Families of TATA box genes: Difference between revisions

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==Designated families of genes==
# [[TATA box actin/cytoskeleton/contractile family|Actin/cytoskeleton/contractile family]]: Gene IDs: 58, 60, 70.
# [[TATA box actin/cytoskeleton/contractile family|Actin/cytoskeleton/contractile family]]: Gene IDs: 58, 60, 70.
# Activity against gram-positive bacteria and yeasts: Gene IDs: 116842.
# [[TATA box albumin family|Albumin family]]: Gene IDs: 173.
# Adenylate kinase: Gene IDs: 203.
# Albumin gene family: Gene IDs: 173.
# [[TATA box aldolase family|Aldolases]]: Gene IDs: 229, 230.
# [[TATA box aldolase family|Aldolases]]: Gene IDs: 229, 230.
# [[TATA box alkaline phosphatase family|Alkaline phosphatase family]]: Gene IDs: 249.
# [[TATA box alkaline phosphatase family|Alkaline phosphatase family]]: Gene IDs: 249.
# Alpha-amylase family: Gene IDs: 279.
# [[TATA box amelogenin family|Amelogenin family]]: Gene IDs: 265.
# [[TATA box amelogenin family|Amelogenin family]]: Gene IDs: 265.
# [[TATA box amylase family|Amylase family]]: Gene IDs: 280.
# [[TATA box amylase family|Amylase family]]: Gene IDs: 279, 280.
# [[TATA box annexin family|Annexin family]]: Gene IDs: 301, 302.
# [[TATA box annexin family|Annexin family]]: Gene IDs: 301, 302.
# [[TATA box anti-proliferative family|Anti-proliferative family]]: Gene IDs: 694.
# AP-1 family of transcription factors: Gene IDs: .
# AP-1 family of transcription factors: Gene IDs: .
# Apolipoprotein (apo-) A-II: Gene IDs: 336.
# Apolipoprotein of chylomicrons and low density lipoproteins (LDL): Gene IDs: 338.
# [[TATA box aquaporin family|Aquaporin family]]: Gene IDs: 360.
# [[TATA box aquaporin family|Aquaporin family]]: Gene IDs: 360.
# Arginase type I: Gene IDs: 383.
# [[TATA box ATPases family|ATPases family]]: Gene IDs: 481, 482, 496.
# Axoneme assembly: Gene IDs: 84223.
# [[TATA box basic helix-loop-helix family|Basic helix-loop-helix family]]: Gene IDs: 3280.
# Binding activity: Gene IDs: 84223, 83998, 83638.
# [[TATA box bombesin-like family|Bombesin-like family]]: Gene IDs: 2922.
# Binds copper, nickel, fatty acids and bilirubin: Gene IDs: 174.
# [[TATA box calcitonin family|Calcitonin family]]: Gene IDs: 3375
# Binds phospholipids: Gene IDs: 301.
# [[TATA box carbonic anhydrase family|Carbonic anhydrase family]]: Gene IDs: 767.
# cAMP-response element binding family: Gene IDs: .
# Cell cycle transcription factor family: Gene IDs: 79733.
# Cell cycle transcription factor family: Gene IDs: 79733.
# Cellular triglyceride homeostasis: Gene IDs: 114899.
# [[TATA box corticotropin-releasing factor family|Corticotropin-releasing factor family]]: Gene IDs: 1392.
# Chondrocyte differentiation; chondrocyte proliferation: Gene IDs: 389125.
# [[TATA box creatine kinase isoenzyme family|Creatine kinase isoenzyme family]]: GeneIDs: 1160.
# Class I fructose-biphosphate aldolase family: Gene IDs: 230.
# [[TATA box DEAD box family|DEAD box family]]: Gene IDs: 1655.
# Component of triglyceride (TG)-rich lipoproteins (TRLs) including very low density lipoproteins (VLDL), high density lipoproteins (HDL) and chylomicrons: Gene IDs: 345.
# [[TATA box early response family|Early response family]]: Gene IDs: 677.
# Copper amine oxidases: Gene IDs: 314.
# [[TATA box elongation factor family|Elongation factor family]]: Gene IDs: 1938.
# Enables identical protein binding activity: Gene IDs: 57823.
# [[TATA box endothelin family|Endothelin family]]: Gene IDs: 1906.
# Enable signaling receptor binding activity: Gene IDs: 64111.
# [[TATA box epidermal growth factor family|Epidermal growth factor family]]: Gene IDs: 374.
# Enables guanyl-nucleotide exchange factor activity: Gene IDs: 153020.
# [[TATA box fatty acid binding family|Fatty acid binding family]]: Gene IDs: 2168.
# Epidermal growth factor family: Gene IDs: 374.
# [[TATA box fatty acid desaturase family|Fatty acid desaturase family]]: Gene IDs: 3995.
# [[TATA box glucagon family|Glucagon family]]
# [[TATA box fibroblast growth factor family|Fibroblast growth factor family]]: Gene IDs: 2250.
# [[TATA box forkhead family|Forkhead family]]: Gene IDs: 3171.
# [[TATA box Fos family|Fos family]]: Gene IDs: 2353.
# [[TATA box glucagon family|Glucagon family]]: Gene IDs: 7432.
# [[TATA box glutamine synthetase family|Glutamine synthetase family]]: Gene IDs: 2752.
# [[TATA box glycoprotein hormone alpha chain family|Glycoprotein hormone alpha chain family]]: Gene IDs: 1081.
# [[TATA box glycoprotein hormone beta chain family|Glycoprotein hormone beta chain family]]: Gene IDs: 7252.
# G-protein-coupled receptors (GPCR) large family: Gene IDs: 81285.
# G-protein-coupled receptors (GPCR) large family: Gene IDs: 81285.
# GTP binding activity: Gene IDs: 84790.
# [[TATA box heat shock family|Heat shock]]: Gene IDs: 3304, 3308, 3309, 3320, 27129, 126393.
# [[TATA box heat shock family|Heat shock]]: Gene IDs: 3304, 3308, 3309, 3320, 27129, 126393.
# [[TATA box heterogeneous nuclear ribonucleoprotein family|Heterogeneous nuclear ribonucleoprotein family]]: Gene IDs: 3182.
# [[TATA box histone family|Histone family]]: Gene IDs: 3010, 85235.
# [[TATA box histone family|Histone family]]: Gene IDs: 3010, 85235.
# [[TATA box HMG-CoA synthase family|HMG-CoA synthase family]]: Gene IDs: 3158.
# [[TATA box homeobox family|Homeobox family]]: Gene IDs: 3232.
# 'Housekeeping' family: Gene IDs: 229.
# 'Housekeeping' family: Gene IDs: 229.
# Identical protein binding activity: Gene IDs: 114899.
# [[TATA box hydrolase family|Hydrolase family]]: Gene IDs: 1116.
# Inhibit inflammatory cytokines to disrupt inflammatory cascades: Gene IDs: 2.
# [[TATA box immunoglobulin like domain containing family|Immunoglobulin like domain containing family]]: Gene IDs: 1, 8483.
# Integral component of membrane: Gene IDs: 126364.
# [[TATA box interferon family|Interferon family]]: Gene ID: 3662.
# Involved in adaptive immune response: Gene IDs: 57823.
# [[TATA box iodothyronine deiodinase family|Iodothyronine deiodinase family]]: Gene IDs: 1735.
# Kelch-like family: Gene IDs: 131377.
# [[TATA box Kelch-like family|Kelch-like family]]: Gene IDs: 131377.
# [[TATA box keratin family|Keratin family]]: Gene IDs: 3848, 3858, 3859, 3860, 3861, 3872, 147183, 342574.
# [[TATA box keratin family|Keratin family]]: Gene IDs: 3848, 3858, 3859, 3860, 3861, 3872, 147183, 342574.
# Maintaining blood pressure, body fluid and electrolyte homeostasis: Gene IDs: 183.
# [[TATA box laminin family|Laminin family]]: Gene IDs: 3918.
# Mammalian activation transcription factor/cAMP responsive element-binding (CREB) family: Gene IDs: 467.
# [[TATA box lipocalin family|Lipocalin family]]: Gene IDs: 1382.
# Mammary gland and respiratory system: Gene IDs: 117158.
# [[TATA box CREB family|Mammalian activation transcription factor/cAMP responsive element-binding (CREB) family]]: Gene IDs: 467, 468.
# Membranes: Gene IDs: 126364.
# [[TATA box membrane-spanning family|Membrane-spanning family]]: Gene IDs: 2206.
# MIP/aquaporin family: Gene IDs: 359.
# [[TATA box metalloproteinase family|Metalloproteinase family]]: Gene IDs: 4327.
# Mitochondrial solute carrier subfamily: Gene IDs: 292.
# [[TATA box metallothionein family|Metallothionein family]]: Gene IDs: 4504.
# Muscle ankyrin repeat protein (MARP) family: Gene IDs: 200539.
# [[TATA box mucin family|Mucin family]]: Gene IDs: 4582.
# Myristoylated alanine-rich C-kinase substrate (MARCKS) family: Gene IDs: 65108.
# Myristoylated alanine-rich C-kinase substrate (MARCKS) family: Gene IDs: 65108.
# Na+/K+ and H+/K+ ATPases beta chain family: Gene IDs: 481, 482.
# Negative regulation of gluconeogenesis: Gene IDs: 114899.
# Negative regulation of gonadotropin secretion: Gene IDs: 64111.
# Negative regulation of NIK/NF-kappaB signaling: Gene IDs: 114899.
# Negative regulation of signal transduction: Gene IDs: 115265.
# Neuregulins: Gene IDs: 145957.
# [[TATA box nuclear hormone receptor family|Nuclear hormone receptor family]]: Gene IDs: 8431.
# [[TATA box nuclear hormone receptor family|Nuclear hormone receptor family]]: Gene IDs: 8431.
# [[TATA box opsin family|Opsin family]]
# [[TATA box osteocalcin family|Osteocalcin family]]: Gene IDs: 4256.
# [[TATA box pentraxin family|Pentraxin family]]: Gene IDs:1401.
# [[TATA box peptidase family|Peptidase family]]: Gene IDs: 1215, 4316, 4319, 4321, 4322, 5225.
# [[TATA box peptidase family|Peptidase family]]: Gene IDs: 1215, 4316, 4319, 4321, 4322, 5225.
# [[TATA box peroxidase family|Peroxidase family]]: Gene IDs: 8288.
# [[TATA box peroxidase family|Peroxidase family]]: Gene IDs: 8288.
# [[TATA box phosphotransferase family|Phosphotransferase family]]: Gene IDs: 1152.
# [[TATA box platelet-derived growth factors|Platelet-derived growth factors]]: Gene IDs: 1490, 5155.
# [[TATA box platelet-derived growth factors|Platelet-derived growth factors]]: Gene IDs: 1490, 5155.
# [[TATA box proteoglycan family|Proteoglycan family]]: Gene IDs: 1833.
# [[TATA box quinone family|Quinone family]]: Gene IDs: 1728.
# [[TATA box RasGEF domain family|RasGEF domain family]]: Gene IDs: 153020.
# [[TATA box RAD/GEM family|RAD/GEM family]]: Gene IDs: 2669.
# [[TATA box retinoic acid family|Retinoic acid family]]: Gene IDs: 1382.
# [[TATA box secretoglobin family|Secretoglobin family]]: Gene IDs: 117158.
# [[TATA box selenium-binding family|Selenium-binding family]]: Gene IDs: 8991.
# [[TATA box serine protease family|Serine protease family]]: Gene IDs: 1990, 5645, 5650.
# [[TATA box small GTPase superfamily|Small GTPase superfamily]]: Gene IDs: 390.
# Small integral membrane protein with six bilayer spanning domains that functions as a water channel: Gene IDs: 358.
# [[TATA box solute carrier family|Solute carrier family]]: Gene IDs: 84889.
# [[TATA box somatotropin/prolactin family|Somatotropin/prolactin family]]: Gene IDs: 2688.
# [[TATA box transforming growth factor superfamily|Transforming growth factor superfamily]]
# [[TATA box tumor necrosis factor family|Tumor necrosis factor family]]: Gene IDs: 4049.
# [[TATA box VEGFR family|VEGFR family]]: Gene IDs: 2321.
# [[TATA box voltage-dependent chloride channel family|Voltage-dependent chloride channel family]]: Gene IDs: 1180.
# [[TATA box voltage-gated chloride channel family|Voltage-gated chloride channel family]]: Gene IDs: 1188.
==Superfamilies of genes==
# Superfamily of extracellular matrix proteins: [[TATA box amelogenin family|Amelogenin family]].
# [[TATA box ATP-binding cassette transporter superfamily|ATP-binding cassette transporter superfamily]]: Gene ID: 19, 10057.
# [[TATA box crystallin superfamily|Crystallin superfamily]]: Gene IDs: 1411.
# [[TATA box cytokine superfamily|Cytokine superfamily]]: Gene IDs: 1440.
# [[TATA box growth factor superfamily|Growth factor superfamily]]: Gene IDs: .
# [[TATA box insulin superamily|Insulin superfamily]]: Gene IDs: 3640.
# Intermediate filament (IF) protein superfamily: [[TATA box keratin family|Keratin family]].
# [[TATA box lectins superfamily|Lectins superfamily]]: Gene IDs: 653509.
# [[TATA box serpin superfamily|Serine protease inhibitor superfamily]]: Gene IDs: 183, 5054, 5055, 5275.
# Stem cell homeostasis: Gene IDs: 80177.
# [[TATA box steroid-thyroid hormone-retinoid receptor superfamily|Steroid-thyroid hormone-retinoid receptor superfamily]]: Gene IDs: 3164.
# Structural constituent of cytoskeleton: Gene IDs: 84790.
# [[TATA box troponin superfamily|Troponin superfamily]]: Gene IDs: 794.
==Undesignated families of genes==
# Activity against gram-positive bacteria and yeasts: Gene IDs: 116842.
# Adenylate kinase: Gene IDs: 203.
# Apolipoprotein (apo-) A-II: Gene IDs: 336.
# Apolipoprotein of chylomicrons and low density lipoproteins (LDL): Gene IDs: 338.
# Polyamine biosynthesis: Gene IDs: 262.
# Polyamine biosynthesis: Gene IDs: 262.
# Protease inhibitor and cytokine transporter: Gene IDs: 2.
# Protease inhibitor and cytokine transporter: Gene IDs: 2.
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# Regulation of transcription: Gene IDs: 81606.
# Regulation of transcription: Gene IDs: 81606.
# Regulator of aldosterone secretion: Gene IDs: 185.
# Regulator of aldosterone secretion: Gene IDs: 185.
# Secretoglobin family: Gene IDs: 117158.
# Secretory: Gene IDs: 117158, 200504.
# [[TATA box selenium-binding family|Selenium-binding family]]: Gene IDs: 8991.
# [[TATA box serine protease family|Serine protease family]]: Gene IDs: 1990, 5645, 5650.
# Small integral membrane protein with six bilayer spanning domains that functions as a water channel: Gene IDs: 358.
# Solute carrier family 7: Gene IDs: 84889.
# Stem cell homeostasis: Gene IDs: 80177.
# Structural constituent of cytoskeleton: Gene IDs: 84790.
# DNA-binding family tax-responsive enhancer element in the left-to-right (LTR) of the Human T-lymphotropic virus 1 (HTLV-1) transcription factor also characterized as the cAMP-response element binding protein 2 (CREB-2): Gene IDs: 468.
# [[TATA box transforming growth factor superfamily]]
# Type I (acidic) keratin family: Gene IDs: 147183, 342574.
# Vasodilation, regulation of hormone secretion, promotion of angiogenesis, and antimicrobial activity: Gene IDs: 133.
# Vasodilation, regulation of hormone secretion, promotion of angiogenesis, and antimicrobial activity: Gene IDs: 133.
# Water channel protein aquaporin 3: Gene IDs: 360.
# ZIC family of C2H2-type zinc fingers: Gene IDs: 84107.
# ZIC family of C2H2-type zinc fingers: Gene IDs: 84107.
# [[TATA box ATP-binding cassette transporter superfamily|Superfamily of ATP-binding cassette (ABC) transporters]]: Gene ID: 19, 10057.
# Superfamily of extracellular matrix proteins: amelogenin family: Gene ID: 265.
# Superfamily of intermediate filament (IF) proteins: keratin family.
# Superfamily of small GTPase protein: Gene IDs: 390.
# [[TATA box serpin superfamily|Superfamily of serine protease inhibitors]]: Gene IDs: 183, 5054, 5055, 5275.

Latest revision as of 02:45, 1 August 2024

Designated families of genes

  1. Actin/cytoskeleton/contractile family: Gene IDs: 58, 60, 70.
  2. Albumin family: Gene IDs: 173.
  3. Aldolases: Gene IDs: 229, 230.
  4. Alkaline phosphatase family: Gene IDs: 249.
  5. Amelogenin family: Gene IDs: 265.
  6. Amylase family: Gene IDs: 279, 280.
  7. Annexin family: Gene IDs: 301, 302.
  8. Anti-proliferative family: Gene IDs: 694.
  9. AP-1 family of transcription factors: Gene IDs: .
  10. Aquaporin family: Gene IDs: 360.
  11. ATPases family: Gene IDs: 481, 482, 496.
  12. Basic helix-loop-helix family: Gene IDs: 3280.
  13. Bombesin-like family: Gene IDs: 2922.
  14. Calcitonin family: Gene IDs: 3375
  15. Carbonic anhydrase family: Gene IDs: 767.
  16. Cell cycle transcription factor family: Gene IDs: 79733.
  17. Corticotropin-releasing factor family: Gene IDs: 1392.
  18. Creatine kinase isoenzyme family: GeneIDs: 1160.
  19. DEAD box family: Gene IDs: 1655.
  20. Early response family: Gene IDs: 677.
  21. Elongation factor family: Gene IDs: 1938.
  22. Endothelin family: Gene IDs: 1906.
  23. Epidermal growth factor family: Gene IDs: 374.
  24. Fatty acid binding family: Gene IDs: 2168.
  25. Fatty acid desaturase family: Gene IDs: 3995.
  26. Fibroblast growth factor family: Gene IDs: 2250.
  27. Forkhead family: Gene IDs: 3171.
  28. Fos family: Gene IDs: 2353.
  29. Glucagon family: Gene IDs: 7432.
  30. Glutamine synthetase family: Gene IDs: 2752.
  31. Glycoprotein hormone alpha chain family: Gene IDs: 1081.
  32. Glycoprotein hormone beta chain family: Gene IDs: 7252.
  33. G-protein-coupled receptors (GPCR) large family: Gene IDs: 81285.
  34. Heat shock: Gene IDs: 3304, 3308, 3309, 3320, 27129, 126393.
  35. Heterogeneous nuclear ribonucleoprotein family: Gene IDs: 3182.
  36. Histone family: Gene IDs: 3010, 85235.
  37. HMG-CoA synthase family: Gene IDs: 3158.
  38. Homeobox family: Gene IDs: 3232.
  39. 'Housekeeping' family: Gene IDs: 229.
  40. Hydrolase family: Gene IDs: 1116.
  41. Immunoglobulin like domain containing family: Gene IDs: 1, 8483.
  42. Interferon family: Gene ID: 3662.
  43. Iodothyronine deiodinase family: Gene IDs: 1735.
  44. Kelch-like family: Gene IDs: 131377.
  45. Keratin family: Gene IDs: 3848, 3858, 3859, 3860, 3861, 3872, 147183, 342574.
  46. Laminin family: Gene IDs: 3918.
  47. Lipocalin family: Gene IDs: 1382.
  48. Mammalian activation transcription factor/cAMP responsive element-binding (CREB) family: Gene IDs: 467, 468.
  49. Membrane-spanning family: Gene IDs: 2206.
  50. Metalloproteinase family: Gene IDs: 4327.
  51. Metallothionein family: Gene IDs: 4504.
  52. Mucin family: Gene IDs: 4582.
  53. Myristoylated alanine-rich C-kinase substrate (MARCKS) family: Gene IDs: 65108.
  54. Nuclear hormone receptor family: Gene IDs: 8431.
  55. Opsin family
  56. Osteocalcin family: Gene IDs: 4256.
  57. Pentraxin family: Gene IDs:1401.
  58. Peptidase family: Gene IDs: 1215, 4316, 4319, 4321, 4322, 5225.
  59. Peroxidase family: Gene IDs: 8288.
  60. Phosphotransferase family: Gene IDs: 1152.
  61. Platelet-derived growth factors: Gene IDs: 1490, 5155.
  62. Proteoglycan family: Gene IDs: 1833.
  63. Quinone family: Gene IDs: 1728.
  64. RasGEF domain family: Gene IDs: 153020.
  65. RAD/GEM family: Gene IDs: 2669.
  66. Retinoic acid family: Gene IDs: 1382.
  67. Secretoglobin family: Gene IDs: 117158.
  68. Selenium-binding family: Gene IDs: 8991.
  69. Serine protease family: Gene IDs: 1990, 5645, 5650.
  70. Small GTPase superfamily: Gene IDs: 390.
  71. Small integral membrane protein with six bilayer spanning domains that functions as a water channel: Gene IDs: 358.
  72. Solute carrier family: Gene IDs: 84889.
  73. Somatotropin/prolactin family: Gene IDs: 2688.
  74. Transforming growth factor superfamily
  75. Tumor necrosis factor family: Gene IDs: 4049.
  76. VEGFR family: Gene IDs: 2321.
  77. Voltage-dependent chloride channel family: Gene IDs: 1180.
  78. Voltage-gated chloride channel family: Gene IDs: 1188.

Superfamilies of genes

  1. Superfamily of extracellular matrix proteins: Amelogenin family.
  2. ATP-binding cassette transporter superfamily: Gene ID: 19, 10057.
  3. Crystallin superfamily: Gene IDs: 1411.
  4. Cytokine superfamily: Gene IDs: 1440.
  5. Growth factor superfamily: Gene IDs: .
  6. Insulin superfamily: Gene IDs: 3640.
  7. Intermediate filament (IF) protein superfamily: Keratin family.
  8. Lectins superfamily: Gene IDs: 653509.
  9. Serine protease inhibitor superfamily: Gene IDs: 183, 5054, 5055, 5275.
  10. Stem cell homeostasis: Gene IDs: 80177.
  11. Steroid-thyroid hormone-retinoid receptor superfamily: Gene IDs: 3164.
  12. Structural constituent of cytoskeleton: Gene IDs: 84790.
  13. Troponin superfamily: Gene IDs: 794.

Undesignated families of genes

  1. Activity against gram-positive bacteria and yeasts: Gene IDs: 116842.
  2. Adenylate kinase: Gene IDs: 203.
  3. Apolipoprotein (apo-) A-II: Gene IDs: 336.
  4. Apolipoprotein of chylomicrons and low density lipoproteins (LDL): Gene IDs: 338.
  5. Polyamine biosynthesis: Gene IDs: 262.
  6. Protease inhibitor and cytokine transporter: Gene IDs: 2.
  7. Proton channel activity: Gene IDs: 92736.
  8. Proton transmembrane transport: Gene IDs: 92736.
  9. Receptor for monocyte chemoattractant protein-1: Gene IDs: 729230.
  10. Regenerating islet-derived genes (REG)3 family: Gene IDs:130120.
  11. Regulate host inflammation and immunity: Gene IDs: 84419.
  12. Regulation of cytokine production: Gene IDs: 114899.
  13. Regulation of transcription: Gene IDs: 81606.
  14. Regulator of aldosterone secretion: Gene IDs: 185.
  15. Vasodilation, regulation of hormone secretion, promotion of angiogenesis, and antimicrobial activity: Gene IDs: 133.
  16. ZIC family of C2H2-type zinc fingers: Gene IDs: 84107.
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