Sandbox Pathogen-Based Infections: Difference between revisions

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Pathogens
'''Bacteria''' – ''Gram-Positive Cocci''
Bacterial Infections
<li> [[Enterococci]] </li>
Gram Positive
: <li>[[Enterococcus faecalis]] </li>
Enterococci
: <li> [[Enterococcus faecium]] </li>
Enterococcus faecalis
<li> [[Staphylococci]] </li>
Enterococcus faecium
: <li> [[Staphylococcus aureus]] </li>
Staphylococci
: <li> [[CoNS|Staphylococcus, coagulase-negative species]] </li>
Staphylococcus aureus, MRSA
: <li> [[Staphylococcus epidermidis]] </li>
Staphylococcus aureus, MSSA
: <li> [[Staphylococcus haemolyticus]] </li>
Staphylococcus, Coagulase-negative species
: <li> [[Staphylococcus lugdunensis]] </li>
Staphylococcus epidermidis
: <li> [[Staphylococcus saprophyticus]] </li>
Staphylococcus haemolyticus
<li> [[Streptococci]] </li>
Staphylococcus lugdunensis
: <li> [[Streptococcus anginosus]] </li>
Staphylococcus saprophyticus
: <li> [[Streptococcus pneumoniae]] </li>
Streptococci
: <li> [[Streptobacillus moniliformis]] </li>
Streptococcus anginosus group
: <li> [[Streptococcus pyogenes]] </li>
Streptococcus pneumoniae
: <li> [[Streptococcus agalactiae]] </li>
Streptobacillus moniliformis
 
Streptococcus pyogenes
'''Bacteria''' – ''Gram-Positive Bacilli''
Streptococcus agalactiae
: <li> [[Actinomyces israelii]] </li>
Gram-positive bacilli
: <li> [[Arcanobacterium haemolyticum]] </li>
Actinomyces israelii
: <li> [[Bacillus]] </li>
Arcanobacterium (C.) haemolyticum
:: <li> [[Bacillus anthracis]] </li>
Bacillus species
:: <li> [[Bacillus cereus]] </li>
Bacillus anthracis
:: <li> [[Bacillus subtilis]] </li>
Bacillus cereus, Bacillus subtilis
: <li> [[Clostridium]] </li>
Clostridium species
:: <li> [[Clostridium difficile]] </li>
Clostridium difficile
:: <li> [[Clostridium perfringens]] </li>
Clostridium perfringens
:: <li> [[Clostridium tetani]] </li>
Clostridium tetani
: <li> [[Corynebacterium]] </li>
Corynebacterium species
:: <li> [[Corynebacterium diphtheriae]] </li>
Corynebacterium diphtheriae
:: <li> [[Corynebacterium jeikeium]] </li>
Corynebacterium jeikeium
:: <li> [[Corynebacterium urealyticum]] </li>
Corynebacterium urealyticum
: <li> [[Coxiella burnetii]] </li>
Erysipelothrix rhusiopathiae
: <li> [[Erysipelothrix rhusiopathiae]] </li>
Gastroenteritis, Listeria monocytogenes
: <li> [[Listeria monocytogenes]] </li>
Lactobacillus sp.
: <li> [[Lactobacillus]] </li>
Leuconostoc
: <li> [[Leuconostoc]] </li>
Nocardia sp.
: <li> [[Nocardia]] </li>
Propionibacterium acnes
: <li> [[Propionibacterium acnes]] </li>
Rhodococcus equi
: <li> [[Rhodococcus equi]] </li>
Rickettsia
: <li> [[Rickettsia]] </li>
Coxiella burnetii, Q Fever
: <li> [[Ehrlichia]] </li>
Ehrlichia sp., Anaplasma
 
Gram-Negative Cocci & Coccobacilli
'''Bacteria''' – ''Gram-Negative Cocci & Coccobacilli''
Aggregatibacter aphrophilus
<li> [[Aggregatibacter aphrophilus]] </li>
Brucella sp.
<li> [[Brucella]] </li>
Haemophilus ducreyi
<li> [[Haemophilus ducreyi]] </li>
Haemophilus influenzae
<li> [[Haemophilus influenzae]] </li>
Neisseria gonorrhoeae
<li> [[Neisseria gonorrhoeae]] </li>
Neisseria meningitidis
<li> [[Neisseria meningitidis]] </li>
Pasteurella multocida
<li> [[Pasteurella multocida]] </li>
Eikenella corrodens
<li> [[Eikenella corrodens]] </li>
Bordetella pertussis
<li> [[Bordetella pertussis]] </li>
Moraxella catarrhalis
<li> [[Moraxella catarrhalis]] </li>
Spirochetes
 
Leptospira spp.
'''Bacteria''' – ''Spirochetes''
Borrelia sp.
<li> [[Leptospira]] </li>
Treponema pallidum
<li> [[Borrelia]] </li>
Gram-Negative Bacilli
<li> [[Treponema pallidum]] </li>
Enterics
 
Aeromonas hydrophila
'''Bacteria''' – ''Gram-Negative Bacilli''
Citrobacter koseri (diversus), Citrobacter freundii
<li> Enteric flora </li>
Enterobacter cloacae, Enterobacter aerogenes
: <li> [[Aeromonas hydrophila]] </li>
Escherichia coli
: <li> [[Citrobacter koseri]] </li>
Klebsiella rhinoscleromatis, ozaenae
: <li> [[Citrobacter freundii]] </li>
Klebsiella pneumoniae
: <li> [[Enterobacter cloacae]] </li>
Morganella morganii
: <li> [[Enterobacter aerogenes]] </li>
Morganella sp., Providencia sp.
: <li> [[Escherichia coli]] </li>
Proteus species
: <li> [[Klebsiella rhinoscleromatis]] </li>
Proteus vulgaris
: <li> [[Klebsiella pneumoniae]] </li>
Providencia sp.
: <li> [[Morganella morganii]] </li>
Salmonella sp.
: <li> [[Providencia]] </li>
Serratia marcescens
: <li> [[Proteus]] </li>
Shigella sp.
: <li> [[Proteus vulgaris]] </li>
Campylobacter
: <li> [[Providencia]] </li>
Campylobacter fetus
: <li> [[Salmonella]] </li>
Campylobacter jejuni
: <li> [[Serratia marcescens]] </li>
Bartonella sp.
: <li> [[Shigella]] </li>
Non-fermenting Gram-negative bacilli
<li> [[Campylobacter]] </li>
Acinetobacter baumannii
: <li> [[Campylobacter fetus]] </li>
Achromobacter xylosoxidans
: <li> [[Campylobacter jejuni]] </li>
Alcaligenes xylosoxidans
<li> [[Bartonella]] </li>
Bordetella pertussis
<li> Non-fermenters </li>
Burkholderia cepacia
: <li> [[Acinetobacter baumannii]] </li>
Burkholderia pseudomallei (Pseudomonas pseudomallei)
: <li> [[Achromobacter xylosoxidans]] </li>
Stenotrophomonas maltophilia
: <li> [[Bordetella pertussis]] </li>
Elizabethkingia (Chryseobacterium) meningoseptica
: <li> [[Burkholderia cepacia]] </li>
Moraxella catarrhalis
: <li> [[Burkholderia pseudomallei]] </li>
Pseudomonas aeruginosa
: <li> [[Stenotrophomonas maltophilia]] </li>
Capnocytophaga sp.
: <li> [[Elizabethkingia meningoseptica]] </li>
Francisella tularensis
: <li> [[Moraxella catarrhalis]] </li>
Helicobacter pylori
<li> [[Pseudomonas aeruginosa]] </li>
Legionella sp.
<li> [[Capnocytophaga]] </li>
Plesiomonas shigelloides
<li> [[Francisella tularensis]] </li>
Vibrio spp.
<li> [[Helicobacter pylori]] </li>
Vibrio cholerae
<li> [[Legionella]] </li>
Vibrio parahaemolyticus
<li> [[Plesiomonas shigelloides]] </li>
Vibrio vulnificus, V. alginolyticus, V. damsela
<li> [[Vibrio]] </li>
Atypical Organisms
: <li> [[Vibrio cholerae]] </li>
Chlamydophila pneumoniae
: <li> [[Vibrio parahaemolyticus]] </li>
Chlamydophila psittaci
: <li> [[Vibrio vulnificus]] </li>
Coxiella burnetii
 
Legionella sp.
'''Bacteria''' – ''Atypical Organisms''
Pneumonia, Mycoplasma
<li> [[Chlamydophila pneumoniae]] </li>
Misc. Organisms
<li> [[Chlamydophila psittaci]] </li>
Gardnerella vaginalis
<li> [[Coxiella burnetii]] </li>
Eikenella corrodens
<li> [[Legionella]] </li>
Bordetella pertussis
<li> [[Mycoplasma pneumoniae]] </li>
Bartonella sp.
 
Stenotrophomonas: maltophilia
'''Bacteria''' – ''Miscellaneous''
Acinetobacter baumannii
<li> [[Gardnerella vaginalis]] </li>
Anaerobic Gram-Negative Bacilli
<li> [[Eikenella corrodens]] </li>
Bacteroides fragilis
<li> [[Bordetella pertussis]] </li>
Bacteroides sp., Overview
<li> [[Bartonella]] </li>
Fusobacterium necrophorum
<li> [[Stenotrophomonas maltophilia]] </li>
Fungal Infections
<li> [[Acinetobacter baumannii]] </li>
Aspergillosis
 
Allergic Bronchopulmonary (ABPA)
'''Bacteria''' – ''Anaerobic Gram-Negative Bacilli''
Allergic Fungal Sinusitis
<li> [[Bacteroides fragilis]] </li>
Aspergilloma
<li> [[Fusobacterium necrophorum]] </li>
Chronic Cavitary Pulmonary
 
Aspergillosis, Invasive
'''Fungi'''
Transplants, Aspergillus Prevention
<li> [[Aspergillosis]] </li>
Blastomycosis
<li> [[Blastomycosis]] </li>
Blastomycosis, Overview
<li> [[Paracoccidioidomycosis]] </li>
Cutaneous, Pulmonary or Extrapulmonary
<li> [[Candidiasis]] </li>
CNS, Meningitis
<li> [[Chromoblastomycosis]] </li>
See also,
<li> [[Coccidioidomycosis]] </li>
Lobomycosis
<li> [[Cryptococcosis]] </li>
Paracoccidioidomycosis
<li> [[Dermatophytosis]] </li>
Candidiasis
<li> [[Onychomycosis]] </li>
Candidemia, Disseminated
<li> [[Tinea capitis]] </li>
Chronic, Disseminated
<li> [[Tinea corporis]] </li>
CNS, Meningitis
<li> [[Tinea pedis]] </li>
Cutaneous
<li> [[Tinea cruris]] </li>
Endocarditis
<li> [[Tinea versicolor]] </li>
Endophthalmitis, Candida
<li> [[Histoplasmosis]] </li>
Esophageal
<li> [[Mucormycosis]] </li>
Neonatal
<li> [[Penicilliosis]] </li>
Oropharyngeal
<li> [[Sporotrichosis]] </li>
Osteomyelitis
<li> [[Pneumocystis jiroveci]] </li>
Transplants, Prevention
 
Urinary Tract Infection
'''Mycobacteria'''
Vulvovaginitis
<li> [[Mycobacterium tuberculosis]] </li>
Chromoblastomycosis
<li> [[Mycobacterium abscessus]] </li>
Coccidioidomycosis
<li> [[Mycobacterium bovis]] </li>
Disseminated
<li> [[Mycobacterium avium-intracellulare]] </li>
Meningitis
<li> [[Mycobacterium celatum]] </li>
Prophylaxis
<li> [[Mycobacterium chelonae]] </li>
Pulmonary
<li> [[Mycobacterium foruitum]] </li>
Cryptococcosis
<li> [[Mycobacterium haemophilum]] </li>
Pulmonary, Non-Meningeal
<li> [[Mycobacterium genavense]] </li>
Meningitis, Immunocompetent
<li> [[Mycobacterium gordonae]] </li>
Meningitis, HIV/AIDS
<li> [[Mycobacterium kansasii]] </li>
Dermatophytosis
<li> [[Mycobacterium marinum]] </li>
Onychomycosis
<li> [[Mycobacterium scrofulaceum]] </li>
Tinea capitis
<li> [[Mycobacterium simiae]] </li>
Tinea corporis, Tinea pedis, Tinea cruris
<li> [[Mycobacterium ulcerans]] </li>
Tinea versicolor
<li> [[Mycobacterium xenopi]] </li>
Exserohilum rostratum
<li> [[Mycobacterium leprae]] </li>
Fusariosis
 
Histoplasmosis
'''Parasites''' – ''Intestinal Protozoa''
CNS, Meningitis
<li> [[Balantidium coli]] </li>
Mediastinal
<li> [[Blastocystis hominis]] </li>
Pericarditis
<li> [[Cryptosporidium parvum]] </li>
Progressive Disseminated
<li> [[Cryptosporidium hominis]] </li>
Prophylaxis
<li> [[Cyclospora cayetanensis]] </li>
Pulmonary
<li> [[Dientamoeba fragilis]] </li>
Mucormycosis
<li> [[Entamoeba histolytica]] </li>
Paracoccidioidomycosis
<li> [[Giardia lamblia]] </li>
Lobomycosis
<li> [[Isospora belli]] </li>
Penicilliosis
<li> [[Microsporidiosis]] </li>
Phaeohyphomycosis
 
Scedosporiosis
'''Parasites''' – ''Extraintestinal Protozoa''
Sporotrichosis
<li> [[Primary amoebic meningoencephalitis]] </li>
Pneumocystis jiroveci (carinii)(PCP)
<li> [[Acanthamoeba]] </li>
Pneumonia, Pneumocystis (PCP)
<li> [[Balamuthia mandrillaris]] </li>
Transplants, Prevention
<li> [[Naegleria fowleri]] </li>
Mycobacterial Infections
<li> [[Babesia microti]] </li>
M. tuberculosis Infection
<li> [[Leishmaniasis]] </li>
Mycobacterium tuberculosis, Overview
<li> [[Plasmodium]] </li>
Treatment Algorithm
<li> [[Toxoplasma gondii]] </li>
Diagnostic testing (TST and Newer Tests)
<li> [[Trichomonas vaginalis]] </li>
Exposure, Negative TST
<li> [[African trypanosomiasis]] </li>
Latent Infection, High Risk
<li> [[American trypanosomiasis]] </li>
Latent infection, Positive TST
 
Pulmonary
'''Parasites''' – ''Intestinal Nematodes (Roundworms)''
Susceptible Organism
<li> [[Ascaris lumbricoides]] </li>
Mono-drug-resistant
<li> [[Capillaria philippinensis]] </li>
Multi-drug-resistant (MDR)
<li> [[Enterobius vermicularis]] </li>
Extensively-drug-resistant (XDR)
<li> [[Necator americanus]] </li>
Extrapulmonary
<li> [[Ancylostoma duodenale]] </li>
Bone
<li> [[Strongyloides stercoralis]] </li>
Arthritis
<li> [[Trichuris trichiura]] </li>
Meningitis
 
Pregnancy Considerations
'''Parasites''' – ''Extraintestinal Nematodes (Roundworms}''
Treatment Failure, Relapse
<li> [[Ancylostoma braziliense]] </li>
HIV/AIDS
<li> [[Angiostrongylus cantonensis]] </li>
Atypical Mycobacterial Infections
<li> [[Filariasis]] </li>
Atypical Mycobacteria
<li> [[Onchocerciasis]] </li>
M. abscessus
<li> [[Wuchereria bancrofti]] </li>
M. bovis
<li> [[Brugia malayi]] </li>
Bacillus Calmette-Guerin
<li> [[Gnathostoma spinigerum]] </li>
M. avium-intracellulare complex (MAC, MAI)
<li> [[Toxocariasis]] </li>
Immunocompetent
<li> [[Trichinella spiralis]] </li>
Immunocompromised
 
M. celatum
'''Parasites''' – ''Trematodes (Flukes)''
M. chelonae
<li> [[Clonorchis sinensis]] </li>
M. foruitum
<li> [[Dicrocoelium dendriticum]] </li>
M. haemophilum
<li> [[Fasciola hepatica]] </li>
M. genavense
<li> [[Paragonimus westermani]] </li>
M. gordonae
<li> [[Schistosomiasis]] </li>
M. kansasii
 
M. marinum
'''Parasites''' – ''Cestodes (Tapeworms)''
M. scrofulaceum
<li> [[Echinococcus]] </li>
M. simiae
<li> [[Neurocysticercosis]] </li>
M. ulcerans (Buruli Ulcer)
<li> [[Sparganosis]] </li>
M. xenopi
 
M. leprae (Leprosy)
'''Parasites''' – ''Ectoparasites''
Parasitic Infections
<li> [[Body lice]] </li>
Antiparasitic Drugs, Sources
<li> [[Head lice]] </li>
Eosinophilia
<li> [[Pubic lice]] </li>
Intestinal Protozoa
<li> [[Scabies]] </li>
Balantidium coli
<li> [[Myiasis]] </li>
Blastocystis hominis
 
Cryptosporidium parvum, hominis
'''Viral Infections'''
Cyclospora cayetanensis
<li> [[Adenovirus]] </li>
Dientamoeba fragilis
<li> [[SARS]] </li>
Entamoeba histolytica (Amebiasis)
<li> [[Cytomegalovirus]] </li>
Giardia lamblia, Giardiasis
<li> [[Enterovirus D68]] </li>
Cystoisospora belli (Isospora belli)
<li> [[Ebola virus]] </li>
Microsporidiosis
<li> [[Marburg virus]] </li>
Non-pathogenic intestinal protozoa
<li> [[Hantavirus]] </li>
Extraintestinal Protozoa
<li> [[Dengue virus]] </li>
Amebic meningoencephalitis
<li> [[West Nile virus]] </li>
Amebic meningoencephalitis
<li> [[Yellow Fever]] </li>
Acanthaamoeba sp.
<li> [[Chikungunya virus]] </li>
Balamuthia mandrillaris
<li> [[Hepatitis A virus]] </li>
Naegleria fowleri
<li> [[Hepatitis B virus]] </li>
Sappinia diploidea
<li> [[Hepatitis C virus]] </li>
Babesia microti (Babesiosis)
<li> [[Hepatitis D virus]] </li>
Leishmaniasis
<li> [[Hepatitis E virus]] </li>
Malaria
<li> [[Epstein-Barr virus]] </li>
Malaria, Overview
<li> [[Human herpesvirus 6]] </li>
Chloroquine-sensitive, Prophylaxis
<li> [[Roseola|Human herpesvirus 7]] </li>
Chloroquine-resistant, Prophylaxis
<li> [[Kaposi's sarcoma-associated herpesvirus|Human herpesvirus 8 (KSHV)]] </li>
Self-initiated Treatment
<li> [[Herpes simplex virus]] </li>
Severe
<li> [[Varicella-zoster virus]] </li>
Uncomplicated, Non-P. falciparum
<li> [[Human papillomavirus]] </li>
Uncomplicated, P. falciparum
<li> [[Influenza A]] </li>
Toxoplasma gondii
<li> [[Influenza B]] </li>
Immunocompetent
<li> [[Avian influenza]] </li>
HIV/AIDS
<li> [[Swine influenza]] </li>
Transplants, Prevention
<li> [[Measles]] </li>
Trichomonas vaginalis
<li> [[Middle East respiratory syndrome]] </li>
Trypanosomiasis
<li> [[Paramyxovirus]] </li>
American
<li> [[Parvovirus B19]] </li>
East African
<li> [[BK virus]] </li>
West African
<li> [[JC virus]] </li>
Transplants, Prevention
<li> [[Rabies]] </li>
Intestinal Nematodes (Roundworms)
<li> [[Respiratory Syncytial Virus]] </li>
Anisakis simplex, Anisakiasis
<li> [[Rhinovirus]] </li>
Ascaris lumbricoides, Ascariasis
<li> [[Rotavirus]] </li>
Capillaria philippinensis, Capillariasis
<li> [[Smallpox]] </li>
Enterobius vermicularis (Pinworm)
<li> [[HIV/AIDS]] </li>
Gongylonemiasis
Hookworm, Necator americanus and Ancylostoma duodenale
Strongyloides stercoralis, Strongyloidiasis
Trichostrongylus orientalis
Trichuris trichiura, Whipworm
Extraintestinal Nematodes (Roundworms)
Ancylostoma braziliense, caninum (Cutaneous Larva Migrans)
Angiostrongylus cantonensis, Angiostrongyliasis
Baylisascariasis, Raccoon ascaris
Dracunculus medinensis, Guinea Worm
Filariasis
Filariasis, Overview
Body Cavity (mansonellosis)
Cutaneous (Loiasis, onchocerciasis)
Dirofilariasis
Lymphatic (W. bancrofti, B. malayi)
Gnathostoma spinigerum, Eosinophilic Myeloencephalitis
Toxocariasis
Trichinella spiralis, Trichinosis
Trematodes (Flukes)
Clonorchis sinensis, liver fluke
Dicrocoelium dendriticum
Fasciola buski, intestinal fluke
Fasciola hepatica, sheep liver fluke
Heterophyes heterophyes (intestinal fluke); Metagonimus yokogawai (intestinal fluke)
Paragonimus westermani, lung fluke
Schistosomiasis
Cestodes (Tapeworms)
Echinococcus
Intestinal tapeworms
Neurocysticercosis
Sparganosis, Spirometra mansonoides
Ectoparasites
Body Lice
Head Lice
Pubic Lice
Scabies
Myiasis
Viral Infections
Adenovirus
Coronavirus (SARS)
Cytomegalovirus
Cytomegalovirus, Gastrointestinal Disease
Cytomegalovirus in Transplant Recipients
Cytomegalovirus Neurologic Disease
Pneumonia, Cytomegalovirus
Pregnancy
Prevention
Solid Organ
Stem Cell
Retinitis, Cytomegalovirus
Enterovirus
Erythema Multiforme
Hemorrhagic Fever Viruses
Crimean-Congo
Ebola, Marburg
Hantavirus Pulmonary Syndrome
Renal Syndromes
Dengue
West Nile Virus
Yellow Fever Virus
Chikungunya Fever
Hepatitis
Hepatitis Overview
HAV, Acute, Treatment
Immunization (HAV, HBV)
Hepatitis B (HBV)
HBV Clinical Presentation
HBV Epidemiology
HBV, Exposure Management
HBV Natural History
HBV, Prophylaxis, Transplants
HBV Treatment
Transplants, Hepatitis B Prevention
Hepatitis C (HCV)
HCV Epidemiology
HCV Diagnosis
HCV Natural History
HCV Clinical Presentation and Staging
HCV Treatment Setting
HCV Treatment
HCV Drugs In Development
HCV, Exposure Management
Herpesviruses
Cytomegalovirus
Cytomegalovirus, Gastrointestinal Disease
Cytomegalovirus in Transplant Recipients
Cytomegalovirus Neurologic Disease
Pneumonia, Cytomegalovirus
Pregnancy
CMV Prevention
Solid Organ
Stem Cell
Retinitis, Cytomegalovirus
Epstein-Barr Virus (Mono)
HHV-6, HHV-7, HHV-8
Herpes simplex virus (HSV Types 1, 2)
Bell's Palsy
Encephalitis
Genital
Gingivostomatitis
Oral Labial
Stomatitis
Herpes simiae
Varicella-Zoster virus (VZV), Chickenpox
Herpes-Zoster, Shingles
Transplants and Hematological Malignancy, HSV and VZV Prevention
HIV, AIDS
Antiretroviral Therapy, Overview
Antiretrovrial Therapy, Treatment Naive Adult
HIV/Hepatitis Exposure Management
HIV Exposure, Hepatitis Exposure, Overview
Occupational
Non-occupational
Human Metapneumovirus (HMPV)
Human Papillomavirus (HPV)
Influenza
Influenza Virus, Overview
Influenza A
Seasonal A/H1N1
Swine A/H1N1
A/H3N2
Influenza B
Influenza, Avian H5N1
Influenza, Prevention
Measles
Middle East Respiratory Syndrome, MERS
Monkey Pox
Monkey Pox
See Also, Gastroenteritis, Empiric Therapy
Nipah Virus
Orf, Ecthyma contagiosum
Paramyxovirus
Parvo B19 Virus
Papovavirus, Polyomavirus
Progressive Multifocal Leukoencephalopathy (PML)
BK Virus Induced Neuropathy
Progressive multifocal leukoencephalopathy, JC virus
Rabies
Rabies, Post-Exposure Prophylaxis
See Also, Bites
Respiratory Syncytial Virus
Rhinovirus
Rotavirus
SFTSV (Severe Fever Thrombocytopenia Syndrome Virus)
Smallpox
HIV/AIDS Therapy
HIV/AIDS Overview
HIV Risk Assessment
Recommendations for HIV Testing
Natural History of HIV
HIV Clinical Staging, Classification
HIV Infection in Children, Overview
HIV in the Fetus and Newborn, Overview
HIV in Women and Pregnancy, Overview
Patient Evaluation & Prevention
Pre-Exposure Prophylaxis (PrEP)
Initial Evaluation of the HIV-Infected Adult
Initial Evaluation of HIV-Infected Child
HIV Exposure, Hepatitis Exposure, Overview
HIV, Occupational Exposure
HIV, Non-occupational Exposure
Immunization, Routine, HIV+ Adults
Immunization, Travel, HIV+ Adults
Immunization, Routine, HIV+ Child
HIV and Travel Considerations
Diagnostic & Resistance Testing
HIV Diagnosis & Testing, Overview
Rapid HIV Antibody Screening Testing
HIV Enzyme Immunoassay Antibody Tests
HIV Combined Antigen Antibody Tests & Home Tests
Detection & Quantitation of HIV-1 RNA, Viral Load
CD4 & CD8 T-Lymphocyte Counts
HTLV Diagnosis & Testing
ARV Drug Resistance Testing, Overview
Genotype Resistance Testing
Phenotype Resistance Testing
Diagnosis of HIV-2 Infection
Diagnosis of Primary/Acute HIV Infection
Genotype Resistance Mutations: NRTIs
Genotype Resistance Mutations: NNRTI
Genotype Resistance Mutations: PI
Genotype Resistance Mutations: All Other
Treatment: Antiretroviral Therapy, ART
Antiretroviral Therapy (ART), Overview
Antiretroviral Therapy (ART), Adult
ARV Regimens Not Recommended, Adult
ART Treatment Failure, Adult
Starting ART in Children
Recommended ART Regimens in Children
Response to ART in Children
ART in Pregnancy
ARV Drugs: Adverse Effects By Clinical Presentation
Primary (Acute, Early) HIV Infection
HIV-2
Antiretroviral Agents
Antiretroviral Drugs, Overview
Nucleoside, Nucleotide Agents (NRTIs)
Abacavir
Didanosine
Emtricitabine
Lamivudine
Stavudine
Tenofovir disoproxil fumarate
Zidovudine
Non-nucleoside Agents (NNRTIs)
Delavirdine
Efavirenz
Etravirine
Nevirapine
Rilpivirine
NRTI/NNRTI Combinations
Atripla
Combivir
Complera, Eviplera
Epzicom
Trizivir
Truvada
Protease Inhibitors (PIs)
Atazanavir
Darunavir
Fosamprenavir
Indinavir
Lopinavir-Ritonavir
Nelfinavir
Ritonavir
Saquinavir
Tipranavir
Fusion Inhibitor
Enfuvirtide
CCR-5 Antagonist
Maraviroc
Strand Transfer Integrase Inhibitor (STII)
Raltegravir
Elvitegravir (Stribild)
ARV Drug Cost Comparison
Antiretroviral Drug-Drug Interactions
Overlapping Toxicities: ARV Drugs & Other Drugs
HIV ARV Drugs in Development
HIV-related Syndromes
Editorial Note to Readers
Immune Reconstitution Inflammatory Syndrome, IRIS
ART: Effect on Specific OIs
Clinical Syndromes, OIs in HIV+ Children
HIV/AIDS-associated Malignancies
Stimulating Erythropoiesis and Granulocyte Production

Latest revision as of 02:28, 11 May 2015

Bacteria – Gram-Positive Cocci

  • Enterococci
  • Enterococcus faecalis
  • Enterococcus faecium
  • Staphylococci
  • Staphylococcus aureus
  • Staphylococcus, coagulase-negative species
  • Staphylococcus epidermidis
  • Staphylococcus haemolyticus
  • Staphylococcus lugdunensis
  • Staphylococcus saprophyticus
  • Streptococci
  • Streptococcus anginosus
  • Streptococcus pneumoniae
  • Streptobacillus moniliformis
  • Streptococcus pyogenes
  • Streptococcus agalactiae

    • Bacteria – Gram-Positive Bacilli

  • Actinomyces israelii
  • Arcanobacterium haemolyticum
  • Bacillus
  • Bacillus anthracis
  • Bacillus cereus
  • Bacillus subtilis
  • Clostridium
  • Clostridium difficile
  • Clostridium perfringens
  • Clostridium tetani
  • Corynebacterium
  • Corynebacterium diphtheriae
  • Corynebacterium jeikeium
  • Corynebacterium urealyticum
  • Coxiella burnetii
  • Erysipelothrix rhusiopathiae
  • Listeria monocytogenes
  • Lactobacillus
  • Leuconostoc
  • Nocardia
  • Propionibacterium acnes
  • Rhodococcus equi
  • Rickettsia
  • Ehrlichia

    • Bacteria – Gram-Negative Cocci & Coccobacilli

  • Aggregatibacter aphrophilus
  • Brucella
  • Haemophilus ducreyi
  • Haemophilus influenzae
  • Neisseria gonorrhoeae
  • Neisseria meningitidis
  • Pasteurella multocida
  • Eikenella corrodens
  • Bordetella pertussis
  • Moraxella catarrhalis

    • Bacteria – Spirochetes

  • Leptospira
  • Borrelia
  • Treponema pallidum

    • Bacteria – Gram-Negative Bacilli

  • Enteric flora
  • Aeromonas hydrophila
  • Citrobacter koseri
  • Citrobacter freundii
  • Enterobacter cloacae
  • Enterobacter aerogenes
  • Escherichia coli
  • Klebsiella rhinoscleromatis
  • Klebsiella pneumoniae
  • Morganella morganii
  • Providencia
  • Proteus
  • Proteus vulgaris
  • Providencia
  • Salmonella
  • Serratia marcescens
  • Shigella
  • Campylobacter
  • Campylobacter fetus
  • Campylobacter jejuni
  • Bartonella
  • Non-fermenters
  • Acinetobacter baumannii
  • Achromobacter xylosoxidans
  • Bordetella pertussis
  • Burkholderia cepacia
  • Burkholderia pseudomallei
  • Stenotrophomonas maltophilia
  • Elizabethkingia meningoseptica
  • Moraxella catarrhalis
  • Pseudomonas aeruginosa
  • Capnocytophaga
  • Francisella tularensis
  • Helicobacter pylori
  • Legionella
  • Plesiomonas shigelloides
  • Vibrio
  • Vibrio cholerae
  • Vibrio parahaemolyticus
  • Vibrio vulnificus

    • Bacteria – Atypical Organisms

  • Chlamydophila pneumoniae
  • Chlamydophila psittaci
  • Coxiella burnetii
  • Legionella
  • Mycoplasma pneumoniae

    • Bacteria – Miscellaneous

  • Gardnerella vaginalis
  • Eikenella corrodens
  • Bordetella pertussis
  • Bartonella
  • Stenotrophomonas maltophilia
  • Acinetobacter baumannii

    • Bacteria – Anaerobic Gram-Negative Bacilli

  • Bacteroides fragilis
  • Fusobacterium necrophorum

    • Fungi

  • Aspergillosis
  • Blastomycosis
  • Paracoccidioidomycosis
  • Candidiasis
  • Chromoblastomycosis
  • Coccidioidomycosis
  • Cryptococcosis
  • Dermatophytosis
  • Onychomycosis
  • Tinea capitis
  • Tinea corporis
  • Tinea pedis
  • Tinea cruris
  • Tinea versicolor
  • Histoplasmosis
  • Mucormycosis
  • Penicilliosis
  • Sporotrichosis
  • Pneumocystis jiroveci

    • Mycobacteria

  • Mycobacterium tuberculosis
  • Mycobacterium abscessus
  • Mycobacterium bovis
  • Mycobacterium avium-intracellulare
  • Mycobacterium celatum
  • Mycobacterium chelonae
  • Mycobacterium foruitum
  • Mycobacterium haemophilum
  • Mycobacterium genavense
  • Mycobacterium gordonae
  • Mycobacterium kansasii
  • Mycobacterium marinum
  • Mycobacterium scrofulaceum
  • Mycobacterium simiae
  • Mycobacterium ulcerans
  • Mycobacterium xenopi
  • Mycobacterium leprae

    • Parasites – Intestinal Protozoa

  • Balantidium coli
  • Blastocystis hominis
  • Cryptosporidium parvum
  • Cryptosporidium hominis
  • Cyclospora cayetanensis
  • Dientamoeba fragilis
  • Entamoeba histolytica
  • Giardia lamblia
  • Isospora belli
  • Microsporidiosis

    • Parasites – Extraintestinal Protozoa

  • Primary amoebic meningoencephalitis
  • Acanthamoeba
  • Balamuthia mandrillaris
  • Naegleria fowleri
  • Babesia microti
  • Leishmaniasis
  • Plasmodium
  • Toxoplasma gondii
  • Trichomonas vaginalis
  • African trypanosomiasis
  • American trypanosomiasis

    • Parasites – Intestinal Nematodes (Roundworms)

  • Ascaris lumbricoides
  • Capillaria philippinensis
  • Enterobius vermicularis
  • Necator americanus
  • Ancylostoma duodenale
  • Strongyloides stercoralis
  • Trichuris trichiura

    • Parasites – Extraintestinal Nematodes (Roundworms}

  • Ancylostoma braziliense
  • Angiostrongylus cantonensis
  • Filariasis
  • Onchocerciasis
  • Wuchereria bancrofti
  • Brugia malayi
  • Gnathostoma spinigerum
  • Toxocariasis
  • Trichinella spiralis

    • Parasites – Trematodes (Flukes)

  • Clonorchis sinensis
  • Dicrocoelium dendriticum
  • Fasciola hepatica
  • Paragonimus westermani
  • Schistosomiasis

    • Parasites – Cestodes (Tapeworms)

  • Echinococcus
  • Neurocysticercosis
  • Sparganosis

    • Parasites – Ectoparasites

  • Body lice
  • Head lice
  • Pubic lice
  • Scabies
  • Myiasis

    • Viral Infections

  • Adenovirus
  • SARS
  • Cytomegalovirus
  • Enterovirus D68
  • Ebola virus
  • Marburg virus
  • Hantavirus
  • Dengue virus
  • West Nile virus
  • Yellow Fever
  • Chikungunya virus
  • Hepatitis A virus
  • Hepatitis B virus
  • Hepatitis C virus
  • Hepatitis D virus
  • Hepatitis E virus
  • Epstein-Barr virus
  • Human herpesvirus 6
  • Human herpesvirus 7
  • Human herpesvirus 8 (KSHV)
  • Herpes simplex virus
  • Varicella-zoster virus
  • Human papillomavirus
  • Influenza A
  • Influenza B
  • Avian influenza
  • Swine influenza
  • Measles
  • Middle East respiratory syndrome
  • Paramyxovirus
  • Parvovirus B19
  • BK virus
  • JC virus
  • Rabies
  • Respiratory Syncytial Virus
  • Rhinovirus
  • Rotavirus
  • Smallpox
  • HIV/AIDS
    • Retrieved from "https://www.wikidoc.org/index.php?title=Sandbox_Pathogen-Based_Infections&oldid=1096098"