SCN3A: Difference between revisions

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Revision as of 05:59, 11 September 2017

Sodium channel, voltage-gated, type III, alpha subunit (SCN3A) is a protein that in humans is encoded by the Nav1.3 gene.^[1]

Voltage-gated sodium channels are transmembrane glycoprotein complexes composed of a large alpha subunit with 24 transmembrane domains and one or more regulatory beta subunits. They are responsible for the generation and propagation of action potentials in neurons and muscle. This gene encodes one member of the sodium channel alpha subunit gene family, and is found in a cluster of five alpha subunit genes on chromosome 2. Multiple transcript variants encoding different isoforms have been found for this gene.^[1]

SCN3A is the only sodium channel transcript which is changed after nerve injury.

References

↑ ^1.0 ^1.1 "Entrez Gene: SCN3A sodium channel, voltage-gated, type III, alpha subunit".

Catterall WA, Goldin AL, Waxman SG (2006). "International Union of Pharmacology. XLVII. Nomenclature and structure-function relationships of voltage-gated sodium channels". Pharmacol. Rev. 57 (4): 397–409. doi:10.1124/pr.57.4.4. PMID 16382098.
Malo MS, Srivastava K, Andresen JM, et al. (1994). "Targeted gene walking by low stringency polymerase chain reaction: assignment of a putative human brain sodium channel gene (SCN3A) to chromosome 2q24-31". Proc. Natl. Acad. Sci. U.S.A. 91 (8): 2975–9. doi:10.1073/pnas.91.8.2975. PMC 43497. PMID 8159690.
Bonaldo MF, Lennon G, Soares MB (1997). "Normalization and subtraction: two approaches to facilitate gene discovery". Genome Res. 6 (9): 791–806. doi:10.1101/gr.6.9.791. PMID 8889548.
Lu CM, Brown GB (1998). "Isolation of a human-brain sodium-channel gene encoding two isoforms of the subtype III alpha-subunit". J. Mol. Neurosci. 10 (1): 67–70. doi:10.1007/BF02737087. PMID 9589372.
Nagase T, Kikuno R, Ishikawa KI, et al. (2000). "Prediction of the coding sequences of unidentified human genes. XVI. The complete sequences of 150 new cDNA clones from brain which code for large proteins in vitro". DNA Res. 7 (1): 65–73. doi:10.1093/dnares/7.1.65. PMID 10718198.
Gotthardt M, Trommsdorff M, Nevitt MF, et al. (2000). "Interactions of the low density lipoprotein receptor gene family with cytosolic adaptor and scaffold proteins suggest diverse biological functions in cellular communication and signal transduction". J. Biol. Chem. 275 (33): 25616–24. doi:10.1074/jbc.M000955200. PMID 10827173.
Chen YH, Dale TJ, Romanos MA, et al. (2001). "Cloning, distribution and functional analysis of the type III sodium channel from human brain". Eur. J. Neurosci. 12 (12): 4281–9. doi:10.1046/j.1460-9568.2000.01336.x. PMID 11122339.
Kasai N, Fukushima K, Ueki Y, et al. (2001). "Genomic structures of SCN2A and SCN3A – candidate genes for deafness at the DFNA16 locus". Gene. 264 (1): 113–22. doi:10.1016/S0378-1119(00)00594-1. PMID 11245985.
Whitaker WR, Faull RL, Dragunow M, et al. (2001). "Changes in the mRNAs encoding voltage-gated sodium channel types II and III in human epileptic hippocampus". Neuroscience. 106 (2): 275–85. doi:10.1016/S0306-4522(01)00212-3. PMID 11566500.
Weiss LA, Escayg A, Kearney JA, et al. (2003). "Sodium channels SCN1A, SCN2A and SCN3A in familial autism". Mol. Psychiatry. 8 (2): 186–94. doi:10.1038/sj.mp.4001241. PMID 12610651.
Shah BS, Rush AM, Liu S, et al. (2004). "Contactin associates with sodium channel Nav1.3 in native tissues and increases channel density at the cell surface". J. Neurosci. 24 (33): 7387–99. doi:10.1523/JNEUROSCI.0322-04.2004. PMID 15317864.
Thimmapaya R, Neelands T, Niforatos W, et al. (2005). "Distribution and functional characterization of human Nav1.3 splice variants". Eur. J. Neurosci. 22 (1): 1–9. doi:10.1111/j.1460-9568.2005.04155.x. PMID 16029190.
Platoshyn O, Remillard CV, Fantozzi I, et al. (2006). "Identification of Functional Voltage-gated Na+ Channels in Cultured Human Pulmonary Artery Smooth Muscle Cells". Pflugers Arch. 451 (2): 380–7. doi:10.1007/s00424-005-1478-3. PMC 1351366. PMID 16052353.
Kimura K, Wakamatsu A, Suzuki Y, et al. (2006). "Diversification of transcriptional modulation: Large-scale identification and characterization of putative alternative promoters of human genes". Genome Res. 16 (1): 55–65. doi:10.1101/gr.4039406. PMC 1356129. PMID 16344560.
Martin MS, Tang B, Ta N, Escayg A (2007). "Characterization of 5′ untranslated regions of the voltage-gated sodium channels SCN1A, SCN2A, and SCN3A and identification of cis-conserved noncoding sequences". Genomics. 90 (2): 225–35. doi:10.1016/j.ygeno.2007.04.006. PMC 2637551. PMID 17544618.

External links

SCN3A+protein,+human at the US National Library of Medicine Medical Subject Headings (MeSH)

This article incorporates text from the United States National Library of Medicine, which is in the public domain.

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[entrez-1] 1.0 ^1.1 "Entrez Gene: SCN3A sodium channel, voltage-gated, type III, alpha subunit".

[1]

@@ Line 1: / Line 1: @@
-<!-- The PBB_Controls template provides controls for Protein Box Bot, please see Template:PBB_Controls for details. -->
+{{Infobox_gene}}
-{{PBB_Controls
+'''Sodium channel, voltage-gated, type III, alpha subunit''' ('''SCN3A''') is a  [[protein]] that in humans is encoded by the '''Nav1.3''' [[gene]].<ref name="entrez">{{cite web | title = Entrez Gene: SCN3A sodium channel, voltage-gated, type III, alpha subunit| url = https://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=6328| accessdate = }}</ref>
-| update_page = yes
-| require_manual_inspection = no
-| update_protein_box = yes
-| update_summary = yes
-| update_citations = yes
-}}
-<!-- The GNF_Protein_box is automatically maintained by Protein Box Bot.  See Template:PBB_Controls to Stop updates. -->
-{{GNF_Protein_box
- | image = PBB_Protein_SCN3A_image.jpg
- | image_source = [[Protein_Data_Bank|PDB]] rendering based on 1byy.
- | PDB = {{PDB2|1byy}}
- | Name = Sodium channel, voltage-gated, type III, alpha subunit
- | HGNCid = 10590
- | Symbol = SCN3A
- | AltSymbols =; KIAA1356; NAC3; Nav1.3
- | OMIM = 182391
- | ECnumber =
- | Homologene = 56005
- | MGIid = 98249
- | GeneAtlas_image1 = PBB_GE_SCN3A_210432_s_at_tn.png
- | Function = {{GNF_GO|id=GO:0005248 |text = voltage-gated sodium channel activity}} {{GNF_GO|id=GO:0031402 |text = sodium ion binding}}
- | Component = {{GNF_GO|id=GO:0001518 |text = voltage-gated sodium channel complex}} {{GNF_GO|id=GO:0016020 |text = membrane}} {{GNF_GO|id=GO:0016021 |text = integral to membrane}}
- | Process = {{GNF_GO|id=GO:0006811 |text = ion transport}} {{GNF_GO|id=GO:0006814 |text = sodium ion transport}}
- | Orthologs = {{GNF_Ortholog_box
-    | Hs_EntrezGene = 6328
-    | Hs_Ensembl = ENSG00000153253
-    | Hs_RefseqProtein = NP_001075145
-    | Hs_RefseqmRNA = NM_001081676
-    | Hs_GenLoc_db =
-    | Hs_GenLoc_chr = 2
-    | Hs_GenLoc_start = 165652286
-    | Hs_GenLoc_end = 165768799
-    | Hs_Uniprot = Q9NY46
-    | Mm_EntrezGene = 20269
-    | Mm_Ensembl = ENSMUSG00000057182
-    | Mm_RefseqmRNA = XM_001001516
-    | Mm_RefseqProtein = XP_001001516
-    | Mm_GenLoc_db =
-    | Mm_GenLoc_chr = 2
-    | Mm_GenLoc_start = 65295680
-    | Mm_GenLoc_end = 65337515
-    | Mm_Uniprot =
-  }}
-}}
-'''Sodium channel, voltage-gated, type III, alpha subunit''' ('''SCN3A'''), also known as '''Nav1.3''', is a human [[gene]].<ref name="entrez">{{cite web | title = Entrez Gene: SCN3A sodium channel, voltage-gated, type III, alpha subunit| url = http://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=6328| accessdate = }}</ref>
 <!-- The PBB_Summary template is automatically maintained by Protein Box Bot.  See Template:PBB_Controls to Stop updates. -->
 {{PBB_Summary
 | section_title =
-| summary_text = Voltage-gated sodium channels are transmembrane glycoprotein complexes composed of a large alpha subunit with 24 transmembrane domains and one or more regulatory beta subunits. They are responsible for the generation and propagation of action potentials in neurons and muscle. This gene encodes one member of the sodium channel alpha subunit gene family, and is found in a cluster of five alpha subunit genes on chromosome 2. Multiple transcript variants encoding different isoforms have been found for this gene.<ref name="entrez">{{cite web | title = Entrez Gene: SCN3A sodium channel, voltage-gated, type III, alpha subunit| url = http://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=6328| accessdate = }}</ref>
+| summary_text = Voltage-gated sodium channels are transmembrane glycoprotein complexes composed of a large alpha subunit with 24 transmembrane domains and one or more regulatory beta subunits. They are responsible for the generation and propagation of action potentials in neurons and muscle. This gene encodes one member of the sodium channel alpha subunit gene family, and is found in a cluster of five alpha subunit genes on chromosome 2. Multiple transcript variants encoding different isoforms have been found for this gene.<ref name="entrez" />
+SCN3A is the only sodium channel transcript which is changed after nerve injury.
 }}
@@ Line 58: / Line 14: @@
 ==References==
-{{reflist|2}}
+{{reflist}}
 ==Further reading==
-{{refbegin | 2}}
+{{refbegin|35em}}
 {{PBB_Further_reading
 | citations =
-*{{cite journal  | author=Catterall WA, Goldin AL, Waxman SG |title=International Union of Pharmacology. XLVII. Nomenclature and structure-function relationships of voltage-gated sodium channels. |journal=Pharmacol. Rev. |volume=57 |issue= 4 |pages= 397-409 |year= 2006 |pmid= 16382098 |doi= 10.1124/pr.57.4.4 }}
+*{{cite journal  | vauthors=Catterall WA, Goldin AL, Waxman SG |title=International Union of Pharmacology. XLVII. Nomenclature and structure-function relationships of voltage-gated sodium channels |journal=Pharmacol. Rev. |volume=57 |issue= 4 |pages= 397–409 |year= 2006 |pmid= 16382098 |doi= 10.1124/pr.57.4.4 }}
-*{{cite journal  | author=Malo MS, Srivastava K, Andresen JM, ''et al.'' |title=Targeted gene walking by low stringency polymerase chain reaction: assignment of a putative human brain sodium channel gene (SCN3A) to chromosome 2q24-31. |journal=Proc. Natl. Acad. Sci. U.S.A. |volume=91 |issue= 8 |pages= 2975-9 |year= 1994 |pmid= 8159690 |doi=  }}
+*{{cite journal   |vauthors=Malo MS, Srivastava K, Andresen JM, etal |title=Targeted gene walking by low stringency polymerase chain reaction: assignment of a putative human brain sodium channel gene (SCN3A) to chromosome 2q24-31 |journal=Proc. Natl. Acad. Sci. U.S.A. |volume=91 |issue= 8 |pages= 2975–9 |year= 1994 |pmid= 8159690 |doi=10.1073/pnas.91.8.2975  | pmc=43497  }}
-*{{cite journal  | author=Bonaldo MF, Lennon G, Soares MB |title=Normalization and subtraction: two approaches to facilitate gene discovery. |journal=Genome Res. |volume=6 |issue= 9 |pages= 791-806 |year= 1997 |pmid= 8889548 |doi=  }}
+*{{cite journal  | vauthors=Bonaldo MF, Lennon G, Soares MB |title=Normalization and subtraction: two approaches to facilitate gene discovery |journal=Genome Res. |volume=6 |issue= 9 |pages= 791–806 |year= 1997 |pmid= 8889548 |doi=10.1101/gr.6.9.791  }}
-*{{cite journal  | author=Lu CM, Brown GB |title=Isolation of a human-brain sodium-channel gene encoding two isoforms of the subtype III alpha-subunit. |journal=J. Mol. Neurosci. |volume=10 |issue= 1 |pages= 67-70 |year= 1998 |pmid= 9589372 |doi=  }}
+*{{cite journal  | vauthors=Lu CM, Brown GB |title=Isolation of a human-brain sodium-channel gene encoding two isoforms of the subtype III alpha-subunit |journal=J. Mol. Neurosci. |volume=10 |issue= 1 |pages= 67–70 |year= 1998 |pmid= 9589372 |doi=10.1007/BF02737087  }}
-*{{cite journal  | author=Nagase T, Kikuno R, Ishikawa KI, ''et al.'' |title=Prediction of the coding sequences of unidentified human genes. XVI. The complete sequences of 150 new cDNA clones from brain which code for large proteins in vitro. |journal=DNA Res. |volume=7 |issue= 1 |pages= 65-73 |year= 2000 |pmid= 10718198 |doi=  }}
+*{{cite journal   |vauthors=Nagase T, Kikuno R, Ishikawa KI, etal |title=Prediction of the coding sequences of unidentified human genes. XVI. The complete sequences of 150 new cDNA clones from brain which code for large proteins in vitro |journal=DNA Res. |volume=7 |issue= 1 |pages= 65–73 |year= 2000 |pmid= 10718198 |doi=10.1093/dnares/7.1.65  }}
-*{{cite journal  | author=Gotthardt M, Trommsdorff M, Nevitt MF, ''et al.'' |title=Interactions of the low density lipoprotein receptor gene family with cytosolic adaptor and scaffold proteins suggest diverse biological functions in cellular communication and signal transduction. |journal=J. Biol. Chem. |volume=275 |issue= 33 |pages= 25616-24 |year= 2000 |pmid= 10827173 |doi= 10.1074/jbc.M000955200 }}
+*{{cite journal   |vauthors=Gotthardt M, Trommsdorff M, Nevitt MF, etal |title=Interactions of the low density lipoprotein receptor gene family with cytosolic adaptor and scaffold proteins suggest diverse biological functions in cellular communication and signal transduction |journal=J. Biol. Chem. |volume=275 |issue= 33 |pages= 25616–24 |year= 2000 |pmid= 10827173 |doi= 10.1074/jbc.M000955200 }}
-*{{cite journal  | author=Chen YH, Dale TJ, Romanos MA, ''et al.'' |title=Cloning, distribution and functional analysis of the type III sodium channel from human brain. |journal=Eur. J. Neurosci. |volume=12 |issue= 12 |pages= 4281-9 |year= 2001 |pmid= 11122339 |doi=  }}
+*{{cite journal   |vauthors=Chen YH, Dale TJ, Romanos MA, etal |title=Cloning, distribution and functional analysis of the type III sodium channel from human brain |journal=Eur. J. Neurosci. |volume=12 |issue= 12 |pages= 4281–9 |year= 2001 |pmid= 11122339 |doi=10.1046/j.1460-9568.2000.01336.x  }}
-*{{cite journal  | author=Kasai N, Fukushima K, Ueki Y, ''et al.'' |title=Genomic structures of SCN2A and SCN3A - candidate genes for deafness at the DFNA16 locus. |journal=Gene |volume=264 |issue= 1 |pages= 113-22 |year= 2001 |pmid= 11245985 |doi=  }}
+*{{cite journal   |vauthors=Kasai N, Fukushima K, Ueki Y, etal |title=Genomic structures of SCN2A and SCN3A – candidate genes for deafness at the DFNA16 locus |journal=Gene |volume=264 |issue= 1 |pages= 113–22 |year= 2001 |pmid= 11245985 |doi=10.1016/S0378-1119(00)00594-1  }}
-*{{cite journal  | author=Whitaker WR, Faull RL, Dragunow M, ''et al.'' |title=Changes in the mRNAs encoding voltage-gated sodium channel types II and III in human epileptic hippocampus. |journal=Neuroscience |volume=106 |issue= 2 |pages= 275-85 |year= 2001 |pmid= 11566500 |doi=  }}
+*{{cite journal   |vauthors=Whitaker WR, Faull RL, Dragunow M, etal |title=Changes in the mRNAs encoding voltage-gated sodium channel types II and III in human epileptic hippocampus |journal=Neuroscience |volume=106 |issue= 2 |pages= 275–85 |year= 2001 |pmid= 11566500 |doi=10.1016/S0306-4522(01)00212-3  }}
-*{{cite journal  | author=Weiss LA, Escayg A, Kearney JA, ''et al.'' |title=Sodium channels SCN1A, SCN2A and SCN3A in familial autism. |journal=Mol. Psychiatry |volume=8 |issue= 2 |pages= 186-94 |year= 2003 |pmid= 12610651 |doi= 10.1038/sj.mp.4001241 }}
+*{{cite journal   |vauthors=Weiss LA, Escayg A, Kearney JA, etal |title=Sodium channels SCN1A, SCN2A and SCN3A in familial autism |journal=Mol. Psychiatry |volume=8 |issue= 2 |pages= 186–94 |year= 2003 |pmid= 12610651 |doi= 10.1038/sj.mp.4001241 }}
-*{{cite journal  | author=Shah BS, Rush AM, Liu S, ''et al.'' |title=Contactin associates with sodium channel Nav1.3 in native tissues and increases channel density at the cell surface. |journal=J. Neurosci. |volume=24 |issue= 33 |pages= 7387-99 |year= 2004 |pmid= 15317864 |doi= 10.1523/JNEUROSCI.0322-04.2004 }}
+*{{cite journal   |vauthors=Shah BS, Rush AM, Liu S, etal |title=Contactin associates with sodium channel Nav1.3 in native tissues and increases channel density at the cell surface |journal=J. Neurosci. |volume=24 |issue= 33 |pages= 7387–99 |year= 2004 |pmid= 15317864 |doi= 10.1523/JNEUROSCI.0322-04.2004 }}
-*{{cite journal  | author=Thimmapaya R, Neelands T, Niforatos W, ''et al.'' |title=Distribution and functional characterization of human Nav1.3 splice variants. |journal=Eur. J. Neurosci. |volume=22 |issue= 1 |pages= 1-9 |year= 2005 |pmid= 16029190 |doi= 10.1111/j.1460-9568.2005.04155.x }}
+*{{cite journal   |vauthors=Thimmapaya R, Neelands T, Niforatos W, etal |title=Distribution and functional characterization of human Nav1.3 splice variants |journal=Eur. J. Neurosci. |volume=22 |issue= 1 |pages= 1–9 |year= 2005 |pmid= 16029190 |doi= 10.1111/j.1460-9568.2005.04155.x }}
-*{{cite journal  | author=Platoshyn O, Remillard CV, Fantozzi I, ''et al.'' |title=Identification of functional voltage-gated Na(+) channels in cultured human pulmonary artery smooth muscle cells. |journal=Pflugers Arch. |volume=451 |issue= 2 |pages= 380-7 |year= 2006 |pmid= 16052353 |doi= 10.1007/s00424-005-1478-3 }}
+*{{cite journal   |vauthors=Platoshyn O, Remillard CV, Fantozzi I, etal |title=Identification of Functional Voltage-gated Na+ Channels in Cultured Human Pulmonary Artery Smooth Muscle Cells |journal=Pflugers Arch. |volume=451 |issue= 2 |pages= 380–7 |year= 2006 |pmid= 16052353 |doi= 10.1007/s00424-005-1478-3  | pmc=1351366 }}
-*{{cite journal  | author=Kimura K, Wakamatsu A, Suzuki Y, ''et al.'' |title=Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. |journal=Genome Res. |volume=16 |issue= 1 |pages= 55-65 |year= 2006 |pmid= 16344560 |doi= 10.1101/gr.4039406 }}
+*{{cite journal   |vauthors=Kimura K, Wakamatsu A, Suzuki Y, etal |title=Diversification of transcriptional modulation: Large-scale identification and characterization of putative alternative promoters of human genes |journal=Genome Res. |volume=16 |issue= 1 |pages= 55–65 |year= 2006 |pmid= 16344560 |doi= 10.1101/gr.4039406  | pmc=1356129 }}
-*{{cite journal  | author=Martin MS, Tang B, Ta N, Escayg A |title=Characterization of 5' untranslated regions of the voltage-gated sodium channels SCN1A, SCN2A, and SCN3A and identification of cis-conserved noncoding sequences. |journal=Genomics |volume=90 |issue= 2 |pages= 225-35 |year= 2007 |pmid= 17544618 |doi= 10.1016/j.ygeno.2007.04.006 }}
+*{{cite journal  | vauthors=Martin MS, Tang B, Ta N, Escayg A |title=Characterization of 5′ untranslated regions of the voltage-gated sodium channels SCN1A, SCN2A, and SCN3A and identification of cis-conserved noncoding sequences |journal=Genomics |volume=90 |issue= 2 |pages= 225–35 |year= 2007 |pmid= 17544618 |doi= 10.1016/j.ygeno.2007.04.006  | pmc=2637551 }}
 }}
 {{refend}}
@@ Line 84: / Line 40: @@
 == External links ==
 * {{MeshName|SCN3A+protein,+human}}
+{{PDB Gallery|geneid=6328}}
+{{Ion channels|g2}}
+{{NLM content}}
+<!-- The PBB_Controls template provides controls for Protein Box Bot, please see Template:PBB_Controls for details. -->
+{{PBB_Controls
+| update_page = yes
+| require_manual_inspection = no
+| update_protein_box = yes
+| update_summary = yes
+| update_citations = yes
+}}
+[[Category:Sodium channels]]
 {{membrane-protein-stub}}
-{{NLM content}}
-{{Ion channels}}
-[[Category:Ion channels]]
-{{WikiDoc Sources}}

SCN3A: Difference between revisions

Revision as of 05:59, 11 September 2017

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