CLCA1: Difference between revisions
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{{ | '''Chloride channel accessory 1''' is a [[protein]] that in humans is encoded by the ''CLCA1'' [[gene]].<ref name="pmid9828122">{{cite journal | vauthors = Gruber AD, Elble RC, Ji HL, Schreur KD, Fuller CM, Pauli BU | title = Genomic cloning, molecular characterization, and functional analysis of human CLCA1, the first human member of the family of Ca<sup>2+</sup>-activated Cl<sup>−</sup> channel proteins | journal = Genomics | volume = 54 | issue = 2 | pages = 200–14 |date=Jan 1999 | pmid = 9828122 | pmc = | doi = 10.1006/geno.1998.5562 }}</ref><ref name="entrez" /> | ||
}} | |||
'''Chloride channel | |||
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| summary_text = This gene encodes a member of the calcium sensitive chloride conductance protein family. To date, all members of this gene family map to the same region on chromosome 1p31-p22 and share a high degree of homology in size, sequence, and predicted structure, but differ significantly in their tissue distributions. The encoded protein is expressed as a precursor protein that is processed into two cell-surface-associated subunits, although the site at which the precursor is cleaved has not been precisely determined. The encoded protein may be involved in mediating calcium-activated chloride conductance in the intestine.<ref name="entrez">{{cite web | title = Entrez Gene: CLCA1 chloride channel, calcium activated, family member 1| url = | | summary_text = This gene encodes a member of the calcium sensitive chloride conductance protein family. To date, all members of this gene family map to the same region on chromosome 1p31-p22 and share a high degree of homology in size, sequence, and predicted structure, but differ significantly in their tissue distributions. The encoded protein is expressed as a precursor protein that is processed into two cell-surface-associated subunits, although the site at which the precursor is cleaved has not been precisely determined. The encoded protein may be involved in mediating calcium-activated chloride conductance in the intestine.<ref name="entrez">{{cite web | title = Entrez Gene: CLCA1 chloride channel, calcium activated, family member 1| url = https://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=1179| accessdate = }}</ref> Protein structure prediction methods suggest the N-terminal region of CLCA1 protein is a zinc [[metalloprotease]].<ref name="pmid16470849">{{cite journal | vauthors=Pawłowski K, Lepistö M, Meinander N |title=Novel conserved hydrolase domain in the CLCA family of alleged calcium-activated chloride channels |journal=Proteins |volume=63 |issue= 3 |pages= 424–39 |year= 2006 |pmid= 16470849|doi= 10.1002/prot.20887|display-authors=etal}}</ref> | ||
}} | }} | ||
==See also== | |||
* [[Chloride channel]] | |||
==References== | ==References== | ||
{{reflist | {{reflist}} | ||
==Further reading== | ==Further reading== | ||
{{refbegin | 2}} | {{refbegin | 2}} | ||
{{PBB_Further_reading | {{PBB_Further_reading | ||
| citations = | | citations = | ||
*{{cite journal | *{{cite journal | vauthors=Hume JR, Duan D, Collier ML |title=Anion transport in heart |journal=Physiol. Rev. |volume=80 |issue= 1 |pages= 31–81 |year= 2000 |pmid= 10617765 |doi= |display-authors=etal}} | ||
*{{cite journal | *{{cite journal | vauthors=Pauli BU, Abdel-Ghany M, Cheng HC |title=Molecular characteristics and functional diversity of CLCA family members |journal=Clin. Exp. Pharmacol. Physiol. |volume=27 |issue= 11 |pages= 901–5 |year= 2001 |pmid= 11071307 |doi=10.1046/j.1440-1681.2000.03358.x |display-authors=etal}} | ||
*{{cite journal | vauthors=Agnel M, Vermat T, Culouscou JM |title=Identification of three novel members of the calcium-dependent chloride channel (CaCC) family predominantly expressed in the digestive tract and trachea |journal=FEBS Lett. |volume=455 |issue= 3 |pages= 295–301 |year= 1999 |pmid= 10437792 |doi=10.1016/S0014-5793(99)00891-1 }} | |||
*{{cite journal | *{{cite journal | vauthors=Dias Neto E, Correa RG, Verjovski-Almeida S |title=Shotgun sequencing of the human transcriptome with ORF expressed sequence tags |journal=Proc. Natl. Acad. Sci. U.S.A. |volume=97 |issue= 7 |pages= 3491–6 |year= 2000 |pmid= 10737800 |doi=10.1073/pnas.97.7.3491 | pmc=16267 |display-authors=etal}} | ||
*{{cite journal | *{{cite journal | vauthors=Liu QH, Williams DA, McManus C |title=HIV-1 gp120 and chemokines activate ion channels in primary macrophages through CCR5 and CXCR4 stimulation |journal=Proc. Natl. Acad. Sci. U.S.A. |volume=97 |issue= 9 |pages= 4832–7 |year= 2000 |pmid= 10758170 |doi= 10.1073/pnas.090521697 | pmc=18318 |display-authors=etal}} | ||
*{{cite journal | *{{cite journal | vauthors=Toda M, Tulic MK, Levitt RC, Hamid Q |title=A calcium-activated chloride channel (HCLCA1) is strongly related to IL-9 expression and mucus production in bronchial epithelium of patients with asthma |journal=J. Allergy Clin. Immunol. |volume=109 |issue= 2 |pages= 246–50 |year= 2002 |pmid= 11842292 |doi=10.1067/mai.2002.121555 }} | ||
*{{cite journal | *{{cite journal | vauthors=Greenwood IA, Miller LJ, Ohya S, Horowitz B |title=The large conductance potassium channel beta-subunit can interact with and modulate the functional properties of a calcium-activated chloride channel, CLCA1 |journal=J. Biol. Chem. |volume=277 |issue= 25 |pages= 22119–22 |year= 2002 |pmid= 11994272 |doi= 10.1074/jbc.C200215200 }} | ||
*{{cite journal | *{{cite journal | vauthors=Abdel-Ghany M, Cheng HC, Elble RC, Pauli BU |title=Focal adhesion kinase activated by beta(4) integrin ligation to mCLCA1 mediates early metastatic growth |journal=J. Biol. Chem. |volume=277 |issue= 37 |pages= 34391–400 |year= 2002 |pmid= 12110680 |doi= 10.1074/jbc.M205307200 }} | ||
*{{cite journal | *{{cite journal | vauthors=Loewen ME, Bekar LK, Gabriel SE |title=pCLCA1 becomes a cAMP-dependent chloride conductance mediator in Caco-2 cells |journal=Biochem. Biophys. Res. Commun. |volume=298 |issue= 4 |pages= 531–6 |year= 2002 |pmid= 12408984 |doi=10.1016/S0006-291X(02)02498-1 |display-authors=etal}} | ||
*{{cite journal | *{{cite journal | vauthors=Zhou Y, Shapiro M, Dong Q |title=A calcium-activated chloride channel blocker inhibits goblet cell metaplasia and mucus overproduction |journal=Novartis Found. Symp. |volume=248 |issue= |pages= 150–65; discussion 165–70, 277–82 |year= 2003 |pmid= 12568493 |doi=10.1002/0470860790.ch10 |display-authors=etal}} | ||
*{{cite journal | *{{cite journal | vauthors=Abdel-Ghany M, Cheng HC, Elble RC |title=The interacting binding domains of the beta(4) integrin and calcium-activated chloride channels (CLCAs) in metastasis |journal=J. Biol. Chem. |volume=278 |issue= 49 |pages= 49406–16 |year= 2004 |pmid= 14512419 |doi= 10.1074/jbc.M309086200 |display-authors=etal}} | ||
*{{cite journal | *{{cite journal | vauthors=Ota T, Suzuki Y, Nishikawa T |title=Complete sequencing and characterization of 21,243 full-length human cDNAs |journal=Nat. Genet. |volume=36 |issue= 1 |pages= 40–5 |year= 2004 |pmid= 14702039 |doi= 10.1038/ng1285 |display-authors=etal}} | ||
*{{cite journal | *{{cite journal | vauthors=Hegab AE, Sakamoto T, Uchida Y |title=CLCA1 gene polymorphisms in chronic obstructive pulmonary disease |journal=J. Med. Genet. |volume=41 |issue= 3 |pages= e27 |year= 2004 |pmid= 14985398 |doi=10.1136/jmg.2003.012484 | pmc=1735703 |display-authors=etal}} | ||
*{{cite journal | *{{cite journal | vauthors=Kamada F, Suzuki Y, Shao C |title=Association of the hCLCA1 gene with childhood and adult asthma |journal=Genes Immun. |volume=5 |issue= 7 |pages= 540–7 |year= 2005 |pmid= 15318163 |doi= 10.1038/sj.gene.6364124 |display-authors=etal}} | ||
*{{cite journal | *{{cite journal | vauthors=Ritzka M, Stanke F, Jansen S |title=The CLCA gene locus as a modulator of the gastrointestinal basic defect in cystic fibrosis |journal=Hum. Genet. |volume=115 |issue= 6 |pages= 483–91 |year= 2005 |pmid= 15490240 |doi= 10.1007/s00439-004-1190-y |display-authors=etal}} | ||
*{{cite journal | *{{cite journal | vauthors=Gibson A, Lewis AP, Affleck K |title=hCLCA1 and mCLCA3 are secreted non-integral membrane proteins and therefore are not ion channels |journal=J. Biol. Chem. |volume=280 |issue= 29 |pages= 27205–12 |year= 2005 |pmid= 15919655 |doi= 10.1074/jbc.M504654200 |display-authors=etal}} | ||
*{{cite journal | *{{cite journal | vauthors=Jeong SM, Park HK, Yoon IS |title=Cloning and expression of Ca<sup>2+</sup>-activated chloride channel from rat brain |journal=Biochem. Biophys. Res. Commun. |volume=334 |issue= 2 |pages= 569–76 |year= 2005 |pmid= 16023076 |doi= 10.1016/j.bbrc.2005.06.122 |display-authors=etal}} | ||
*{{cite journal | |||
}} | }} | ||
{{refend}} | {{refend}} | ||
{{protein- | ==External links== | ||
{{ | * {{MeshName|CLCA1+protein,+human}} | ||
* {{UCSC gene info|CLCA1}} | |||
{{NLM content}} | |||
{{Ion channels|g4}} | |||
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[[Category:Chloride channels]] | |||
{{gene-1-stub}} |
Latest revision as of 02:01, 27 October 2017
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External IDs | GeneCards: [1] | ||||||
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Species | Human | Mouse | |||||
Entrez |
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Ensembl |
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UniProt |
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RefSeq (mRNA) |
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RefSeq (protein) |
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Location (UCSC) | n/a | n/a | |||||
PubMed search | n/a | n/a | |||||
Wikidata | |||||||
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Chloride channel accessory 1 is a protein that in humans is encoded by the CLCA1 gene.[1][2]
This gene encodes a member of the calcium sensitive chloride conductance protein family. To date, all members of this gene family map to the same region on chromosome 1p31-p22 and share a high degree of homology in size, sequence, and predicted structure, but differ significantly in their tissue distributions. The encoded protein is expressed as a precursor protein that is processed into two cell-surface-associated subunits, although the site at which the precursor is cleaved has not been precisely determined. The encoded protein may be involved in mediating calcium-activated chloride conductance in the intestine.[2] Protein structure prediction methods suggest the N-terminal region of CLCA1 protein is a zinc metalloprotease.[3]
See also
References
- ↑ Gruber AD, Elble RC, Ji HL, Schreur KD, Fuller CM, Pauli BU (Jan 1999). "Genomic cloning, molecular characterization, and functional analysis of human CLCA1, the first human member of the family of Ca2+-activated Cl− channel proteins". Genomics. 54 (2): 200–14. doi:10.1006/geno.1998.5562. PMID 9828122.
- ↑ 2.0 2.1 "Entrez Gene: CLCA1 chloride channel, calcium activated, family member 1".
- ↑ Pawłowski K, Lepistö M, Meinander N, et al. (2006). "Novel conserved hydrolase domain in the CLCA family of alleged calcium-activated chloride channels". Proteins. 63 (3): 424–39. doi:10.1002/prot.20887. PMID 16470849.
Further reading
- Hume JR, Duan D, Collier ML, et al. (2000). "Anion transport in heart". Physiol. Rev. 80 (1): 31–81. PMID 10617765.
- Pauli BU, Abdel-Ghany M, Cheng HC, et al. (2001). "Molecular characteristics and functional diversity of CLCA family members". Clin. Exp. Pharmacol. Physiol. 27 (11): 901–5. doi:10.1046/j.1440-1681.2000.03358.x. PMID 11071307.
- Agnel M, Vermat T, Culouscou JM (1999). "Identification of three novel members of the calcium-dependent chloride channel (CaCC) family predominantly expressed in the digestive tract and trachea". FEBS Lett. 455 (3): 295–301. doi:10.1016/S0014-5793(99)00891-1. PMID 10437792.
- Dias Neto E, Correa RG, Verjovski-Almeida S, et al. (2000). "Shotgun sequencing of the human transcriptome with ORF expressed sequence tags". Proc. Natl. Acad. Sci. U.S.A. 97 (7): 3491–6. doi:10.1073/pnas.97.7.3491. PMC 16267. PMID 10737800.
- Liu QH, Williams DA, McManus C, et al. (2000). "HIV-1 gp120 and chemokines activate ion channels in primary macrophages through CCR5 and CXCR4 stimulation". Proc. Natl. Acad. Sci. U.S.A. 97 (9): 4832–7. doi:10.1073/pnas.090521697. PMC 18318. PMID 10758170.
- Toda M, Tulic MK, Levitt RC, Hamid Q (2002). "A calcium-activated chloride channel (HCLCA1) is strongly related to IL-9 expression and mucus production in bronchial epithelium of patients with asthma". J. Allergy Clin. Immunol. 109 (2): 246–50. doi:10.1067/mai.2002.121555. PMID 11842292.
- Greenwood IA, Miller LJ, Ohya S, Horowitz B (2002). "The large conductance potassium channel beta-subunit can interact with and modulate the functional properties of a calcium-activated chloride channel, CLCA1". J. Biol. Chem. 277 (25): 22119–22. doi:10.1074/jbc.C200215200. PMID 11994272.
- Abdel-Ghany M, Cheng HC, Elble RC, Pauli BU (2002). "Focal adhesion kinase activated by beta(4) integrin ligation to mCLCA1 mediates early metastatic growth". J. Biol. Chem. 277 (37): 34391–400. doi:10.1074/jbc.M205307200. PMID 12110680.
- Loewen ME, Bekar LK, Gabriel SE, et al. (2002). "pCLCA1 becomes a cAMP-dependent chloride conductance mediator in Caco-2 cells". Biochem. Biophys. Res. Commun. 298 (4): 531–6. doi:10.1016/S0006-291X(02)02498-1. PMID 12408984.
- Zhou Y, Shapiro M, Dong Q, et al. (2003). "A calcium-activated chloride channel blocker inhibits goblet cell metaplasia and mucus overproduction". Novartis Found. Symp. 248: 150–65, discussion 165–70, 277–82. doi:10.1002/0470860790.ch10. PMID 12568493.
- Abdel-Ghany M, Cheng HC, Elble RC, et al. (2004). "The interacting binding domains of the beta(4) integrin and calcium-activated chloride channels (CLCAs) in metastasis". J. Biol. Chem. 278 (49): 49406–16. doi:10.1074/jbc.M309086200. PMID 14512419.
- Ota T, Suzuki Y, Nishikawa T, et al. (2004). "Complete sequencing and characterization of 21,243 full-length human cDNAs". Nat. Genet. 36 (1): 40–5. doi:10.1038/ng1285. PMID 14702039.
- Hegab AE, Sakamoto T, Uchida Y, et al. (2004). "CLCA1 gene polymorphisms in chronic obstructive pulmonary disease". J. Med. Genet. 41 (3): e27. doi:10.1136/jmg.2003.012484. PMC 1735703. PMID 14985398.
- Kamada F, Suzuki Y, Shao C, et al. (2005). "Association of the hCLCA1 gene with childhood and adult asthma". Genes Immun. 5 (7): 540–7. doi:10.1038/sj.gene.6364124. PMID 15318163.
- Ritzka M, Stanke F, Jansen S, et al. (2005). "The CLCA gene locus as a modulator of the gastrointestinal basic defect in cystic fibrosis". Hum. Genet. 115 (6): 483–91. doi:10.1007/s00439-004-1190-y. PMID 15490240.
- Gibson A, Lewis AP, Affleck K, et al. (2005). "hCLCA1 and mCLCA3 are secreted non-integral membrane proteins and therefore are not ion channels". J. Biol. Chem. 280 (29): 27205–12. doi:10.1074/jbc.M504654200. PMID 15919655.
- Jeong SM, Park HK, Yoon IS, et al. (2005). "Cloning and expression of Ca2+-activated chloride channel from rat brain". Biochem. Biophys. Res. Commun. 334 (2): 569–76. doi:10.1016/j.bbrc.2005.06.122. PMID 16023076.
External links
- CLCA1+protein,+human at the US National Library of Medicine Medical Subject Headings (MeSH)
- Human CLCA1 genome location and CLCA1 gene details page in the UCSC Genome Browser.
This article incorporates text from the United States National Library of Medicine, which is in the public domain.
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