Vhr1p gene transcriptions

Associate Editor(s)-in-Chief: Henry A. Hoff

"Transcription of the Saccharomyces cerevisiae vitamin H transporter gene VHT1 is enhanced by low extracellular biotin."^[1]

"Vhr1p [is] a transcriptional regulator of VHT1 (VHR1 (YIL056w)".^[1]

"Deletion and linker scanning analyses of the VHT1 promoter revealed the palindromic 18-nucleotide sequence AATCA-N₈-TGAYT as the vitamin H-responsive element."^[1]

Human genes

Gene expressions

Vhr1p upstream activator sequence (UAS) occurs in the promoters of VHT1, BIO5 Saccharomyces cerevisiae genes.^[2] Its inducer is biotin where it responds to low biotin concentrations.^[2]

Interactions

Consensus sequences

AATCA-N₈-TGA(C/T)T is the UAS sequence for the transcription factor Vhr1p.^[2]

Binding site for

Hypotheses

A1BG has no regulatory elements in either promoter.
A1BG is not transcribed by a regulatory element.
No regulatory element participates in the transcription of A1BG.

VHR samplings

Copying a responsive elements consensus sequence AATCA-N₈-TGA(C/T)T and putting the sequence in "⌘F" finds none between ZNF497 and A1BG or none between ZSCAN22 and A1BG as can be found by the computer programs.

For the Basic programs testing consensus sequence AATCA-N₈-TGA(C/T)T (starting with SuccessablesVHR.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:

negative strand, negative direction, looking for AATCANNNNNNNNTGA(C/T)T, 0.
positive strand, negative direction, looking for AATCANNNNNNNNTGA(C/T)T, 0.
positive strand, positive direction, looking for AATCANNNNNNNNTGA(C/T)T, 0.
negative strand, positive direction, looking for AATCANNNNNNNNTGA(C/T)T, 0.
complement, negative strand, negative direction, looking for TTAGTNNNNNNNNACT(A/G)A, 0.
complement, positive strand, negative direction, looking for TTAGTNNNNNNNNACT(A/G)A, 0.
complement, positive strand, positive direction, looking for TTAGTNNNNNNNNACT(A/G)A, 0.
complement, negative strand, positive direction, looking for TTAGTNNNNNNNNACT(A/G)A, 0.
inverse complement, negative strand, negative direction, looking for A(A/G)TCANNNNNNNNTGATT, 0.
inverse complement, positive strand, negative direction, looking for A(A/G)TCANNNNNNNNTGATT, 0.
inverse complement, positive strand, positive direction, looking for A(A/G)TCANNNNNNNNTGATT, 0.
inverse complement, negative strand, positive direction, looking for A(A/G)TCANNNNNNNNTGATT, 0.
inverse negative strand, negative direction, looking for T(C/T)AGTNNNNNNNNACTAA, 0.
inverse positive strand, negative direction, looking for T(C/T)AGTNNNNNNNNACTAA, 0.
inverse positive strand, positive direction, looking for T(C/T)AGTNNNNNNNNACTAA, 0.
inverse negative strand, positive direction, looking for T(C/T)AGTNNNNNNNNACTAA, 0.

Acknowledgements

The content on this page was first contributed by: Henry A. Hoff.

References

↑ ^1.0 ^1.1 ^1.2 Matthias Weider, Agnes Machnik, Franz Klebl and Norbert Sauer (12 May 2006). "Vhr1p, a New Transcription Factor from Budding Yeast, Regulates Biotin-dependent Expression of VHT1 and BIO5". Journal of Biological Chemistry. 281 (19): P13513–P13524. doi:10.1074/jbc.M512158200. Retrieved 8 March 2021.
↑ ^2.0 ^2.1 ^2.2 Hongting Tang, Yanling Wu, Jiliang Deng, Nanzhu Chen, Zhaohui Zheng, Yongjun Wei, Xiaozhou Luo, and Jay D. Keasling (6 August 2020). "Promoter Architecture and Promoter Engineering in Saccharomyces cerevisiae". Metabolites. 10 (8): 320–39. doi:10.3390/metabo10080320. PMID 32781665 Check |pmid= value (help). Retrieved 18 September 2020.

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transcriptions Shoot specific element gene transcriptions Sip4p gene transcriptions Smp1p gene transcriptions Sp1 gene transcriptions Spaceflight gene expressions Specificity protein gene transcriptions STAT gene transcriptions Ste12p gene transcriptions Sterol response element gene transcriptions Sucrose box gene transcriptions Synaptic Activity-Responsive Elements TACTAAC box gene transcriptions TAGteam gene transcriptions Tapetum box gene transcriptions TATA binding protein associated factor gene transcriptions TATA binding protein gene transcriptions TATA box actin/cytoskeleton/contractile family TATA box albumin family TATA box aldolase family TATA box alkaline phosphatase family TATA box annexin family TATA box cytochrome superfamily TATA box gene transcriptions TATA box heat shock family TATA box histone family TATA box human genes TATA box keratin family TATA box lipase family TATA box peptidase family TATA box platelet-derived growth factor family TATA box selenium-binding family TATA box serine protease family TATA box serpin superfamily TATA box transforming growth factor superfamily TATA box trefoil family TATA box tumor necrosis factor superfamily TATA box zinc metalloenzyme family TAT box gene transcriptions TATC box gene transcriptions Tbf1 regulatory factor gene transcriptions T box gene transcriptions TCCACCATA element gene transcriptions TC element gene transcriptions TCT gene transcriptions TEA consensus sequence gene transcriptions Tec1p gene transcriptions Telomeric repeat DNA-binding factor gene transcriptions Tetradecanoylphorbol-13-acetate response element gene transcriptions TGF-β control elements (TCEs) TGF-β inhibitory elements (TIEs) Thyroid hormone response element gene transcriptions Transcriptional regulation Transcription bubble gene transcriptions Transcription factor gene transcriptions Transcription factor 3 gene transcriptions Transcription factory gene transcriptions Transcription start site gene transcriptions Translational 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