Rpn4p gene transcriptions

Associate Editor(s)-in-Chief: Henry A. Hoff

Human genes

Interactions

Consensus sequences

The upstream activating sequence (UAS) for the Rpn4p is 5'-GGTGGCAAA-3'.^[1]

RPN samplings

Copying GGTGGCAAA in "⌘F" yields none between ZSCAN22 and A1BG and none between ZNF497 and A1BG as can be found by the computer programs.

For the Basic programs testing consensus sequence GGTGGCAAA (starting with SuccessablesAAA.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:

negative strand, negative direction, looking for GGTGGCAAA, 0.
positive strand, negative direction, looking for GGTGGCAAA, 0.
positive strand, positive direction, looking for GGTGGCAAA, 0.
negative strand, positive direction, looking for GGTGGCAAA, 0.
complement, negative strand, negative direction, looking for CCACCGTTT, 0.
complement, positive strand, negative direction, looking for CCACCGTTT, 0.
complement, positive strand, positive direction, looking for CCACCGTTT, 0.
complement, negative strand, positive direction, looking for CCACCGTTT, 0.
inverse complement, negative strand, negative direction, looking for TTTGCCACC, 0.
inverse complement, positive strand, negative direction, looking for TTTGCCACC, 0.
inverse complement, positive strand, positive direction, looking for TTTGCCACC, 0.
inverse complement, negative strand, positive direction, looking for TTTGCCACC, 0.
inverse negative strand, negative direction, looking for AAACGGTGG, 0.
inverse positive strand, negative direction, looking for AAACGGTGG, 0.
inverse positive strand, positive direction, looking for AAACGGTGG, 0.
inverse negative strand, positive direction, looking for AAACGGTGG, 0.

References

↑ Hongting Tang, Yanling Wu, Jiliang Deng, Nanzhu Chen, Zhaohui Zheng, Yongjun Wei, Xiaozhou Luo, and Jay D. Keasling (6 August 2020). "Promoter Architecture and Promoter Engineering in Saccharomyces cerevisiae". Metabolites. 10 (8): 320–39. doi:10.3390/metabo10080320. PMID 32781665 Check |pmid= value (help). Retrieved 18 September 2020.

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