PDLIM4: Difference between revisions

VALUE_ERROR (nil)
Identifiers
Aliases
External IDs	GeneCards: [1]
Orthologs
	n/a
	n/a
	n/a
	n/a
	n/a
	n/a
	n/a
	n/a
	n/a
	n/a
	Wikidata
View/Edit Human

Newer edit →

VisualWikitext

Revision as of 17:51, 7 September 2017

PDZ and LIM domain protein 4 is a protein that in humans is encoded by the PDLIM4 gene.^[1]^[2]

References

↑ Bashirova AA, Markelov ML, Shlykova TV, Levshenkova EV, Alibaeva RA, Frolova EI (Jun 1998). "The human RIL gene: mapping to human chromosome 5q31.1, genomic organization and alternative transcripts". Gene. 210 (2): 239–45. doi:10.1016/S0378-1119(98)00080-8. PMID 9573374.
↑ "Entrez Gene: PDLIM4 PDZ and LIM domain 4".

Maruyama K, Sugano S (1994). "Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides". Gene. 138 (1–2): 171–4. doi:10.1016/0378-1119(94)90802-8. PMID 8125298.
Suzuki Y, Yoshitomo-Nakagawa K, Maruyama K, et al. (1997). "Construction and characterization of a full length-enriched and a 5'-end-enriched cDNA library". Gene. 200 (1–2): 149–56. doi:10.1016/S0378-1119(97)00411-3. PMID 9373149.
Cuppen E, van Ham M, Wansink DG, et al. (2000). "The zyxin-related protein TRIP6 interacts with PDZ motifs in the adaptor protein RIL and the protein tyrosine phosphatase PTP-BL". Eur. J. Cell Biol. 79 (4): 283–93. doi:10.1078/S0171-9335(04)70031-X. PMID 10826496.
Walma T, Spronk CA, Tessari M, et al. (2002). "Structure, dynamics and binding characteristics of the second PDZ domain of PTP-BL". J. Mol. Biol. 316 (5): 1101–10. doi:10.1006/jmbi.2002.5402. PMID 11884147.
Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. doi:10.1073/pnas.242603899. PMC 139241. PMID 12477932.
Omasu F, Ezura Y, Kajita M, et al. (2003). "Association of genetic variation of the RIL gene, encoding a PDZ-LIM domain protein and localized in 5q31.1, with low bone mineral density in adult Japanese women". J. Hum. Genet. 48 (7): 342–5. doi:10.1007/s10038-003-0035-1. PMID 12908099.
Vallenius T, Scharm B, Vesikansa A, et al. (2004). "The PDZ-LIM protein RIL modulates actin stress fiber turnover and enhances the association of alpha-actinin with F-actin". Exp. Cell Res. 293 (1): 117–28. doi:10.1016/j.yexcr.2003.09.004. PMID 14729062.
Lehner B, Sanderson CM (2004). "A protein interaction framework for human mRNA degradation". Genome Res. 14 (7): 1315–23. doi:10.1101/gr.2122004. PMC 442147. PMID 15231747.
Gerhard DS, Wagner L, Feingold EA, et al. (2004). "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)". Genome Res. 14 (10B): 2121–7. doi:10.1101/gr.2596504. PMC 528928. PMID 15489334.
van den Berk LC, van Ham MA, te Lindert MM, et al. (2005). "The interaction of PTP-BL PDZ domains with RIL: an enigmatic role for the RIL LIM domain". Mol. Biol. Rep. 31 (4): 203–15. doi:10.1007/s11033-005-1407-8. PMID 15663004.
Rual JF, Venkatesan K, Hao T, et al. (2005). "Towards a proteome-scale map of the human protein-protein interaction network". Nature. 437 (7062): 1173–8. doi:10.1038/nature04209. PMID 16189514.
Schwartz LM, Woloshin S, Birkmeyer JD (2005). "How do elderly patients decide where to go for major surgery? Telephone interview survey". BMJ. 331 (7520): 821. doi:10.1136/bmj.38614.449016.DE. PMC 1246083. PMID 16192286.
Boumber YA, Kondo Y, Chen X, et al. (2007). "RIL, a LIM gene on 5q31, is silenced by methylation in cancer and sensitizes cancer cells to apoptosis". Cancer Res. 67 (5): 1997–2005. doi:10.1158/0008-5472.CAN-06-3093. PMID 17332327.

This article on a gene on human chromosome 5 is a stub. You can help Wikipedia by expanding it.

[pmid9573374-1] Bashirova AA, Markelov ML, Shlykova TV, Levshenkova EV, Alibaeva RA, Frolova EI (Jun 1998). "The human RIL gene: mapping to human chromosome 5q31.1, genomic organization and alternative transcripts". Gene. 210 (2): 239–45. doi:10.1016/S0378-1119(98)00080-8. PMID 9573374.

[entrez-2] "Entrez Gene: PDLIM4 PDZ and LIM domain 4".

[1]

[2]

@@ Line 1: / Line 1: @@
-<!-- The PBB_Controls template provides controls for Protein Box Bot, please see Template:PBB_Controls for details. -->
+{{Underlinked|date=June 2016}}
-{{PBB_Controls
+{{Infobox_gene}}
-| update_page = yes
+'''PDZ and LIM domain protein 4''' is a [[protein]] that in humans is encoded by the ''PDLIM4'' [[gene]].<ref name="pmid9573374">{{cite journal | vauthors = Bashirova AA, Markelov ML, Shlykova TV, Levshenkova EV, Alibaeva RA, Frolova EI | title = The human RIL gene: mapping to human chromosome 5q31.1, genomic organization and alternative transcripts | journal = Gene | volume = 210 | issue = 2 | pages = 239–45 |date=Jun 1998 | pmid = 9573374 | pmc =  | doi =10.1016/S0378-1119(98)00080-8  }}</ref><ref name="entrez">{{cite web | title = Entrez Gene: PDLIM4 PDZ and LIM domain 4| url = https://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=8572| accessdate = }}</ref>
-| require_manual_inspection = no
-| update_protein_box = yes
-| update_summary = yes
-| update_citations = yes
-}}
-<!-- The GNF_Protein_box is automatically maintained by Protein Box Bot.  See Template:PBB_Controls to Stop updates. -->
-{{GNF_Protein_box
- | image =
- | image_source =
- | PDB =
- | Name = PDZ and LIM domain 4
- | HGNCid = 16501
- | Symbol = PDLIM4
- | AltSymbols =; RIL
- | OMIM = 603422
- | ECnumber =
- | Homologene = 2735
- | MGIid = 1353470
- | GeneAtlas_image1 = PBB_GE_PDLIM4_211564_s_at_tn.png
- | GeneAtlas_image2 = PBB_GE_PDLIM4_214175_x_at_tn.png
- | GeneAtlas_image3 = PBB_GE_PDLIM4_218691_s_at_tn.png
- | Function = {{GNF_GO|id=GO:0005515 |text = protein binding}} {{GNF_GO|id=GO:0008270 |text = zinc ion binding}} {{GNF_GO|id=GO:0046872 |text = metal ion binding}}
- | Component =
- | Process =
- | Orthologs = {{GNF_Ortholog_box
-    | Hs_EntrezGene = 8572
-    | Hs_Ensembl = ENSG00000131435
-    | Hs_RefseqProtein = NP_003678
-    | Hs_RefseqmRNA = NM_003687
-    | Hs_GenLoc_db =
-    | Hs_GenLoc_chr = 5
-    | Hs_GenLoc_start = 131621263
-    | Hs_GenLoc_end = 131637046
-    | Hs_Uniprot = P50479
-    | Mm_EntrezGene = 30794
-    | Mm_Ensembl = ENSMUSG00000020388
-    | Mm_RefseqmRNA = NM_019417
-    | Mm_RefseqProtein = NP_062290
-    | Mm_GenLoc_db =
-    | Mm_GenLoc_chr = 11
-    | Mm_GenLoc_start = 53898355
-    | Mm_GenLoc_end = 53912391
-    | Mm_Uniprot = Q5SWV2
-  }}
-}}
-'''PDZ and LIM domain 4''', also known as '''PDLIM4''', is a human [[gene]].<ref name="entrez">{{cite web | title = Entrez Gene: PDLIM4 PDZ and LIM domain 4| url = http://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=8572| accessdate = }}</ref>
 <!-- The PBB_Summary template is automatically maintained by Protein Box Bot.  See Template:PBB_Controls to Stop updates. -->
@@ Line 57: / Line 10: @@
 ==References==
-{{reflist|2}}
+{{reflist}}
 ==Further reading==
 {{refbegin | 2}}
 {{PBB_Further_reading
 | citations =
-*{{cite journal  | author=Maruyama K, Sugano S |title=Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides. |journal=Gene |volume=138 |issue= 1-2 |pages= 171-4 |year= 1994 |pmid= 8125298 |doi=  }}
+*{{cite journal  | vauthors=Maruyama K, Sugano S |title=Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides. |journal=Gene |volume=138 |issue= 1–2 |pages= 171–4 |year= 1994 |pmid= 8125298 |doi=10.1016/0378-1119(94)90802-8  }}
-*{{cite journal  | author=Suzuki Y, Yoshitomo-Nakagawa K, Maruyama K, ''et al.'' |title=Construction and characterization of a full length-enriched and a 5'-end-enriched cDNA library. |journal=Gene |volume=200 |issue= 1-2 |pages= 149-56 |year= 1997 |pmid= 9373149 |doi=  }}
+*{{cite journal   |vauthors=Suzuki Y, Yoshitomo-Nakagawa K, Maruyama K, etal |title=Construction and characterization of a full length-enriched and a 5'-end-enriched cDNA library |journal=Gene |volume=200 |issue= 1–2 |pages= 149–56 |year= 1997 |pmid= 9373149 |doi=10.1016/S0378-1119(97)00411-3  }}
-*{{cite journal  | author=Bashirova AA, Markelov ML, Shlykova TV, ''et al.'' |title=The human RIL gene: mapping to human chromosome 5q31.1, genomic organization and alternative transcripts. |journal=Gene |volume=210 |issue= 2 |pages= 239-45 |year= 1998 |pmid= 9573374 |doi=  }}
+*{{cite journal   |vauthors=Cuppen E, van Ham M, Wansink DG, etal |title=The zyxin-related protein TRIP6 interacts with PDZ motifs in the adaptor protein RIL and the protein tyrosine phosphatase PTP-BL |journal=Eur. J. Cell Biol. |volume=79 |issue= 4 |pages= 283–93 |year= 2000 |pmid= 10826496 |doi=10.1078/S0171-9335(04)70031-X  }}
-*{{cite journal  | author=Cuppen E, van Ham M, Wansink DG, ''et al.'' |title=The zyxin-related protein TRIP6 interacts with PDZ motifs in the adaptor protein RIL and the protein tyrosine phosphatase PTP-BL. |journal=Eur. J. Cell Biol. |volume=79 |issue= 4 |pages= 283-93 |year= 2000 |pmid= 10826496 |doi=  }}
+*{{cite journal   |vauthors=Walma T, Spronk CA, Tessari M, etal |title=Structure, dynamics and binding characteristics of the second PDZ domain of PTP-BL |journal=J. Mol. Biol. |volume=316 |issue= 5 |pages= 1101–10 |year= 2002 |pmid= 11884147 |doi= 10.1006/jmbi.2002.5402 }}
-*{{cite journal  | author=Walma T, Spronk CA, Tessari M, ''et al.'' |title=Structure, dynamics and binding characteristics of the second PDZ domain of PTP-BL. |journal=J. Mol. Biol. |volume=316 |issue= 5 |pages= 1101-10 |year= 2002 |pmid= 11884147 |doi= 10.1006/jmbi.2002.5402 }}
+*{{cite journal   |vauthors=Strausberg RL, Feingold EA, Grouse LH, etal |title=Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences |journal=Proc. Natl. Acad. Sci. U.S.A. |volume=99 |issue= 26 |pages= 16899–903 |year= 2003 |pmid= 12477932 |doi= 10.1073/pnas.242603899  | pmc=139241 }}
-*{{cite journal  | author=Strausberg RL, Feingold EA, Grouse LH, ''et al.'' |title=Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. |journal=Proc. Natl. Acad. Sci. U.S.A. |volume=99 |issue= 26 |pages= 16899-903 |year= 2003 |pmid= 12477932 |doi= 10.1073/pnas.242603899 }}
+*{{cite journal   |vauthors=Omasu F, Ezura Y, Kajita M, etal |title=Association of genetic variation of the RIL gene, encoding a PDZ-LIM domain protein and localized in 5q31.1, with low bone mineral density in adult Japanese women |journal=J. Hum. Genet. |volume=48 |issue= 7 |pages= 342–5 |year= 2003 |pmid= 12908099 |doi= 10.1007/s10038-003-0035-1 }}
-*{{cite journal  | author=Omasu F, Ezura Y, Kajita M, ''et al.'' |title=Association of genetic variation of the RIL gene, encoding a PDZ-LIM domain protein and localized in 5q31.1, with low bone mineral density in adult Japanese women. |journal=J. Hum. Genet. |volume=48 |issue= 7 |pages= 342-5 |year= 2003 |pmid= 12908099 |doi= 10.1007/s10038-003-0035-1 }}
+*{{cite journal   |vauthors=Vallenius T, Scharm B, Vesikansa A, etal |title=The PDZ-LIM protein RIL modulates actin stress fiber turnover and enhances the association of alpha-actinin with F-actin |journal=Exp. Cell Res. |volume=293 |issue= 1 |pages= 117–28 |year= 2004 |pmid= 14729062 |doi=10.1016/j.yexcr.2003.09.004  }}
-*{{cite journal  | author=Vallenius T, Scharm B, Vesikansa A, ''et al.'' |title=The PDZ-LIM protein RIL modulates actin stress fiber turnover and enhances the association of alpha-actinin with F-actin. |journal=Exp. Cell Res. |volume=293 |issue= 1 |pages= 117-28 |year= 2004 |pmid= 14729062 |doi=  }}
+*{{cite journal  | vauthors=Lehner B, Sanderson CM |title=A protein interaction framework for human mRNA degradation |journal=Genome Res. |volume=14 |issue= 7 |pages= 1315–23 |year= 2004 |pmid= 15231747 |doi= 10.1101/gr.2122004  | pmc=442147 }}
-*{{cite journal  | author=Lehner B, Sanderson CM |title=A protein interaction framework for human mRNA degradation. |journal=Genome Res. |volume=14 |issue= 7 |pages= 1315-23 |year= 2004 |pmid= 15231747 |doi= 10.1101/gr.2122004 }}
+*{{cite journal   |vauthors=Gerhard DS, Wagner L, Feingold EA, etal |title=The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC) |journal=Genome Res. |volume=14 |issue= 10B |pages= 2121–7 |year= 2004 |pmid= 15489334 |doi= 10.1101/gr.2596504  | pmc=528928 }}
-*{{cite journal  | author=Gerhard DS, Wagner L, Feingold EA, ''et al.'' |title=The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). |journal=Genome Res. |volume=14 |issue= 10B |pages= 2121-7 |year= 2004 |pmid= 15489334 |doi= 10.1101/gr.2596504 }}
+*{{cite journal   |vauthors=van den Berk LC, van Ham MA, te Lindert MM, etal |title=The interaction of PTP-BL PDZ domains with RIL: an enigmatic role for the RIL LIM domain |journal=Mol. Biol. Rep. |volume=31 |issue= 4 |pages= 203–15 |year= 2005 |pmid= 15663004 |doi=10.1007/s11033-005-1407-8  }}
-*{{cite journal  | author=van den Berk LC, van Ham MA, te Lindert MM, ''et al.'' |title=The interaction of PTP-BL PDZ domains with RIL: an enigmatic role for the RIL LIM domain. |journal=Mol. Biol. Rep. |volume=31 |issue= 4 |pages= 203-15 |year= 2005 |pmid= 15663004 |doi=  }}
+*{{cite journal   |vauthors=Rual JF, Venkatesan K, Hao T, etal |title=Towards a proteome-scale map of the human protein-protein interaction network |journal=Nature |volume=437 |issue= 7062 |pages= 1173–8 |year= 2005 |pmid= 16189514 |doi= 10.1038/nature04209 }}
-*{{cite journal  | author=Rual JF, Venkatesan K, Hao T, ''et al.'' |title=Towards a proteome-scale map of the human protein-protein interaction network. |journal=Nature |volume=437 |issue= 7062 |pages= 1173-8 |year= 2005 |pmid= 16189514 |doi= 10.1038/nature04209 }}
+*{{cite journal  | vauthors=Schwartz LM, Woloshin S, Birkmeyer JD |title=How do elderly patients decide where to go for major surgery? Telephone interview survey |journal=BMJ |volume=331 |issue= 7520 |pages= 821 |year= 2005 |pmid= 16192286 |doi= 10.1136/bmj.38614.449016.DE  | pmc=1246083 }}
-*{{cite journal  | author=Schwartz LM, Woloshin S, Birkmeyer JD |title=How do elderly patients decide where to go for major surgery? Telephone interview survey. |journal=BMJ |volume=331 |issue= 7520 |pages= 821 |year= 2005 |pmid= 16192286 |doi= 10.1136/bmj.38614.449016.DE }}
+*{{cite journal   |vauthors=Boumber YA, Kondo Y, Chen X, etal |title=RIL, a LIM gene on 5q31, is silenced by methylation in cancer and sensitizes cancer cells to apoptosis |journal=Cancer Res. |volume=67 |issue= 5 |pages= 1997–2005 |year= 2007 |pmid= 17332327 |doi= 10.1158/0008-5472.CAN-06-3093 }}
-*{{cite journal  | author=Boumber YA, Kondo Y, Chen X, ''et al.'' |title=RIL, a LIM gene on 5q31, is silenced by methylation in cancer and sensitizes cancer cells to apoptosis. |journal=Cancer Res. |volume=67 |issue= 5 |pages= 1997-2005 |year= 2007 |pmid= 17332327 |doi= 10.1158/0008-5472.CAN-06-3093 }}
 }}
 {{refend}}
-{{protein-stub}}
+<!-- The PBB_Controls template provides controls for Protein Box Bot, please see Template:PBB_Controls for details. -->
-{{WikiDoc Sources}}
+{{PBB_Controls
+| update_page = yes
+| require_manual_inspection = no
+| update_protein_box = yes
+| update_summary = yes
+| update_citations = yes
+}}
+{{gene-5-stub}}

PDLIM4: Difference between revisions

Revision as of 17:51, 7 September 2017

References

Further reading

Navigation menu

Search