Maf recognition element gene transcriptions: Difference between revisions

Associate Editor(s)-in-Chief: Henry A. Hoff

Large "and small [musculoaponeurotic fibrosarcoma] Maf proteins are able to form homodimers that recognize the Maf recognition element (MARE)."^[1]

bZIP Maf is a domain found in Maf transcription factor proteins that contains a leucine zipper (bZIP) domain, which mediates the transcription factor's dimerization and DNA binding properties with DNA motifs termed the Maf recognition elements (MAREs) that are 13 or 14 base pairs long such that the two residues at the beginning of helix H2 are positioned to recognize the flanking region of the DNA.^[2]

Human genes

Interactions

Consensus sequences

"Maf factors recognize relatively long palindromic DNA sequences, TGCTGA(G/C)TCAGCA and TGCTGA(GC/CG)TCAGCA, which are now known as Maf recognition elements (MAREs)."^[3]

Samplings

Copying an apparent consensus sequence for the MARE of TGCTGA or TCAGCA and putting it in "⌘F" finds none located between ZSCAN22 and A1BG but using TCAGCA alone finds five between ZNF497 and A1BG as can be found by the computer programs.

For the Basic programs testing consensus sequence TGCTGA(C/G)TCAGCA (starting with SuccessablesMARE.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:

negative strand, negative direction, looking for TGCTGA(C/G)TCAGCA, 0.
positive strand, negative direction, looking for TGCTGA(C/G)TCAGCA, 0.
positive strand, positive direction, looking for TGCTGA(C/G)TCAGCA, 0.
negative strand, positive direction, looking for TGCTGA(C/G)TCAGCA, 0.
complement, negative strand, negative direction, looking for ACGACT(C/G)AGTCGT, 0.
complement, positive strand, negative direction, looking for ACGACT(C/G)AGTCGT, 0.
complement, positive strand, positive direction, looking for ACGACT(C/G)AGTCGT, 0.
complement, negative strand, positive direction, looking for ACGACT(C/G)AGTCGT, 0.
inverse complement, negative strand, negative direction, looking for TGCTGA(C/G)TCAGCA, 0.
inverse complement, positive strand, negative direction, looking for TGCTGA(C/G)TCAGCA, 0.
inverse complement, positive strand, positive direction, looking for TGCTGA(C/G)TCAGCA, 0.
inverse complement, negative strand, positive direction, looking for TGCTGA(C/G)TCAGCA, 0.
inverse negative strand, negative direction, looking for ACGACT(C/G)AGTCGT, 0.
inverse positive strand, negative direction, looking for ACGACT(C/G)AGTCGT, 0.
inverse positive strand, positive direction, looking for ACGACT(C/G)AGTCGT, 0.
inverse negative strand, positive direction, looking for ACGACT(C/G)AGTCGT, 0.

References

↑ Akihito Otsuki, Mikiko Suzuki, Fumiki Katsuoka, Kouhei Tsuchida, Hiromi Suda, Masanobu Morita, Ritsuko Shimizu, Masayuki Yamamoto (February 2016). "Unique cistrome defined as CsMBE is strictly required for Nrf2-sMaf heterodimer function in cytoprotection". Free Radical Biology and Medicine. 91: 45–57. doi:10.1016/j.freeradbiomed.2015.12.005. PMID 26677805. Retrieved 21 August 2020.
↑ Kusunoki H, Motohashi H, Katsuoka F, Morohashi A, Yamamoto M, Tanaka T (April 2002). "Solution structure of the DNA-binding domain of MafG". Nat. Struct. Biol. 9 (4): 252–6. doi:10.1038/nsb771. PMID 11875518.
↑ Motoki Kyo, Tae Yamamoto, Hozumi Motohashi, Terue Kamiya, Toshihiro Kuroita, Toshiyuki Tanaka, James Douglas Engel, Bunsei Kawakami, Masayuki Yamamoto (13 February 2004). "Evaluation of MafG interaction with Maf recognition element arrays by surface plasmon resonance imaging technique". Genes to Cells. 9 (2). doi:10.1111/j.1356-9597.2004.00711.x. Retrieved 8 September 2020.

External links

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Met31p box gene transcriptions Metal responsive element gene transcriptions Middle sporulation element gene transcriptions Mig1p gene transcriptions Model samplings Motif ten element gene transcriptions Msn2,4p gene transcriptions Musashi binding element gene transcriptions MYB recognition element gene transcriptions Myelocytomatosis transcription factor gene transcriptions Myocyte enhancer factor gene transcriptions N-boxes Nanos/Pumilio response element Ndt80p gene transcriptions Nuclear factor 1 Nuclear factor 𝜿B Nuclear factor gene transcriptions Nuclear factor of activated T cell gene transcriptions (NFAT) Nuclear factor Y gene transcriptions Nutrient-sensing response element gene transcriptions Oaf1p gene transcriptions ORE1 binding site gene transcriptions p53 response element gene transcriptions P63 DNA-binding site gene transcriptions P box gene transcriptions Pdr1,3p gene transcriptions Peroxisome proliferator hormone response element gene transcriptions Phosphate 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@@ Line 2: / Line 2: @@
 Large "and small [musculoaponeurotic fibrosarcoma] Maf proteins are able to form homodimers that recognize the Maf recognition element (MARE)."<ref name=Otsuki>{{ cite journal
-|authors=Akihito Otsuki, Mikiko Suzuki, Fumiki Katsuoka, Kouhei Tsuchida, Hiromi Suda, Masanobu Morita, Ritsuko Shimizu, Masayuki Yamamoto
+|author=Akihito Otsuki, Mikiko Suzuki, Fumiki Katsuoka, Kouhei Tsuchida, Hiromi Suda, Masanobu Morita, Ritsuko Shimizu, Masayuki Yamamoto
 |title=Unique cistrome defined as CsMBE is strictly required for Nrf2-sMaf heterodimer function in cytoprotection
 |journal=Free Radical Biology and Medicine
@@ Line 16: / Line 16: @@
 |accessdate=21 August 2020 }}</ref>
-bZIP Maf is a domain found in Maf [[transcription factor]] [[protein]]s that contains a [[leucine zipper]] (bZIP) domain, which mediates the transcription factor's dimerization and DNA binding properties with DNA motifs termed the Maf recognition elements (MAREs) that are 13 or 14 [[base pairs]] long such that the two residues at the beginning of [[helix]] H2 are positioned to recognize the flanking region of the DNA.<ref name=Kusunoki>{{ cite journal |authors=Kusunoki H, Motohashi H, Katsuoka F, Morohashi A, Yamamoto M, Tanaka T
+bZIP Maf is a domain found in Maf [[transcription factor]] [[protein]]s that contains a [[leucine zipper]] (bZIP) domain, which mediates the transcription factor's dimerization and DNA binding properties with DNA motifs termed the Maf recognition elements (MAREs) that are 13 or 14 [[base pairs]] long such that the two residues at the beginning of [[helix]] H2 are positioned to recognize the flanking region of the DNA.<ref name=Kusunoki>{{ cite journal |author=Kusunoki H, Motohashi H, Katsuoka F, Morohashi A, Yamamoto M, Tanaka T
 | title = Solution structure of the DNA-binding domain of MafG
 | journal = Nat. Struct. Biol.
@@ Line 34: / Line 34: @@
 "Maf factors recognize relatively long palindromic DNA sequences, TGCTGA(G/C)TCAGCA and TGCTGA(GC/CG)TCAGCA, which are now known as Maf recognition elements (MAREs)."<ref name=Kyo>{{ cite journal
-|authors=Motoki Kyo, Tae Yamamoto, Hozumi Motohashi, Terue Kamiya, Toshihiro Kuroita, Toshiyuki Tanaka, James Douglas Engel, Bunsei Kawakami, Masayuki Yamamoto
+|author=Motoki Kyo, Tae Yamamoto, Hozumi Motohashi, Terue Kamiya, Toshihiro Kuroita, Toshiyuki Tanaka, James Douglas Engel, Bunsei Kawakami, Masayuki Yamamoto
 |title=Evaluation of MafG interaction with Maf recognition element arrays by surface plasmon resonance imaging technique
 |journal=Genes to Cells
@@ Line 51: / Line 51: @@
 Copying an apparent consensus sequence for the MARE of TGCTGA or TCAGCA and putting it in "⌘F" finds none located between ZSCAN22 and A1BG but using TCAGCA alone finds five between ZNF497 and A1BG as can be found by the computer programs.
+For the Basic programs testing consensus sequence TGCTGA(C/G)TCAGCA (starting with SuccessablesMARE.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:
+# negative strand, negative direction, looking for TGCTGA(C/G)TCAGCA, 0.
+# positive strand, negative direction, looking for TGCTGA(C/G)TCAGCA, 0.
+# positive strand, positive direction, looking for TGCTGA(C/G)TCAGCA, 0.
+# negative strand, positive direction, looking for TGCTGA(C/G)TCAGCA, 0.
+# complement, negative strand, negative direction, looking for ACGACT(C/G)AGTCGT, 0.
+# complement, positive strand, negative direction, looking for ACGACT(C/G)AGTCGT, 0.
+# complement, positive strand, positive direction, looking for ACGACT(C/G)AGTCGT, 0.
+# complement, negative strand, positive direction, looking for ACGACT(C/G)AGTCGT, 0.
+# inverse complement, negative strand, negative direction, looking for TGCTGA(C/G)TCAGCA, 0.
+# inverse complement, positive strand, negative direction, looking for TGCTGA(C/G)TCAGCA, 0.
+# inverse complement, positive strand, positive direction, looking for TGCTGA(C/G)TCAGCA, 0.
+# inverse complement, negative strand, positive direction, looking for TGCTGA(C/G)TCAGCA, 0.
+# inverse negative strand, negative direction, looking for ACGACT(C/G)AGTCGT, 0.
+# inverse positive strand, negative direction, looking for ACGACT(C/G)AGTCGT, 0.
+# inverse positive strand, positive direction, looking for ACGACT(C/G)AGTCGT, 0.
+# inverse negative strand, positive direction, looking for ACGACT(C/G)AGTCGT, 0.
 ==See also==
 {{div col|colwidth=20em}}
+* [[A1BG gene transcription core promoters]]
+* [[A1BG gene transcriptions]]
+* [[A1BG regulatory elements and regions]]
+* [[A1BG response element negative results]]
+* [[A1BG response element positive results]]
 * [[Complex locus A1BG and ZNF497]]
-* [[Transcription factor]]
 {{Div col end}}
@@ Line 62: / Line 84: @@
 ==External links==
+* [http://www.genome.jp/ GenomeNet KEGG database]
+* [http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene Home - Gene - NCBI]
+* [http://www.ncbi.nlm.nih.gov/sites/gquery NCBI All Databases Search]
+* [http://www.ncbi.nlm.nih.gov/ncbisearch/ NCBI Site Search]
+* [http://www.ncbi.nlm.nih.gov/pccompound PubChem Public Chemical Database]
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@@ Line 67: / Line 94: @@
 <!-- footer categories -->
-[[Category:Resources last modified in September 2020]]
+[[Category:Resources last modified in February 2021]]

Maf recognition element gene transcriptions: Difference between revisions

Latest revision as of 03:52, 3 February 2021

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