM CHROMODOMAINS". J. Biol. Chem. 280 (51): 41789–92. doi:10.1074/jbc.C500395200. PMC 1421377. PMID 16263726.
- Flanagan JF, Mi LZ, Chruszcz M, et al. (2006). "Double chromodomains cooperate to recognize the methylated histone H3 tail". Nature. 438 (7071): 1181–5. Bibcode:2005Natur.438.1181F. doi:10.1038/nature04290. PMID 16372014.
- Olsen JV, Blagoev B, Gnad F, et al. (2006). "Global, in vivo, and site-specific phosphorylation dynamics in signaling networks". Cell. 127 (3): 635–48. doi:10.1016/j.cell.2006.09.026. PMID 17081983.
- Okuda M, Horikoshi M, Nishimura Y (2007). "Structural polymorphism of chromodomains in Chd1". J. Mol. Biol. 365 (4): 1047–62. doi:10.1016/j.jmb.2006.10.039. PMID 17098252.
- Ewing RM, Chu P, Elisma F, et al. (2007). "Large-scale mapping of human protein–protein interactions by mass spectrometry". Mol. Syst. Biol. 3 (1): 89. doi:10.1038/msb4100134. PMC 1847948. PMID 17353931.
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