Tetradecanoylphorbol-13-acetate response element gene transcriptions: Difference between revisions

Associate Editor(s)-in-Chief: Henry A. Hoff

Activator protein 1 (AP-1) was first discovered as a 12-O-Tetradecanoylphorbol-13-acetate (TPA)-activated transcription factor that bound to a cis-regulatory element of the human metallothionein IIa (hMTIIa) promoter and SV40.^[1]

Consensus sequences

The AP-1 binding site was identified as the TPA response element (TRE) with the consensus sequence 5’-TGA G/C TCA-3’.^[2]

12-O-tetradecanoylphorbol-13-acetate (TPA) responsive element (TRE) (TGAGTCA).^[3]

Samplings

Copying the consensus sequence for the DNA-binding factor (TRE): 3'-TGAGTCA-5' or 3'-TGACTCA-5' and putting the sequence in "⌘F" does not find either sequence in either A1BG promoter using nucleotide positions as can be found by the computer programs.

For the Basic programs testing consensus sequence 3'-TGA(G/C)TCA-5' (starting with SuccessablesTRE.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:

negative strand in the negative direction (from ZSCAN22 to A1BG) is SuccessablesTRE--.bas, looking for 3'-TGA(G/C)TCA-5', 0.
negative strand in the positive direction (from ZNF497 to A1BG) is SuccessablesTRE-+.bas, looking for 3'-TGA(G/C)TCA-5', 0.
positive strand in the negative direction (from ZSCAN22 to A1BG) is SuccessablesTRE+-.bas, looking for 3'-TGA(G/C)TCA-5', 0.
positive strand in the positive direction (from ZNF497 to A1BG) is SuccessablesTRE++.bas, looking for 3'-TGA(G/C)TCA-5', 0.
complement, negative strand, negative direction is SuccessablesTREc--.bas, looking for 3'-ACT(C/G)AGT-5', 0.
complement, negative strand, positive direction is SuccessablesTREc-+.bas, looking for 3'-ACT(C/G)AGT-5', 0.
complement, positive strand, negative direction is SuccessablesTREc+-.bas, looking for 3'-ACT(C/G)AGT-5', 0.
complement, positive strand, positive direction is SuccessablesTREc++.bas, looking for 3'-ACT(C/G)AGT-5', 0.
inverse complement, 3'-TGA(C/G)TCA-5' is the same as 3'-TGA(G/C)TCA-5'.
inverse, 3'-ACT(C/G)AGT-5' is the same as 3'-ACT(C/G)AGT-5', the complement.

Acknowledgements

The content on this page was first contributed by: Henry A. Hoff.

References

↑ Lee W, Haslinger A, Karin M, Tjian R (January 1987). "Activation of transcription by two factors that bind promoter and enhancer sequences of the human metallothionein gene and SV40". Nature. 325 (6102): 368–72. Bibcode:1987Natur.325..368L. doi:10.1038/325368a0. PMID 3027570.
↑ Angel P, Imagawa M, Chiu R, Stein B, Imbra RJ, Rahmsdorf HJ, Jonat C, Herrlich P, Karin M (June 1987). "Phorbol ester-inducible genes contain a common cis element recognized by a TPA-modulated trans-acting factor". Cell. 49 (6): 729–39. doi:10.1016/0092-8674(87)90611-8. PMID 3034432.
↑ Hiroshi Sato, Megumi Kita, and Motoharu Seiki (5 November 1993). "v-Src Activates the Expression of 92-kDa Type IV Collagenase Gene through the AP-1 Site and the GT Box Homologous to Retinoblastoma Control Elements" (PDF). The Journal of Biological Chemistry. 268 (31): 23460–8. Retrieved 13 August 2020.

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@@ Line 1: / Line 1: @@
-Activator protein 1 (AP-1) was first discovered as a 12-O-Tetradecanoylphorbol-13-acetate (TPA)-activated transcription factor that bound to a cis-regulatory element of the human metallothionein IIa (hMTIIa) promoter and SV40.<ref name="Lee, Haslinger, Karin, Tjian">{{ cite journal | vauthors = Lee W, Haslinger A, Karin M, Tjian R | title = Activation of transcription by two factors that bind promoter and enhancer sequences of the human metallothionein gene and SV40 | journal = Nature | volume = 325 | issue = 6102 | pages = 368–72 | date = January 1987 | pmid = 3027570 | doi = 10.1038/325368a0 | bibcode = 1987Natur.325..368L }}</ref> The AP-1 binding site was identified as the TPA response element (TRE) with the consensus sequence 5’-TGA G/C TCA-3’.<ref name="Angel, Imagawa, Chiu, Stein, Imbra, and coworkers">{{cite journal | vauthors = Angel P, Imagawa M, Chiu R, Stein B, Imbra RJ, Rahmsdorf HJ, Jonat C, Herrlich P, Karin M | title = Phorbol ester-inducible genes contain a common cis element recognized by a TPA-modulated trans-acting factor | journal = Cell | volume = 49 | issue = 6 | pages = 729–39 | date = June 1987 | pmid = 3034432 | doi = 10.1016/0092-8674(87)90611-8 }}</ref>
+{{AE}} Henry A. Hoff
+Activator protein 1 (AP-1) was first discovered as a 12-O-Tetradecanoylphorbol-13-acetate (TPA)-activated transcription factor that bound to a ''cis''-regulatory element of the human metallothionein IIa (hMTIIa) promoter and SV40.<ref name="Lee, Haslinger, Karin, Tjian">{{ cite journal | vauthors = Lee W, Haslinger A, Karin M, Tjian R | title = Activation of transcription by two factors that bind promoter and enhancer sequences of the human metallothionein gene and SV40 | journal = Nature | volume = 325 | issue = 6102 | pages = 368–72 | date = January 1987 | pmid = 3027570 | doi = 10.1038/325368a0 | bibcode = 1987Natur.325..368L }}</ref>
 ==Consensus sequences==
+The AP-1 binding site was identified as the TPA response element (TRE) with the consensus sequence 5’-TGA G/C TCA-3’.<ref name="Angel">{{ cite journal
+| vauthors = Angel P, Imagawa M, Chiu R, Stein B, Imbra RJ, Rahmsdorf HJ, Jonat C, Herrlich P, Karin M
+| title = Phorbol ester-inducible genes contain a common cis element recognized by a TPA-modulated trans-acting factor
+| journal = Cell
+| volume = 49
+| issue = 6
+| pages = 729–39
+| date = June 1987
+| pmid = 3034432
+| doi = 10.1016/0092-8674(87)90611-8 }}</ref>
 -''O''-tetradecanoylphorbol-13-acetate (TPA) responsive element (TRE) (TGAGTCA).<ref name=Sato>{{ cite journal
@@ Line 27: / Line 40: @@
 # positive strand in the negative direction (from ZSCAN22 to A1BG) is SuccessablesTRE+-.bas, looking for 3'-TGA(G/C)TCA-5', 0.
 # positive strand in the positive direction (from ZNF497 to A1BG) is SuccessablesTRE++.bas, looking for 3'-TGA(G/C)TCA-5', 0.
-# complement, negative strand, negative direction is SuccessablesAboxc--.bas, looking for 3'-ACTGAGA-5', 0.
+# complement, negative strand, negative direction is SuccessablesTREc--.bas, looking for 3'-ACT(C/G)AGT-5', 0.
-# complement, negative strand in the positive direction (from ZNF497 to A1BG) is SuccessablesAboxc-+.bas, looking for 3'-ACTGAGA-5', 0.
+# complement, negative strand, positive direction is SuccessablesTREc-+.bas, looking for 3'-ACT(C/G)AGT-5', 0.
-# complement, positive strand in the negative direction (from ZSCAN22 to A1BG) is SuccessablesAboxc+-.bas, looking for 3'-ACTGAGA-5', 0.
+# complement, positive strand, negative direction is SuccessablesTREc+-.bas, looking for 3'-ACT(C/G)AGT-5', 0.
-# complement, positive strand in the positive direction (from ZNF497 to A1BG) is SuccessablesAboxc++.bas, looking for 3'-ACTGAGA-5', 0.
+# complement, positive strand, positive direction is SuccessablesTREc++.bas, looking for 3'-ACT(C/G)AGT-5', 0.
-# inverse complement, negative strand, negative direction is SuccessablesAboxci--.bas, looking for 3'-AGAGTCA-5', 0.
+# inverse complement, 3'-TGA(C/G)TCA-5' is the same as 3'-TGA(G/C)TCA-5'.
-# inverse complement, negative strand in the positive direction (from ZNF497 to A1BG) is SuccessablesAboxci-+.bas, looking for 3'-AGAGTCA-5', 0.
+# inverse, 3'-ACT(C/G)AGT-5' is the same as 3'-ACT(C/G)AGT-5', the complement.
-# inverse complement, positive strand in the negative direction (from ZSCAN22 to A1BG) is SuccessablesAboxci+-.bas, looking for 3'-AGAGTCA-5', 0.
-# inverse complement, positive strand in the positive direction (from ZNF497 to A1BG) is SuccessablesAboxci++.bas, looking for 3'-AGAGTCA-5', 0.
-# inverse negative strand in the negative direction (from ZSCAN22 to A1BG) is SuccessablesAboxi--.bas, looking for 3'-TCTCAGT-5', 0.
-# inverse negative strand in the positive direction (from ZNF497 to A1BG) is SuccessablesAboxi-+.bas, looking for 3'-TCTCAGT-5', 0.
-# inverse positive strand in the negative direction (from ZSCAN22 to A1BG) is SuccessablesAboxi+-.bas, looking for 3'-TCTCAGT-5', 0.
-# inverse positive strand in the positive direction (from ZNF497 to A1BG) is SuccessablesAboxi++.bas, looking for 3'-TCTCAGT-5', 0.
 ==Acknowledgements==

Tetradecanoylphorbol-13-acetate response element gene transcriptions: Difference between revisions

Latest revision as of 15:07, 24 August 2020

Contents

Consensus sequences

Samplings

Acknowledgements

See also

References

External links

Navigation menu

Tetradecanoylphorbol-13-acetate response element gene transcriptions: Difference between revisions

Latest revision as of 15:07, 24 August 2020

Consensus sequences

Samplings

Acknowledgements

See also

References

External links

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