Rlm1p gene transcriptions: Difference between revisions

Associate Editor(s)-in-Chief: Henry A. Hoff

Human genes

Consensus sequences

The upstream activating sequence (UAS) for Rlm1p is 5'-CTA(T/A)(T/A)(T/A)(T/A)TAG-3' regarding maintenance of cell integrity [69].^[1]

RLM samplings

Copying the apparent consensus sequence for Rlm1p (CTATATATAG) and putting it in "⌘F" finds none located between ZSCAN22 and none between ZNF497 and A1BG as can be found by the computer programs.

For the Basic programs testing consensus sequence CTA(A/T)(A/T)(A/T)(A/T)TAG (starting with SuccessablesRLM.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:

negative strand, negative direction, looking for CTA(A/T)(A/T)(A/T)(A/T)TAG, 0.
positive strand, negative direction, looking for CTA(A/T)(A/T)(A/T)(A/T)TAG, 0.
positive strand, positive direction, looking for CTA(A/T)(A/T)(A/T)(A/T)TAG, 0.
negative strand, positive direction, looking for CTA(A/T)(A/T)(A/T)(A/T)TAG, 0.
complement, negative strand, negative direction, looking for GAT(A/T)(A/T)(A/T)(A/T)ATC, 0.
complement, positive strand, negative direction, looking for GAT(A/T)(A/T)(A/T)(A/T)ATC, 0.
complement, positive strand, positive direction, looking for GAT(A/T)(A/T)(A/T)(A/T)ATC, 0.
complement, negative strand, positive direction, looking for GAT(A/T)(A/T)(A/T)(A/T)ATC, 0.
inverse complement, negative strand, negative direction, looking for CTA(A/T)(A/T)(A/T)(A/T)TAG, 0.
inverse complement, positive strand, negative direction, looking for CTA(A/T)(A/T)(A/T)(A/T)TAG, 0.
inverse complement, positive strand, positive direction, looking for CTA(A/T)(A/T)(A/T)(A/T)TAG, 0.
inverse complement, negative strand, positive direction, looking for CTA(A/T)(A/T)(A/T)(A/T)TAG, 0.
inverse negative strand, negative direction, looking for GAT(A/T)(A/T)(A/T)(A/T)ATC, 0.
inverse positive strand, negative direction, looking for GAT(A/T)(A/T)(A/T)(A/T)ATC, 0.
inverse positive strand, positive direction, looking for GAT(A/T)(A/T)(A/T)(A/T)ATC, 0.
inverse negative strand, positive direction, looking for GAT(A/T)(A/T)(A/T)(A/T)ATC, 0.

References

↑ Hongting Tang, Yanling Wu, Jiliang Deng, Nanzhu Chen, Zhaohui Zheng, Yongjun Wei, Xiaozhou Luo, and Jay D. Keasling (6 August 2020). "Promoter Architecture and Promoter Engineering in Saccharomyces cerevisiae". Metabolites. 10 (8): 320–39. doi:10.3390/metabo10080320. PMID 32781665 Check |pmid= value (help). Retrieved 18 September 2020.

External links

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Met31p box gene transcriptions Metal responsive element gene transcriptions Middle sporulation element gene transcriptions Mig1p gene transcriptions Model samplings Motif ten element gene transcriptions Msn2,4p gene transcriptions Musashi binding element gene transcriptions MYB recognition element gene transcriptions Myelocytomatosis transcription factor gene transcriptions Myocyte enhancer factor gene transcriptions N-boxes Nanos/Pumilio response element Ndt80p gene transcriptions Nuclear factor 1 Nuclear factor 𝜿B Nuclear factor gene transcriptions Nuclear factor of activated T cell gene transcriptions (NFAT) Nuclear factor Y gene transcriptions Nutrient-sensing response element gene transcriptions Oaf1p gene transcriptions ORE1 binding site gene transcriptions p53 response element gene transcriptions P63 DNA-binding site gene transcriptions P box gene transcriptions Pdr1,3p gene transcriptions Peroxisome proliferator hormone response element gene transcriptions Phosphate starvation-response transcription factor gene transcriptions Pollen1 element gene transcriptions Polycomb response element gene transcriptions Preinitiation complex Preinitiation complex gene transcriptions Pribnow box gene transcriptions Prolamin box gene transcriptions Promoter gene transcriptions Proximal promoter gene transcriptions Promoter occurrence gene transcriptions Pyrimidine box gene transcriptions Q element gene transcriptions Rap1 regulatory factor gene transcriptions Reb1 general regulatory factor gene transcriptions Retinoblastoma control element gene transcriptions Retinoic acid response element gene transcriptions Rgt1p gene transcriptions Rlm1p gene transcriptions RNA polymerase II gene transcriptions RNA polymerase II holoenzyme complex Root specific element gene transcriptions ROR-response element gene transcriptions Rox1p gene transcriptions Rpn4p gene transcriptions R response element gene transcriptions SARE gene transcriptions Seed-specific element gene transcriptions Serum response element gene transcriptions Servenius sequence gene transcriptions Shoot specific element gene transcriptions Shue boxes Sip4p gene transcriptions Smp1p gene transcriptions Sp1 (Berberich) elements Sp1 gene transcriptions Spaceflight gene expressions Specificity protein gene transcriptions STAT gene transcriptions Ste12p gene transcriptions Sterol response element gene transcriptions Sucrose box gene transcriptions Synaptic Activity-Responsive Elements TACTAAC box gene transcriptions TAGteam gene transcriptions Tapetum box gene transcriptions TATA binding protein associated factor gene transcriptions TATA binding protein gene transcriptions TATA box actin/cytoskeleton/contractile family TATA box albumin family TATA box aldolase family TATA box alkaline phosphatase family TATA box annexin family TATA box cytochrome superfamily TATA box gene transcriptions TATA box heat shock family TATA box histone family TATA box human genes TATA box keratin family TATA 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@@ Line 20: / Line 20: @@
 |accessdate=18 September 2020 }}</ref>
-==Samplings==
+==RLM samplings==
 Copying the apparent consensus sequence for Rlm1p (CTATATATAG) and putting it in "⌘F" finds none located between ZSCAN22 and none between ZNF497 and A1BG as can be found by the computer programs.
-For the Basic programs (starting with SuccessablesRlm1p.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are looking for, and found:
+For the Basic programs testing consensus sequence CTA(A/T)(A/T)(A/T)(A/T)TAG (starting with SuccessablesRLM.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:
-# negative strand in the negative direction is SuccessablesRlm1p--.bas, looking for 3'-C-T-A-(T/A)-(T/A)-(T/A)-(T/A)-T-A-G-5', 0.
+# negative strand, negative direction, looking for CTA(A/T)(A/T)(A/T)(A/T)TAG, 0.
+# positive strand, negative direction, looking for CTA(A/T)(A/T)(A/T)(A/T)TAG, 0.
+# positive strand, positive direction, looking for CTA(A/T)(A/T)(A/T)(A/T)TAG, 0.
+# negative strand, positive direction, looking for CTA(A/T)(A/T)(A/T)(A/T)TAG, 0.
+# complement, negative strand, negative direction, looking for GAT(A/T)(A/T)(A/T)(A/T)ATC, 0.
+# complement, positive strand, negative direction, looking for GAT(A/T)(A/T)(A/T)(A/T)ATC, 0.
+# complement, positive strand, positive direction, looking for GAT(A/T)(A/T)(A/T)(A/T)ATC, 0.
+# complement, negative strand, positive direction, looking for GAT(A/T)(A/T)(A/T)(A/T)ATC, 0.
+# inverse complement, negative strand, negative direction, looking for CTA(A/T)(A/T)(A/T)(A/T)TAG, 0.
+# inverse complement, positive strand, negative direction, looking for CTA(A/T)(A/T)(A/T)(A/T)TAG, 0.
+# inverse complement, positive strand, positive direction, looking for CTA(A/T)(A/T)(A/T)(A/T)TAG, 0.
+# inverse complement, negative strand, positive direction, looking for CTA(A/T)(A/T)(A/T)(A/T)TAG, 0.
+# inverse negative strand, negative direction, looking for GAT(A/T)(A/T)(A/T)(A/T)ATC, 0.
+# inverse positive strand, negative direction, looking for GAT(A/T)(A/T)(A/T)(A/T)ATC, 0.
+# inverse positive strand, positive direction, looking for GAT(A/T)(A/T)(A/T)(A/T)ATC, 0.
+# inverse negative strand, positive direction, looking for GAT(A/T)(A/T)(A/T)(A/T)ATC, 0.
 ==See also==

Rlm1p gene transcriptions: Difference between revisions

Latest revision as of 05:55, 22 February 2021

Contents

Human genes

Consensus sequences

RLM samplings

See also

References

External links

Navigation menu

Rlm1p gene transcriptions: Difference between revisions

Latest revision as of 05:55, 22 February 2021

Human genes

Consensus sequences

RLM samplings

See also

References

External links

Navigation menu

Search