EIF6: Difference between revisions

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{{Infobox_gene}}
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'''Eukaryotic translation initiation factor 6''' ('''EIF6'''), also known as '''Integrin beta 4 binding protein''' ('''ITGB4BP'''), is a human [[gene]].<ref name="entrez"/>
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<!-- The GNF_Protein_box is automatically maintained by Protein Box Bot.  See Template:PBB_Controls to Stop updates. -->
[[Hemidesmosome]]s are structures which link the [[basal lamina]] to the intermediate filament [[cytoskeleton]]. An important functional component of hemidesmosomes is the integrin beta-4 subunit ([[ITGB4]]), a protein containing two fibronectin type III domains. The protein encoded by this gene binds to the fibronectin type III domains of ITGB4 and may help link ITGB4 to the intermediate filament cytoskeleton. The encoded protein, which is insoluble and found both in the [[Cell nucleus|nucleus]] and in the [[cytoplasm]], can function as a [[eukaryotic initiation factor|translation initiation factor]] and catalyzes the association of the [[40S]] and [[60S]] [[ribosome|ribosomal]] subunits along with eIF5 bound to GTP. Multiple transcript variants encoding several different [[protein isoform|isoforms]] have been found for this gene.<ref name="entrez">{{cite web | title = Entrez Gene: ITGB4BP integrin beta 4 binding protein| url = https://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=3692| accessdate = }}</ref>
{{GNF_Protein_box
| image = 
| image_source = 
| PDB =
| Name = Integrin beta 4 binding protein
| HGNCid = 6159
| Symbol = ITGB4BP
| AltSymbols =; CAB; EIF3A; EIF6; b(2)gcn; p27BBP
| OMIM = 602912
| ECnumber = 
| Homologene = 7135
| MGIid = 1196288
| GeneAtlas_image1 = PBB_GE_ITGB4BP_210213_s_at_tn.png
| GeneAtlas_image2 = PBB_GE_ITGB4BP_78047_s_at_tn.png
| Function = {{GNF_GO|id=GO:0003743 |text = translation initiation factor activity}} {{GNF_GO|id=GO:0005515 |text = protein binding}} {{GNF_GO|id=GO:0043022 |text = ribosome binding}}
| Component = {{GNF_GO|id=GO:0005634 |text = nucleus}} {{GNF_GO|id=GO:0005638 |text = lamin filament}}
| Process = {{GNF_GO|id=GO:0006412 |text = translation}} {{GNF_GO|id=GO:0007229 |text = integrin-mediated signaling pathway}} {{GNF_GO|id=GO:0042256 |text = mature ribosome assembly}}
| Orthologs = {{GNF_Ortholog_box
    | Hs_EntrezGene = 3692
    | Hs_Ensembl = ENSG00000126005
    | Hs_RefseqProtein = NP_002203
    | Hs_RefseqmRNA = NM_002212
    | Hs_GenLoc_db = 
    | Hs_GenLoc_chr = 20
    | Hs_GenLoc_start = 33330128
    | Hs_GenLoc_end = 33336202
    | Hs_Uniprot = P56537
    | Mm_EntrezGene = 16418
    | Mm_Ensembl = ENSMUSG00000027613
    | Mm_RefseqmRNA = NM_010579
    | Mm_RefseqProtein = NP_034709
    | Mm_GenLoc_db = 
    | Mm_GenLoc_chr = 2
    | Mm_GenLoc_start = 155511278
    | Mm_GenLoc_end = 155518366
    | Mm_Uniprot = Q3U740
  }}
}}
'''Integrin beta 4 binding protein''', also known as '''ITGB4BP''', is a human [[gene]].<ref name="entrez">{{cite web | title = Entrez Gene: ITGB4BP integrin beta 4 binding protein| url = http://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=3692| accessdate = }}</ref>


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==Interactions==
{{PBB_Summary
EIF6 has been shown to [[Protein-protein interaction|interact]] with [[FHL2]],<ref name=pmid10906324>{{cite journal |last=Wixler |first=V |author2=Geerts D |author3=Laplantine E |author4=Westhoff D |author5=Smyth N |author6=Aumailley M |author7=Sonnenberg A |author8=Paulsson M  |date=October 2000  |title=The LIM-only protein DRAL/FHL2 binds to the cytoplasmic domain of several alpha and beta integrin chains and is recruited to adhesion complexes |journal=J. Biol. Chem. |volume=275 |issue=43 |pages=33669–78 |publisher= |location = UNITED STATES| issn = 0021-9258| pmid = 10906324 |doi = 10.1074/jbc.M002519200 | bibcode = | oclc =| id = | url = | language = | format = | accessdate = | laysummary = | laysource = | laydate = | quote = }}</ref> [[ITGB4]]<ref name=pmid9374518>{{cite journal |last=Biffo |first=S |author2=Sanvito F |author3=Costa S |author4=Preve L |author5=Pignatelli R |author6=Spinardi L |author7=Marchisio P C  |date=November 1997  |title=Isolation of a novel beta4 integrin-binding protein (p27(BBP)) highly expressed in epithelial cells |journal=J. Biol. Chem. |volume=272 |issue=48 |pages=30314–21 |publisher= |location = UNITED STATES| issn = 0021-9258| pmid = 9374518 | bibcode = | oclc =| id = | url = | language = | format = | accessdate = | laysummary = | laysource = | laydate = | quote = |doi=10.1074/jbc.272.48.30314 }}</ref> and [[GNB2L1]].<ref name=pmid14654845>{{cite journal |last=Ceci |first=Marcello |author2=Gaviraghi Cristina |author3=Gorrini Chiara |author4=Sala Leonardo A |author5=Offenhäuser Nina |author6=Marchisio Pier Carlo |author7=Biffo Stefano  |date=December 2003  |title=Release of eIF6 (p27BBP) from the 60S subunit allows 80S ribosome assembly |journal=[[Nature (journal)|Nature]] |volume=426 |issue=6966 |pages=579–84 |publisher= |location = England| issn = | pmid = 14654845 |doi = 10.1038/nature02160 | bibcode = | oclc =| id = | url = | language = | format = | accessdate = | laysummary = | laysource = | laydate = | quote = }}</ref>
| section_title =  
| summary_text = Hemidesmosomes are structures which link the basal lamina to the intermediate filament cytoskeleton. An important functional component of hemidesmosomes is the integrin beta-4 subunit (ITGB4), a protein containing two fibronectin type III domains. The protein encoded by this gene binds to the fibronectin type III domains of ITGB4 and may help link ITGB4 to the intermediate filament cytoskeleton. The encoded protein, which is insoluble and found both in the nucleus and in the cytoplasm, can function as a translation initiation factor and prevent the association of the 40S and 60S ribosomal subunits. Multiple transcript variants encoding several different isoforms have been found for this gene.<ref name="entrez">{{cite web | title = Entrez Gene: ITGB4BP integrin beta 4 binding protein| url = http://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=3692| accessdate = }}</ref>
}}


==References==
==References==
{{reflist|2}}
{{reflist}}
 
==Further reading==
==Further reading==
{{refbegin | 2}}
{{refbegin | 2}}
{{PBB_Further_reading  
{{PBB_Further_reading  
| citations =  
| citations =  
*{{cite journal  | author=Biffo S, Sanvito F, Costa S, ''et al.'' |title=Isolation of a novel beta4 integrin-binding protein (p27(BBP)) highly expressed in epithelial cells. |journal=J. Biol. Chem. |volume=272 |issue= 48 |pages= 30314-21 |year= 1997 |pmid= 9374518 |doi=  }}
*{{cite journal  | vauthors=Biffo S, Sanvito F, Costa S |title=Isolation of a novel beta4 integrin-binding protein (p27(BBP)) highly expressed in epithelial cells |journal=J. Biol. Chem. |volume=272 |issue= 48 |pages= 30314–21 |year= 1997 |pmid= 9374518 |doi=10.1074/jbc.272.48.30314 |display-authors=etal}}
*{{cite journal  | author=Si K, Chaudhuri J, Chevesich J, Maitra U |title=Molecular cloning and functional expression of a human cDNA encoding translation initiation factor 6. |journal=Proc. Natl. Acad. Sci. U.S.A. |volume=94 |issue= 26 |pages= 14285-90 |year= 1998 |pmid= 9405604 |doi= }}
*{{cite journal  | vauthors=Si K, Chaudhuri J, Chevesich J, Maitra U |title=Molecular cloning and functional expression of a human cDNA encoding translation initiation factor 6 |journal=Proc. Natl. Acad. Sci. U.S.A. |volume=94 |issue= 26 |pages= 14285–90 |year= 1998 |pmid= 9405604 |doi=10.1073/pnas.94.26.14285  | pmc=24943  }}
*{{cite journal  | author=Mao M, Fu G, Wu JS, ''et al.'' |title=Identification of genes expressed in human CD34(+) hematopoietic stem/progenitor cells by expressed sequence tags and efficient full-length cDNA cloning. |journal=Proc. Natl. Acad. Sci. U.S.A. |volume=95 |issue= 14 |pages= 8175-80 |year= 1998 |pmid= 9653160 |doi= }}
*{{cite journal  | vauthors=Mao M, Fu G, Wu JS |title=Identification of genes expressed in human CD34+ hematopoietic stem/progenitor cells by expressed sequence tags and efficient full-length cDNA cloning |journal=Proc. Natl. Acad. Sci. U.S.A. |volume=95 |issue= 14 |pages= 8175–80 |year= 1998 |pmid= 9653160 |doi=10.1073/pnas.95.14.8175  | pmc=20949  |display-authors=etal}}
*{{cite journal  | author=Sanvito F, Arrigo G, Zuffardi O, ''et al.'' |title=Localization of p27 beta4 binding protein gene (ITGB4BP) to human chromosome region 20q11.2  |journal= |volume=52 |issue= 1 |pages= 111-2 |year=  |pmid= 9740680 |doi= 10.1006/geno.1998.5403 }}
*{{cite journal  | vauthors=Sanvito F, Arrigo G, Zuffardi O |title=Localization of p27 beta4 binding protein gene (ITGB4BP) to human chromosome region 20q11.2  |journal= Genomics|volume=52 |issue= 1 |pages= 111–2 |year=  1998|pmid= 9740680 |doi= 10.1006/geno.1998.5403 |display-authors=etal}}
*{{cite journal  | author=Sanvito F, Piatti S, Villa A, ''et al.'' |title=The beta4 integrin interactor p27(BBP/eIF6) is an essential nuclear matrix protein involved in 60S ribosomal subunit assembly. |journal=J. Cell Biol. |volume=144 |issue= 5 |pages= 823-37 |year= 1999 |pmid= 10085284 |doi=  }}
*{{cite journal  | vauthors=Sanvito F, Piatti S, Villa A |title=The β4 Integrin Interactor p27BBP/eIF6 Is an Essential Nuclear Matrix Protein Involved in 60S Ribosomal Subunit Assembly |journal=J. Cell Biol. |volume=144 |issue= 5 |pages= 823–37 |year= 1999 |pmid= 10085284 |doi=10.1083/jcb.144.5.823 | pmc=2148184  |display-authors=etal}}
*{{cite journal  | author=Sanvito F, Arrigo G, Zuffardi O, ''et al.'' |title=Localization of p27 beta 4 binding protein gene (ITGB4BP) to human chromosome region 20q11.2. |journal=Genomics |volume=52 |issue= 1 |pages= 111-2 |year= 1999 |pmid= 10348637 |doi= }}
*{{cite journal  | vauthors=Wixler V, Geerts D, Laplantine E |title=The LIM-only protein DRAL/FHL2 binds to the cytoplasmic domain of several alpha and beta integrin chains and is recruited to adhesion complexes |journal=J. Biol. Chem. |volume=275 |issue= 43 |pages= 33669–78 |year= 2000 |pmid= 10906324 |doi= 10.1074/jbc.M002519200 |display-authors=etal}}
*{{cite journal  | author=Wixler V, Geerts D, Laplantine E, ''et al.'' |title=The LIM-only protein DRAL/FHL2 binds to the cytoplasmic domain of several alpha and beta integrin chains and is recruited to adhesion complexes. |journal=J. Biol. Chem. |volume=275 |issue= 43 |pages= 33669-78 |year= 2000 |pmid= 10906324 |doi= 10.1074/jbc.M002519200 }}
*{{cite journal  | vauthors=Zhang QH, Ye M, Wu XY |title=Cloning and Functional Analysis of cDNAs with Open Reading Frames for 300 Previously Undefined Genes Expressed in CD34+ Hematopoietic Stem/Progenitor Cells |journal=Genome Res. |volume=10 |issue= 10 |pages= 1546–60 |year= 2001 |pmid= 11042152 |doi=10.1101/gr.140200  | pmc=310934  |display-authors=etal}}
*{{cite journal  | author=Zhang QH, Ye M, Wu XY, ''et al.'' |title=Cloning and functional analysis of cDNAs with open reading frames for 300 previously undefined genes expressed in CD34+ hematopoietic stem/progenitor cells. |journal=Genome Res. |volume=10 |issue= 10 |pages= 1546-60 |year= 2001 |pmid= 11042152 |doi= }}
*{{cite journal  | vauthors=Donadini A, Giodini A, Sanvito F |title=The human ITGB4BP gene is constitutively expressed in vitro, but highly modulated in vivo |journal=Gene |volume=266 |issue= 1–2 |pages= 35–43 |year= 2001 |pmid= 11290417 |doi=10.1016/S0378-1119(01)00370-5  |display-authors=etal}}
*{{cite journal  | author=Donadini A, Giodini A, Sanvito F, ''et al.'' |title=The human ITGB4BP gene is constitutively expressed in vitro, but highly modulated in vivo. |journal=Gene |volume=266 |issue= 1-2 |pages= 35-43 |year= 2001 |pmid= 11290417 |doi= }}
*{{cite journal  | vauthors=Deloukas P, Matthews LH, Ashurst J |title=The DNA sequence and comparative analysis of human chromosome 20 |journal=Nature |volume=414 |issue= 6866 |pages= 865–71 |year= 2002 |pmid= 11780052 |doi= 10.1038/414865a |display-authors=etal}}
*{{cite journal  | author=Deloukas P, Matthews LH, Ashurst J, ''et al.'' |title=The DNA sequence and comparative analysis of human chromosome 20. |journal=Nature |volume=414 |issue= 6866 |pages= 865-71 |year= 2002 |pmid= 11780052 |doi= 10.1038/414865a }}
*{{cite journal  | vauthors=Andersen JS, Lyon CE, Fox AH |title=Directed proteomic analysis of the human nucleolus |journal=Curr. Biol. |volume=12 |issue= 1 |pages= 1–11 |year= 2002 |pmid= 11790298 |doi=10.1016/S0960-9822(01)00650-9  |display-authors=etal}}
*{{cite journal  | author=Andersen JS, Lyon CE, Fox AH, ''et al.'' |title=Directed proteomic analysis of the human nucleolus. |journal=Curr. Biol. |volume=12 |issue= 1 |pages= 1-11 |year= 2002 |pmid= 11790298 |doi= }}
*{{cite journal  | vauthors=Strausberg RL, Feingold EA, Grouse LH |title=Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences |journal=Proc. Natl. Acad. Sci. U.S.A. |volume=99 |issue= 26 |pages= 16899–903 |year= 2003 |pmid= 12477932 |doi= 10.1073/pnas.242603899  | pmc=139241 |display-authors=etal}}
*{{cite journal  | author=Strausberg RL, Feingold EA, Grouse LH, ''et al.'' |title=Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. |journal=Proc. Natl. Acad. Sci. U.S.A. |volume=99 |issue= 26 |pages= 16899-903 |year= 2003 |pmid= 12477932 |doi= 10.1073/pnas.242603899 }}
*{{cite journal  | vauthors=Basu U, Si K, Deng H, Maitra U |title=Phosphorylation of Mammalian Eukaryotic Translation Initiation Factor 6 and Its Saccharomyces cerevisiae Homologue Tif6p: Evidence that Phosphorylation of Tif6p Regulates Its Nucleocytoplasmic Distribution and Is Required for Yeast Cell Growth |journal=Mol. Cell. Biol. |volume=23 |issue= 17 |pages= 6187–99 |year= 2003 |pmid= 12917340 |doi=10.1128/MCB.23.17.6187-6199.2003  | pmc=180954  }}
*{{cite journal  | author=Basu U, Si K, Deng H, Maitra U |title=Phosphorylation of mammalian eukaryotic translation initiation factor 6 and its Saccharomyces cerevisiae homologue Tif6p: evidence that phosphorylation of Tif6p regulates its nucleocytoplasmic distribution and is required for yeast cell growth. |journal=Mol. Cell. Biol. |volume=23 |issue= 17 |pages= 6187-99 |year= 2003 |pmid= 12917340 |doi= }}
*{{cite journal  | vauthors=Ceci M, Gaviraghi C, Gorrini C |title=Release of eIF6 (p27BBP) from the 60S subunit allows 80S ribosome assembly |journal=Nature |volume=426 |issue= 6966 |pages= 579–84 |year= 2003 |pmid= 14654845 |doi= 10.1038/nature02160 |display-authors=etal}}
*{{cite journal  | author=Ceci M, Gaviraghi C, Gorrini C, ''et al.'' |title=Release of eIF6 (p27BBP) from the 60S subunit allows 80S ribosome assembly. |journal=Nature |volume=426 |issue= 6966 |pages= 579-84 |year= 2003 |pmid= 14654845 |doi= 10.1038/nature02160 }}
*{{cite journal  | vauthors=Rosso P, Cortesina G, Sanvito F |title=Overexpression of p27BBP in head and neck carcinomas and their lymph node metastases |journal=Head Neck |volume=26 |issue= 5 |pages= 408–17 |year= 2004 |pmid= 15122657 |doi= 10.1002/hed.10401 |display-authors=etal}}
*{{cite journal  | author=Rosso P, Cortesina G, Sanvito F, ''et al.'' |title=Overexpression of p27BBP in head and neck carcinomas and their lymph node metastases. |journal=Head Neck |volume=26 |issue= 5 |pages= 408-17 |year= 2004 |pmid= 15122657 |doi= 10.1002/hed.10401 }}
*{{cite journal  | vauthors=Lehner B, Sanderson CM |title=A Protein Interaction Framework for Human mRNA Degradation |journal=Genome Res. |volume=14 |issue= 7 |pages= 1315–23 |year= 2004 |pmid= 15231747 |doi= 10.1101/gr.2122004  | pmc=442147 }}
*{{cite journal  | author=Lehner B, Sanderson CM |title=A protein interaction framework for human mRNA degradation. |journal=Genome Res. |volume=14 |issue= 7 |pages= 1315-23 |year= 2004 |pmid= 15231747 |doi= 10.1101/gr.2122004 }}
*{{cite journal  | vauthors=Gerhard DS, Wagner L, Feingold EA |title=The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC) |journal=Genome Res. |volume=14 |issue= 10B |pages= 2121–7 |year= 2004 |pmid= 15489334 |doi= 10.1101/gr.2596504  | pmc=528928 |display-authors=etal}}
*{{cite journal  | author=Gerhard DS, Wagner L, Feingold EA, ''et al.'' |title=The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). |journal=Genome Res. |volume=14 |issue= 10B |pages= 2121-7 |year= 2004 |pmid= 15489334 |doi= 10.1101/gr.2596504 }}
*{{cite journal  | vauthors=Rush J, Moritz A, Lee KA |title=Immunoaffinity profiling of tyrosine phosphorylation in cancer cells |journal=Nat. Biotechnol. |volume=23 |issue= 1 |pages= 94–101 |year= 2005 |pmid= 15592455 |doi= 10.1038/nbt1046 |display-authors=etal}}
*{{cite journal  | author=Rush J, Moritz A, Lee KA, ''et al.'' |title=Immunoaffinity profiling of tyrosine phosphorylation in cancer cells. |journal=Nat. Biotechnol. |volume=23 |issue= 1 |pages= 94-101 |year= 2005 |pmid= 15592455 |doi= 10.1038/nbt1046 }}
*{{cite journal  | vauthors=Andersen JS, Lam YW, Leung AK |title=Nucleolar proteome dynamics |journal=Nature |volume=433 |issue= 7021 |pages= 77–83 |year= 2005 |pmid= 15635413 |doi= 10.1038/nature03207 |display-authors=etal}}
*{{cite journal  | author=Andersen JS, Lam YW, Leung AK, ''et al.'' |title=Nucleolar proteome dynamics. |journal=Nature |volume=433 |issue= 7021 |pages= 77-83 |year= 2005 |pmid= 15635413 |doi= 10.1038/nature03207 }}
*{{cite journal  | vauthors=Stelzl U, Worm U, Lalowski M |title=A human protein-protein interaction network: a resource for annotating the proteome |journal=Cell |volume=122 |issue= 6 |pages= 957–68 |year= 2005 |pmid= 16169070 |doi= 10.1016/j.cell.2005.08.029 |display-authors=etal}}
*{{cite journal  | author=Stelzl U, Worm U, Lalowski M, ''et al.'' |title=A human protein-protein interaction network: a resource for annotating the proteome. |journal=Cell |volume=122 |issue= 6 |pages= 957-68 |year= 2005 |pmid= 16169070 |doi= 10.1016/j.cell.2005.08.029 }}
}}
}}
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{{protein-stub}}
{{Initiation factors}}
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Revision as of 00:26, 31 August 2017

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Identifiers
Aliases
External IDsGeneCards: [1]
Orthologs
SpeciesHumanMouse
Entrez

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Ensembl

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View/Edit Human

Eukaryotic translation initiation factor 6 (EIF6), also known as Integrin beta 4 binding protein (ITGB4BP), is a human gene.[1]

Hemidesmosomes are structures which link the basal lamina to the intermediate filament cytoskeleton. An important functional component of hemidesmosomes is the integrin beta-4 subunit (ITGB4), a protein containing two fibronectin type III domains. The protein encoded by this gene binds to the fibronectin type III domains of ITGB4 and may help link ITGB4 to the intermediate filament cytoskeleton. The encoded protein, which is insoluble and found both in the nucleus and in the cytoplasm, can function as a translation initiation factor and catalyzes the association of the 40S and 60S ribosomal subunits along with eIF5 bound to GTP. Multiple transcript variants encoding several different isoforms have been found for this gene.[1]

Interactions

EIF6 has been shown to interact with FHL2,[2] ITGB4[3] and GNB2L1.[4]

References

  1. ↑ 1.0 1.1 "Entrez Gene: ITGB4BP integrin beta 4 binding protein".
  2. ↑ Wixler, V; Geerts D; Laplantine E; Westhoff D; Smyth N; Aumailley M; Sonnenberg A; Paulsson M (October 2000). "The LIM-only protein DRAL/FHL2 binds to the cytoplasmic domain of several alpha and beta integrin chains and is recruited to adhesion complexes". J. Biol. Chem. UNITED STATES. 275 (43): 33669–78. doi:10.1074/jbc.M002519200. ISSN 0021-9258. PMID 10906324.
  3. ↑ Biffo, S; Sanvito F; Costa S; Preve L; Pignatelli R; Spinardi L; Marchisio P C (November 1997). "Isolation of a novel beta4 integrin-binding protein (p27(BBP)) highly expressed in epithelial cells". J. Biol. Chem. UNITED STATES. 272 (48): 30314–21. doi:10.1074/jbc.272.48.30314. ISSN 0021-9258. PMID 9374518.
  4. ↑ Ceci, Marcello; Gaviraghi Cristina; Gorrini Chiara; Sala Leonardo A; Offenhäuser Nina; Marchisio Pier Carlo; Biffo Stefano (December 2003). "Release of eIF6 (p27BBP) from the 60S subunit allows 80S ribosome assembly". Nature. England. 426 (6966): 579–84. doi:10.1038/nature02160. PMID 14654845.

Further reading



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