CLIC5: Difference between revisions

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{{Infobox_gene}}
{{Infobox_gene}}
'''Chloride intracellular channel protein 5''' is a [[protein]] that in humans is encoded by the ''CLIC5'' [[gene]].<ref name="pmid10793131">{{cite journal | vauthors = Berryman M, Bretscher A | title = Identification of a Novel Member of the Chloride Intracellular Channel Gene Family (CLIC5) That Associates with the Actin Cytoskeleton of Placental Microvilli | journal = Mol Biol Cell | volume = 11 | issue = 5 | pages = 1509–21 |date=Aug 2000 | pmid = 10793131 | pmc = 14863 | doi = 10.1091/mbc.11.5.1509}}</ref><ref name="entrez">{{cite web | title = Entrez Gene: CLIC5 chloride intracellular channel 5| url = https://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=53405| accessdate = }}</ref>
'''Chloride intracellular channel protein 5''' is a [[protein]] that in humans is encoded by the ''CLIC5'' [[gene]].<ref name="pmid10793131">{{cite journal | vauthors = Berryman M, Bretscher A | title = Identification of a novel member of the chloride intracellular channel gene family (CLIC5) that associates with the actin cytoskeleton of placental microvilli | journal = Molecular Biology of the Cell | volume = 11 | issue = 5 | pages = 1509–21 | date = May 2000 | pmid = 10793131 | pmc = 14863 | doi = 10.1091/mbc.11.5.1509 }}</ref><ref name="entrez">{{cite web | title = Entrez Gene: CLIC5 chloride intracellular channel 5| url = https://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=53405| accessdate = }}</ref>
 
== Expression and localization ==
 
CLIC5 exists in two [[alternative splice]] variants, a smaller CLIC5A and larger CLIC5B protein.
 
CLIC5A is expressed chiefly in the renal [[glomerulus]], specifically in [[podocytes]]. Within the cell, CLIC5A is localized to the [[plasma membrane]] and the [[cytosol]], and associates and is regulated by the [[actin]] [[cytoskeleton]].<ref name="entrez" /> CLIC5A can form ion channels in vitro and its channel activity is regulated by [[actin]], though measurement of its chloride conductance ''in vitro'' suggests that CLIC5A is equally selective for cations and anions.


== Function ==
== Function ==


Chloride intracellular channels are involved in chloride ion transport within various subcellular compartments. CLIC5 specifically associates with the [[cytoskeleton]] of placenta [[microvilli]].<ref name="entrez" /> CLIC5 can form ion channel in bilayers and is regulated by [[actin]].
Although chloride intracellular channel (CLIC) proteins were thought to be involved in ion transport in subcellular compartments, their actual functions suggest their role in diverse cellular and physiological functions including [[apoptosis]] and [[angiogenesis]] in CLIC1.


==See also==
CLIC5A, through its interactions with the [[small GTPase]] [[Rac1]], induces the phosphorylation of [[ezrin]]-moeisin-radixin (ERM) proteins and localized production of the [[phosphoinositide]] phosphatidylinositol-4,5-bisphosphate.<ref name="Al-Momany_2014">{{cite journal | vauthors = Al-Momany A, Li L, Alexander RT, Ballermann BJ | title = Clustered PI(4,5)P₂ accumulation and ezrin phosphorylation in response to CLIC5A | journal = Journal of Cell Science | volume = 127 | issue = Pt 24 | pages = 5164–78 | date = December 2014 | pmid = 25344252 | doi = 10.1242/jcs.147744 }}</ref> These two events activate ezrin, enabling it to couple transmembrane proteins to the actin cytoskeleton, which could represent a mechanism by which podocyte [[foot process]]es form to enable renal filtration.<ref name="Tavasoli_2016">{{cite journal | vauthors = Tavasoli M, Li L, Al-Momany A, Zhu LF, Adam BA, Wang Z, Ballermann BJ | title = The chloride intracellular channel 5A stimulates podocyte Rac1, protecting against hypertension-induced glomerular injury | journal = Kidney International | volume = 89 | issue = 4 | pages = 833–47 | date = April 2016 | pmid = 26924049 | doi = 10.1016/j.kint.2016.01.001 }}</ref>
 
== Clinical relevance ==
 
CLIC5A deficiency in mouse models potentiates glomerular injury in hypertension. In these mice, podocyte foot processes were also more sparse and disperse than in wild-type mice.<ref name="Tavasoli_2016" />
 
== See also ==
* [[Chloride channel]]
* [[Chloride channel]]


==References==
== References ==
{{reflist}}
{{reflist}}


==Further reading==
== Further reading ==
{{refbegin | 2}}
{{refbegin | 2}}
{{PBB_Further_reading
* {{cite journal | vauthors = Singh H | title = Two decades with dimorphic Chloride Intracellular Channels (CLICs) | journal = FEBS Letters | volume = 584 | issue = 10 | pages = 2112–21 | date = May 2010 | pmid = 20226783 | doi = 10.1016/j.febslet.2010.03.013 }}
| citations =
* {{cite journal | vauthors = Maruyama K, Sugano S | title = Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides | journal = Gene | volume = 138 | issue = 1-2 | pages = 171–4 | date = January 1994 | pmid = 8125298 | doi = 10.1016/0378-1119(94)90802-8 }}
*{{cite journal | author=Singh H |title=Two decades with dimorphic Chloride Intracellular Channels (CLICs) |journal=FEBS Letters|volume= 584|issue= 10|pages= 2112–21|year= 2010 |pmid= 20226783 |doi=10.1016/j.febslet.2010.03.013 }}
* {{cite journal | vauthors = Suzuki Y, Yoshitomo-Nakagawa K, Maruyama K, Suyama A, Sugano S | title = Construction and characterization of a full length-enriched and a 5'-end-enriched cDNA library | journal = Gene | volume = 200 | issue = 1-2 | pages = 149–56 | date = October 1997 | pmid = 9373149 | doi = 10.1016/S0378-1119(97)00411-3 }}
*{{cite journal | vauthors=Maruyama K, Sugano S |title=Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides |journal=Gene |volume=138 |issue= 1–2 |pages= 171–4 |year= 1994 |pmid= 8125298 |doi=10.1016/0378-1119(94)90802-8 }}
* {{cite journal | vauthors = Shanks RA, Larocca MC, Berryman M, Edwards JC, Urushidani T, Navarre J, Goldenring JR | title = AKAP350 at the Golgi apparatus. II. Association of AKAP350 with a novel chloride intracellular channel (CLIC) family member | journal = The Journal of Biological Chemistry | volume = 277 | issue = 43 | pages = 40973–80 | date = October 2002 | pmid = 12163479 | doi = 10.1074/jbc.M112277200 }}
*{{cite journal | author=Suzuki Y |title=Construction and characterization of a full length-enriched and a 5'-end-enriched cDNA library |journal=Gene |volume=200 |issue= 1–2 |pages= 149–56 |year= 1997 |pmid= 9373149 |doi=10.1016/S0378-1119(97)00411-3 |name-list-format=vanc| author2=Yoshitomo-Nakagawa K  | author3=Maruyama K  | display-authors=3  | last4=Suyama  | first4=Akira  | last5=Sugano  | first5=Sumio  }}
* {{cite journal | vauthors = Suzuki T, Morita R, Sugimoto Y, Sugawara T, Bai DS, Alonso ME, Medina MT, Bailey JN, Rasmussen A, Ramos-Peek J, Cordova S, Rubio-Donnadieu F, Ochoa A, Jara-Prado A, Inazawa J, Delgado-Escueta AV, Yamakawa K | title = Identification and mutational analysis of candidate genes for juvenile myoclonic epilepsy on 6p11-p12: LRRC1, GCLC, KIAA0057 and CLIC5 | journal = Epilepsy Research | volume = 50 | issue = 3 | pages = 265–75 | date = August 2002 | pmid = 12200217 | doi = 10.1016/S0920-1211(02)00052-9 }}
*{{cite journal | author=Shanks RA |title=AKAP350 at the Golgi apparatus. II. Association of AKAP350 with a novel chloride intracellular channel (CLIC) family member |journal=J. Biol. Chem. |volume=277 |issue= 43 |pages= 40973–80 |year= 2002 |pmid= 12163479 |doi= 10.1074/jbc.M112277200 |name-list-format=vanc| author2=Larocca MC  | author3=Berryman M  | display-authors=3  | last4=Edwards  | first4=JC  | last5=Urushidani  | first5=T  | last6=Navarre  | first6=J  | last7=Goldenring  | first7=JR }}
* {{cite journal | vauthors = Berryman M, Bruno J, Price J, Edwards JC | title = CLIC-5A functions as a chloride channel in vitro and associates with the cortical actin cytoskeleton in vitro and in vivo | journal = The Journal of Biological Chemistry | volume = 279 | issue = 33 | pages = 34794–801 | date = August 2004 | pmid = 15184393 | doi = 10.1074/jbc.M402835200 }}
*{{cite journal | author=Suzuki T |title=Identification and mutational analysis of candidate genes for juvenile myoclonic epilepsy on 6p11-p12: LRRC1, GCLC, KIAA0057 and CLIC5 |journal=Epilepsy Res. |volume=50 |issue= 3 |pages= 265–75 |year= 2002 |pmid= 12200217 |doi=10.1016/S0920-1211(02)00052-9 |name-list-format=vanc| author2=Morita R  | author3=Sugimoto Y  | display-authors=3  | last4=Sugawara  | first4=Takashi  | last5=Bai  | first5=Dong-Sheng  | last6=Alonso  | first6=Maria E.  | last7=Medina  | first7=Marco T.  | last8=Bailey  | first8=Julia N.  | last9=Rasmussen  | first9=Astrid  }}
* {{cite journal | vauthors = Otsuki T, Ota T, Nishikawa T, Hayashi K, Suzuki Y, Yamamoto J, Wakamatsu A, Kimura K, Sakamoto K, Hatano N, Kawai Y, Ishii S, Saito K, Kojima S, Sugiyama T, Ono T, Okano K, Yoshikawa Y, Aotsuka S, Sasaki N, Hattori A, Okumura K, Nagai K, Sugano S, Isogai T | title = Signal sequence and keyword trap in silico for selection of full-length human cDNAs encoding secretion or membrane proteins from oligo-capped cDNA libraries | journal = DNA Research | volume = 12 | issue = 2 | pages = 117–26 | year = 2007 | pmid = 16303743 | doi = 10.1093/dnares/12.2.117 }}
*{{cite journal  | author=Strausberg RL |title=Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences |journal=Proc. Natl. Acad. Sci. U.S.A. |volume=99 |issue= 26 |pages= 16899–903 |year= 2003 |pmid= 12477932 |doi= 10.1073/pnas.242603899  | pmc=139241  |name-list-format=vanc| author2=Feingold EA  | author3=Grouse LH  | display-authors=3  | last4=Derge  | first4=JG  | last5=Klausner  | first5=RD  | last6=Collins  | first6=FS  | last7=Wagner  | first7=L  | last8=Shenmen  | first8=CM  | last9=Schuler  | first9=GD }}
* {{cite journal | vauthors = Gonzalez A, Ciobanu D, Sayers M, Sirr N, Dalton T, Davies M | title = Gene transcript amplification from cell lysates in continuous-flow microfluidic devices | journal = Biomedical Microdevices | volume = 9 | issue = 5 | pages = 729–36 | date = October 2007 | pmid = 17492382 | doi = 10.1007/s10544-007-9083-1 }}
*{{cite journal  | author=Mungall AJ |title=The DNA sequence and analysis of human chromosome 6 |journal=Nature |volume=425 |issue= 6960 |pages= 805–11 |year= 2003 |pmid= 14574404 |doi= 10.1038/nature02055  |name-list-format=vanc| author2=Palmer SA  | author3=Sims SK  | display-authors=3  | last4=Edwards  | first4=C. A.  | last5=Ashurst  | first5=J. L.  | last6=Wilming  | first6=L.  | last7=Jones  | first7=M. C.  | last8=Horton  | first8=R.  | last9=Hunt  | first9=S. E. }}
* {{cite journal | vauthors = Singh H, Cousin MA, Ashley RH | title = Functional reconstitution of mammalian 'chloride intracellular channels' CLIC1, CLIC4 and CLIC5 reveals differential regulation by cytoskeletal actin | journal = The FEBS Journal | volume = 274 | issue = 24 | pages = 6306–16 | date = December 2007 | pmid = 18028448 | doi = 10.1111/j.1742-4658.2007.06145.x }}
*{{cite journal | author=Ota T |title=Complete sequencing and characterization of 21,243 full-length human cDNAs |journal=Nat. Genet. |volume=36 |issue= 1 |pages= 40–5 |year= 2004 |pmid= 14702039 |doi= 10.1038/ng1285  |name-list-format=vanc| author2=Suzuki Y  | author3=Nishikawa T  | display-authors=3  | last4=Otsuki  | first4=Tetsuji  | last5=Sugiyama  | first5=Tomoyasu  | last6=Irie  | first6=Ryotaro  | last7=Wakamatsu  | first7=Ai  | last8=Hayashi  | first8=Koji  | last9=Sato  | first9=Hiroyuki }}
*{{cite journal  | vauthors=Berryman M, Bruno J, Price J, Edwards JC |title=CLIC-5A functions as a chloride channel in vitro and associates with the cortical actin cytoskeleton in vitro and in vivo |journal=J. Biol. Chem. |volume=279 |issue= 33 |pages= 34794–801 |year= 2004 |pmid= 15184393 |doi= 10.1074/jbc.M402835200 }}
*{{cite journal | author=Gerhard DS |title=The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC) |journal=Genome Res. |volume=14 |issue= 10B |pages= 2121–7 |year= 2004 |pmid= 15489334 |doi= 10.1101/gr.2596504  | pmc=528928  |name-list-format=vanc| author2=Wagner L  | author3=Feingold EA  | display-authors=3  | last4=Shenmen  | first4=CM  | last5=Grouse  | first5=LH  | last6=Schuler  | first6=G  | last7=Klein  | first7=SL  | last8=Old  | first8=S | last9=Rasooly  | first9=R }}
*{{cite journal  | author=Otsuki T |title=Signal sequence and keyword trap in silico for selection of full-length human cDNAs encoding secretion or membrane proteins from oligo-capped cDNA libraries |journal=DNA Res. |volume=12 |issue= 2 |pages= 117–26 |year= 2007 |pmid= 16303743 |doi= 10.1093/dnares/12.2.117 |name-list-format=vanc| author2=Ota T  | author3=Nishikawa T  | display-authors=3  | last4=Hayashi  | first4=K  | last5=Suzuki  | first5=Y  | last6=Yamamoto  | first6=J  | last7=Wakamatsu  | first7=A  | last8=Kimura  | first8=K  | last9=Sakamoto  | first9=K }}
*{{cite journal | author=Gonzalez A |title=Gene transcript amplification from cell lysates in continuous-flow microfluidic devices |journal=Biomedical Microdevices |volume=9 |issue= 5 |pages= 729–36 |year= 2007 |pmid= 17492382 |doi= 10.1007/s10544-007-9083-1 |name-list-format=vanc| author2=Ciobanu D  | author3=Sayers M  | display-authors=3  | last4=Sirr  | first4=Noel  | last5=Dalton  | first5=Tara  | last6=Davies  | first6=Mark }}
*{{cite journal | vauthors=Singh H, Cousin MA, Ashley RH |title=Functional reconstitution of mammalian 'chloride intracellular channels' CLIC1, CLIC4 and CLIC5 reveals differential regulation by cytoskeletal actin |journal=FEBS J.|volume=274 |issue= 24 |pages= 6306–6316 |year= 2007 |pmid= 18028448 |doi=10.1111/j.1742-4658.2007.06145.x }}
}}
{{refend}}
{{refend}}


==External links==
== External links ==
* {{MeshName|CLIC5+protein,+human}}
* {{MeshName|CLIC5+protein,+human}}
* {{UCSC gene info|CLIC5}}
* {{UCSC gene info|CLIC5}}
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{{Ion channels|g4}}
{{Ion channels|g4}}


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[[Category:Ion channels]]
[[Category:Ion channels]]


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{{gene-6-stub}}

Latest revision as of 20:15, 17 April 2018

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Identifiers
Aliases
External IDsGeneCards: [1]
Orthologs
SpeciesHumanMouse
Entrez

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Ensembl

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UniProt

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RefSeq (mRNA)

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RefSeq (protein)

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Location (UCSC)n/an/a
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Wikidata
View/Edit Human

Chloride intracellular channel protein 5 is a protein that in humans is encoded by the CLIC5 gene.[1][2]

Expression and localization

CLIC5 exists in two alternative splice variants, a smaller CLIC5A and larger CLIC5B protein.

CLIC5A is expressed chiefly in the renal glomerulus, specifically in podocytes. Within the cell, CLIC5A is localized to the plasma membrane and the cytosol, and associates and is regulated by the actin cytoskeleton.[2] CLIC5A can form ion channels in vitro and its channel activity is regulated by actin, though measurement of its chloride conductance in vitro suggests that CLIC5A is equally selective for cations and anions.

Function

Although chloride intracellular channel (CLIC) proteins were thought to be involved in ion transport in subcellular compartments, their actual functions suggest their role in diverse cellular and physiological functions including apoptosis and angiogenesis in CLIC1.

CLIC5A, through its interactions with the small GTPase Rac1, induces the phosphorylation of ezrin-moeisin-radixin (ERM) proteins and localized production of the phosphoinositide phosphatidylinositol-4,5-bisphosphate.[3] These two events activate ezrin, enabling it to couple transmembrane proteins to the actin cytoskeleton, which could represent a mechanism by which podocyte foot processes form to enable renal filtration.[4]

Clinical relevance

CLIC5A deficiency in mouse models potentiates glomerular injury in hypertension. In these mice, podocyte foot processes were also more sparse and disperse than in wild-type mice.[4]

See also

References

  1. ↑ Berryman M, Bretscher A (May 2000). "Identification of a novel member of the chloride intracellular channel gene family (CLIC5) that associates with the actin cytoskeleton of placental microvilli". Molecular Biology of the Cell. 11 (5): 1509–21. doi:10.1091/mbc.11.5.1509. PMC 14863. PMID 10793131.
  2. ↑ 2.0 2.1 "Entrez Gene: CLIC5 chloride intracellular channel 5".
  3. ↑ Al-Momany A, Li L, Alexander RT, Ballermann BJ (December 2014). "Clustered PI(4,5)P₂ accumulation and ezrin phosphorylation in response to CLIC5A". Journal of Cell Science. 127 (Pt 24): 5164–78. doi:10.1242/jcs.147744. PMID 25344252.
  4. ↑ 4.0 4.1 Tavasoli M, Li L, Al-Momany A, Zhu LF, Adam BA, Wang Z, Ballermann BJ (April 2016). "The chloride intracellular channel 5A stimulates podocyte Rac1, protecting against hypertension-induced glomerular injury". Kidney International. 89 (4): 833–47. doi:10.1016/j.kint.2016.01.001. PMID 26924049.

Further reading

  • Singh H (May 2010). "Two decades with dimorphic Chloride Intracellular Channels (CLICs)". FEBS Letters. 584 (10): 2112–21. doi:10.1016/j.febslet.2010.03.013. PMID 20226783.
  • Maruyama K, Sugano S (January 1994). "Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides". Gene. 138 (1–2): 171–4. doi:10.1016/0378-1119(94)90802-8. PMID 8125298.
  • Suzuki Y, Yoshitomo-Nakagawa K, Maruyama K, Suyama A, Sugano S (October 1997). "Construction and characterization of a full length-enriched and a 5'-end-enriched cDNA library". Gene. 200 (1–2): 149–56. doi:10.1016/S0378-1119(97)00411-3. PMID 9373149.
  • Shanks RA, Larocca MC, Berryman M, Edwards JC, Urushidani T, Navarre J, Goldenring JR (October 2002). "AKAP350 at the Golgi apparatus. II. Association of AKAP350 with a novel chloride intracellular channel (CLIC) family member". The Journal of Biological Chemistry. 277 (43): 40973–80. doi:10.1074/jbc.M112277200. PMID 12163479.
  • Suzuki T, Morita R, Sugimoto Y, Sugawara T, Bai DS, Alonso ME, Medina MT, Bailey JN, Rasmussen A, Ramos-Peek J, Cordova S, Rubio-Donnadieu F, Ochoa A, Jara-Prado A, Inazawa J, Delgado-Escueta AV, Yamakawa K (August 2002). "Identification and mutational analysis of candidate genes for juvenile myoclonic epilepsy on 6p11-p12: LRRC1, GCLC, KIAA0057 and CLIC5". Epilepsy Research. 50 (3): 265–75. doi:10.1016/S0920-1211(02)00052-9. PMID 12200217.
  • Berryman M, Bruno J, Price J, Edwards JC (August 2004). "CLIC-5A functions as a chloride channel in vitro and associates with the cortical actin cytoskeleton in vitro and in vivo". The Journal of Biological Chemistry. 279 (33): 34794–801. doi:10.1074/jbc.M402835200. PMID 15184393.
  • Otsuki T, Ota T, Nishikawa T, Hayashi K, Suzuki Y, Yamamoto J, Wakamatsu A, Kimura K, Sakamoto K, Hatano N, Kawai Y, Ishii S, Saito K, Kojima S, Sugiyama T, Ono T, Okano K, Yoshikawa Y, Aotsuka S, Sasaki N, Hattori A, Okumura K, Nagai K, Sugano S, Isogai T (2007). "Signal sequence and keyword trap in silico for selection of full-length human cDNAs encoding secretion or membrane proteins from oligo-capped cDNA libraries". DNA Research. 12 (2): 117–26. doi:10.1093/dnares/12.2.117. PMID 16303743.
  • Gonzalez A, Ciobanu D, Sayers M, Sirr N, Dalton T, Davies M (October 2007). "Gene transcript amplification from cell lysates in continuous-flow microfluidic devices". Biomedical Microdevices. 9 (5): 729–36. doi:10.1007/s10544-007-9083-1. PMID 17492382.
  • Singh H, Cousin MA, Ashley RH (December 2007). "Functional reconstitution of mammalian 'chloride intracellular channels' CLIC1, CLIC4 and CLIC5 reveals differential regulation by cytoskeletal actin". The FEBS Journal. 274 (24): 6306–16. doi:10.1111/j.1742-4658.2007.06145.x. PMID 18028448.

External links

This article incorporates text from the United States National Library of Medicine, which is in the public domain.

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