Small nuclear ribonucleoprotein polypeptide F: Difference between revisions
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{{ | '''Small nuclear ribonucleoprotein F''' is a [[protein]] that in humans is encoded by the ''SNRPF'' [[gene]].<ref name="pmid7744013">{{cite journal |vauthors=Hermann H, Fabrizio P, Raker VA, Foulaki K, Hornig H, Brahms H, Luhrmann R | title = snRNP Sm proteins share two evolutionarily conserved sequence motifs which are involved in Sm protein-protein interactions | journal = EMBO J | volume = 14 | issue = 9 | pages = 2076–88 |date=June 1995 | pmid = 7744013 | pmc = 398308 | doi = }}</ref><ref name="entrez">{{cite web | title = Entrez Gene: SNRPF small nuclear ribonucleoprotein polypeptide F| url = https://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=6636| accessdate = }}</ref> | ||
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==Interactions== | |||
Small nuclear ribonucleoprotein polypeptide F has been shown to [[Protein-protein interaction|interact]] with [[DDX20]],<ref name=pmid10601333>{{cite journal |last=Charroux |first=B |authorlink= |author2=Pellizzoni L |author3=Perkinson R A |author4=Shevchenko A |author5=Mann M |author6=Dreyfuss G |date=December 1999 |title=Gemin3: A Novel Dead Box Protein That Interacts with Smn, the Spinal Muscular Atrophy Gene Product, and Is a Component of Gems |journal=J. Cell Biol. |volume=147 |issue=6 |pages=1181–94 |publisher= |location = UNITED STATES| issn = 0021-9525| pmid = 10601333 | bibcode = | oclc =| id = | url = | language = | format = | accessdate = | laysummary = | laysource = | laydate = | quote = |doi=10.1083/jcb.147.6.1181 |pmc=2168095 }}</ref> [[Small nuclear ribonucleoprotein D2]]<ref name=pmid9417867>{{cite journal |last=Fury |first=M G |authorlink= |author2=Zhang W |author3=Christodoulopoulos I |author4=Zieve G W |date=November 1997 |title=Multiple protein: protein interactions between the snRNP common core proteins |journal=Exp. Cell Res. |volume=237 |issue=1 |pages=63–9 |publisher= |location = UNITED STATES| issn = 0014-4827| pmid = 9417867 |doi = 10.1006/excr.1997.3750 | bibcode = | oclc =| id = | url = | language = | format = | accessdate = | laysummary = | laysource = | laydate = | quote = }}</ref> and [[Small nuclear ribonucleoprotein polypeptide E]].<ref name=pmid9417867/> | |||
==References== | ==References== | ||
{{reflist | {{reflist}} | ||
==Further reading== | ==Further reading== | ||
{{refbegin | 2}} | {{refbegin | 2}} | ||
{{PBB_Further_reading | {{PBB_Further_reading | ||
| citations = | | citations = | ||
*{{cite journal | | *{{cite journal |vauthors=Sauterer RA, Goyal A, Zieve GW |title=Cytoplasmic assembly of small nuclear ribonucleoprotein particles from 6 S and 20 S RNA-free intermediates in L929 mouse fibroblasts |journal=J. Biol. Chem. |volume=265 |issue= 2 |pages= 1048–58 |year= 1990 |pmid= 1688550 |doi= }} | ||
*{{cite journal | | *{{cite journal |vauthors=Feeney RJ, Sauterer RA, Feeney JL, Zieve GW |title=Cytoplasmic assembly and nuclear accumulation of mature small nuclear ribonucleoprotein particles |journal=J. Biol. Chem. |volume=264 |issue= 10 |pages= 5776–83 |year= 1989 |pmid= 2522439 |doi= }} | ||
*{{cite journal | | *{{cite journal |vauthors=Woppmann A, Rinke J, Lührmann R |title=Direct cross-linking of snRNP proteins F and 70K to snRNAs by ultra-violet radiation in situ |journal=Nucleic Acids Res. |volume=16 |issue= 23 |pages= 10985–1004 |year= 1989 |pmid= 2974540 |doi=10.1093/nar/16.23.10985 | pmc=338992 }} | ||
*{{cite journal | | *{{cite journal |vauthors=Bonaldo MF, Lennon G, Soares MB |title=Normalization and subtraction: two approaches to facilitate gene discovery |journal=Genome Res. |volume=6 |issue= 9 |pages= 791–806 |year= 1997 |pmid= 8889548 |doi=10.1101/gr.6.9.791 }} | ||
*{{cite journal | | *{{cite journal |vauthors=Plessel G, Lührmann R, Kastner B |title=Electron microscopy of assembly intermediates of the snRNP core: morphological similarities between the RNA-free (E.F.G) protein heteromer and the intact snRNP core |journal=J. Mol. Biol. |volume=265 |issue= 2 |pages= 87–94 |year= 1997 |pmid= 9020971 |doi= 10.1006/jmbi.1996.0713 }} | ||
*{{cite journal | | *{{cite journal |vauthors=Fury MG, Zhang W, Christodoulopoulos I, Zieve GW |title=Multiple protein: protein interactions between the snRNP common core proteins |journal=Exp. Cell Res. |volume=237 |issue= 1 |pages= 63–9 |year= 1998 |pmid= 9417867 |doi= 10.1006/excr.1997.3750 }} | ||
*{{cite journal | *{{cite journal |vauthors=Kambach C, Walke S, Young R, etal |title=Crystal structures of two Sm protein complexes and their implications for the assembly of the spliceosomal snRNPs |journal=Cell |volume=96 |issue= 3 |pages= 375–87 |year= 1999 |pmid= 10025403 |doi=10.1016/S0092-8674(00)80550-4 }} | ||
*{{cite journal | | *{{cite journal |vauthors=Bühler D, Raker V, Lührmann R, Fischer U |title=Essential role for the tudor domain of SMN in spliceosomal U snRNP assembly: implications for spinal muscular atrophy |journal=Hum. Mol. Genet. |volume=8 |issue= 13 |pages= 2351–7 |year= 2000 |pmid= 10556282 |doi=10.1093/hmg/8.13.2351 }} | ||
*{{cite journal | *{{cite journal |vauthors=Charroux B, Pellizzoni L, Perkinson RA, etal |title=Gemin3: A Novel Dead Box Protein That Interacts with Smn, the Spinal Muscular Atrophy Gene Product, and Is a Component of Gems |journal=J. Cell Biol. |volume=147 |issue= 6 |pages= 1181–94 |year= 2000 |pmid= 10601333 |doi=10.1083/jcb.147.6.1181 | pmc=2168095 }} | ||
*{{cite journal | *{{cite journal |vauthors=Charroux B, Pellizzoni L, Perkinson RA, etal |title=Gemin4: A Novel Component of the Smn Complex That Is Found in Both Gems and Nucleoli |journal=J. Cell Biol. |volume=148 |issue= 6 |pages= 1177–86 |year= 2000 |pmid= 10725331 |doi=10.1083/jcb.148.6.1177 | pmc=2174312 }} | ||
*{{cite journal | | *{{cite journal |vauthors=Urlaub H, Raker VA, Kostka S, Lührmann R |title=Sm protein–Sm site RNA interactions within the inner ring of the spliceosomal snRNP core structure |journal=EMBO J. |volume=20 |issue= 1–2 |pages= 187–96 |year= 2001 |pmid= 11226169 |doi= 10.1093/emboj/20.1.187 | pmc=140196 }} | ||
*{{cite journal | *{{cite journal |vauthors=Pellizzoni L, Baccon J, Rappsilber J, etal |title=Purification of native survival of motor neurons complexes and identification of Gemin6 as a novel component |journal=J. Biol. Chem. |volume=277 |issue= 9 |pages= 7540–5 |year= 2002 |pmid= 11748230 |doi= 10.1074/jbc.M110141200 }} | ||
*{{cite journal | *{{cite journal |vauthors=Friesen WJ, Wyce A, Paushkin S, etal |title=A novel WD repeat protein component of the methylosome binds Sm proteins |journal=J. Biol. Chem. |volume=277 |issue= 10 |pages= 8243–7 |year= 2002 |pmid= 11756452 |doi= 10.1074/jbc.M109984200 }} | ||
*{{cite journal | *{{cite journal |vauthors=Jurica MS, Licklider LJ, Gygi SR, etal |title=Purification and characterization of native spliceosomes suitable for three-dimensional structural analysis |journal=RNA |volume=8 |issue= 4 |pages= 426–39 |year= 2002 |pmid= 11991638 |doi=10.1017/S1355838202021088 | pmc=1370266 }} | ||
*{{cite journal | *{{cite journal |vauthors=Strausberg RL, Feingold EA, Grouse LH, etal |title=Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences |journal=Proc. Natl. Acad. Sci. U.S.A. |volume=99 |issue= 26 |pages= 16899–903 |year= 2003 |pmid= 12477932 |doi= 10.1073/pnas.242603899 | pmc=139241 |bibcode=2002PNAS...9916899M }} | ||
*{{cite journal | *{{cite journal |vauthors=Will CL, Schneider C, Hossbach M, etal |title=The human 18S U11/U12 snRNP contains a set of novel proteins not found in the U2-dependent spliceosome |journal=RNA |volume=10 |issue= 6 |pages= 929–41 |year= 2004 |pmid= 15146077 |doi=10.1261/rna.7320604 | pmc=1370585 }} | ||
*{{cite journal | | *{{cite journal |vauthors=Lehner B, Sanderson CM |title=A Protein Interaction Framework for Human mRNA Degradation |journal=Genome Res. |volume=14 |issue= 7 |pages= 1315–23 |year= 2004 |pmid= 15231747 |doi= 10.1101/gr.2122004 | pmc=442147 }} | ||
*{{cite journal | *{{cite journal |vauthors=Gerhard DS, Wagner L, Feingold EA, etal |title=The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC) |journal=Genome Res. |volume=14 |issue= 10B |pages= 2121–7 |year= 2004 |pmid= 15489334 |doi= 10.1101/gr.2596504 | pmc=528928 }} | ||
*{{cite journal |vauthors=Ma Y, Dostie J, Dreyfuss G, Van Duyne GD |title=The Gemin6-Gemin7 heterodimer from the survival of motor neurons complex has an Sm protein-like structure |journal=Structure |volume=13 |issue= 6 |pages= 883–92 |year= 2005 |pmid= 15939020 |doi= 10.1016/j.str.2005.03.014 }} | |||
*{{cite journal | | |||
}} | }} | ||
{{refend}} | {{refend}} | ||
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{{Ribonucleoproteins}} | |||
{{gene-12-stub}} | |||
Latest revision as of 07:09, 26 June 2018
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| External IDs | GeneCards: [1] | ||||||
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| Species | Human | Mouse | |||||
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| Location (UCSC) | n/a | n/a | |||||
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Small nuclear ribonucleoprotein F is a protein that in humans is encoded by the SNRPF gene.[1][2]
Interactions
Small nuclear ribonucleoprotein polypeptide F has been shown to interact with DDX20,[3] Small nuclear ribonucleoprotein D2[4] and Small nuclear ribonucleoprotein polypeptide E.[4]
References
- ↑ Hermann H, Fabrizio P, Raker VA, Foulaki K, Hornig H, Brahms H, Luhrmann R (June 1995). "snRNP Sm proteins share two evolutionarily conserved sequence motifs which are involved in Sm protein-protein interactions". EMBO J. 14 (9): 2076–88. PMC 398308. PMID 7744013.
- ↑ "Entrez Gene: SNRPF small nuclear ribonucleoprotein polypeptide F".
- ↑ Charroux, B; Pellizzoni L; Perkinson R A; Shevchenko A; Mann M; Dreyfuss G (December 1999). "Gemin3: A Novel Dead Box Protein That Interacts with Smn, the Spinal Muscular Atrophy Gene Product, and Is a Component of Gems". J. Cell Biol. UNITED STATES. 147 (6): 1181–94. doi:10.1083/jcb.147.6.1181. ISSN 0021-9525. PMC 2168095. PMID 10601333.
- ↑ 4.0 4.1 Fury, M G; Zhang W; Christodoulopoulos I; Zieve G W (November 1997). "Multiple protein: protein interactions between the snRNP common core proteins". Exp. Cell Res. UNITED STATES. 237 (1): 63–9. doi:10.1006/excr.1997.3750. ISSN 0014-4827. PMID 9417867.
Further reading
- Sauterer RA, Goyal A, Zieve GW (1990). "Cytoplasmic assembly of small nuclear ribonucleoprotein particles from 6 S and 20 S RNA-free intermediates in L929 mouse fibroblasts". J. Biol. Chem. 265 (2): 1048–58. PMID 1688550.
- Feeney RJ, Sauterer RA, Feeney JL, Zieve GW (1989). "Cytoplasmic assembly and nuclear accumulation of mature small nuclear ribonucleoprotein particles". J. Biol. Chem. 264 (10): 5776–83. PMID 2522439.
- Woppmann A, Rinke J, Lührmann R (1989). "Direct cross-linking of snRNP proteins F and 70K to snRNAs by ultra-violet radiation in situ". Nucleic Acids Res. 16 (23): 10985–1004. doi:10.1093/nar/16.23.10985. PMC 338992. PMID 2974540.
- Bonaldo MF, Lennon G, Soares MB (1997). "Normalization and subtraction: two approaches to facilitate gene discovery". Genome Res. 6 (9): 791–806. doi:10.1101/gr.6.9.791. PMID 8889548.
- Plessel G, Lührmann R, Kastner B (1997). "Electron microscopy of assembly intermediates of the snRNP core: morphological similarities between the RNA-free (E.F.G) protein heteromer and the intact snRNP core". J. Mol. Biol. 265 (2): 87–94. doi:10.1006/jmbi.1996.0713. PMID 9020971.
- Fury MG, Zhang W, Christodoulopoulos I, Zieve GW (1998). "Multiple protein: protein interactions between the snRNP common core proteins". Exp. Cell Res. 237 (1): 63–9. doi:10.1006/excr.1997.3750. PMID 9417867.
- Kambach C, Walke S, Young R, et al. (1999). "Crystal structures of two Sm protein complexes and their implications for the assembly of the spliceosomal snRNPs". Cell. 96 (3): 375–87. doi:10.1016/S0092-8674(00)80550-4. PMID 10025403.
- Bühler D, Raker V, Lührmann R, Fischer U (2000). "Essential role for the tudor domain of SMN in spliceosomal U snRNP assembly: implications for spinal muscular atrophy". Hum. Mol. Genet. 8 (13): 2351–7. doi:10.1093/hmg/8.13.2351. PMID 10556282.
- Charroux B, Pellizzoni L, Perkinson RA, et al. (2000). "Gemin3: A Novel Dead Box Protein That Interacts with Smn, the Spinal Muscular Atrophy Gene Product, and Is a Component of Gems". J. Cell Biol. 147 (6): 1181–94. doi:10.1083/jcb.147.6.1181. PMC 2168095. PMID 10601333.
- Charroux B, Pellizzoni L, Perkinson RA, et al. (2000). "Gemin4: A Novel Component of the Smn Complex That Is Found in Both Gems and Nucleoli". J. Cell Biol. 148 (6): 1177–86. doi:10.1083/jcb.148.6.1177. PMC 2174312. PMID 10725331.
- Urlaub H, Raker VA, Kostka S, Lührmann R (2001). "Sm protein–Sm site RNA interactions within the inner ring of the spliceosomal snRNP core structure". EMBO J. 20 (1–2): 187–96. doi:10.1093/emboj/20.1.187. PMC 140196. PMID 11226169.
- Pellizzoni L, Baccon J, Rappsilber J, et al. (2002). "Purification of native survival of motor neurons complexes and identification of Gemin6 as a novel component". J. Biol. Chem. 277 (9): 7540–5. doi:10.1074/jbc.M110141200. PMID 11748230.
- Friesen WJ, Wyce A, Paushkin S, et al. (2002). "A novel WD repeat protein component of the methylosome binds Sm proteins". J. Biol. Chem. 277 (10): 8243–7. doi:10.1074/jbc.M109984200. PMID 11756452.
- Jurica MS, Licklider LJ, Gygi SR, et al. (2002). "Purification and characterization of native spliceosomes suitable for three-dimensional structural analysis". RNA. 8 (4): 426–39. doi:10.1017/S1355838202021088. PMC 1370266. PMID 11991638.
- Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. Bibcode:2002PNAS...9916899M. doi:10.1073/pnas.242603899. PMC 139241. PMID 12477932.
- Will CL, Schneider C, Hossbach M, et al. (2004). "The human 18S U11/U12 snRNP contains a set of novel proteins not found in the U2-dependent spliceosome". RNA. 10 (6): 929–41. doi:10.1261/rna.7320604. PMC 1370585. PMID 15146077.
- Lehner B, Sanderson CM (2004). "A Protein Interaction Framework for Human mRNA Degradation". Genome Res. 14 (7): 1315–23. doi:10.1101/gr.2122004. PMC 442147. PMID 15231747.
- Gerhard DS, Wagner L, Feingold EA, et al. (2004). "The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC)". Genome Res. 14 (10B): 2121–7. doi:10.1101/gr.2596504. PMC 528928. PMID 15489334.
- Ma Y, Dostie J, Dreyfuss G, Van Duyne GD (2005). "The Gemin6-Gemin7 heterodimer from the survival of motor neurons complex has an Sm protein-like structure". Structure. 13 (6): 883–92. doi:10.1016/j.str.2005.03.014. PMID 15939020.
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