Xbp1p gene transcriptions: Difference between revisions

Associate Editor(s)-in-Chief: Henry A. Hoff

Transcription factor for the XhoI site-binding protein 1 protein (Xbp1p) binds to the promoters of CLN1, CYS3, SMF2 induced by stress of starvation to function as a transcriptional repressor.^[1]

Human genes

Interactions

Consensus sequences

The upstream activating sequence (UAS) for the Xbp1p is GcCTCGA(G/A)G(C/A)g(a/g).^[2]

Xbp samplings

Copying 5'-GCCTCG-3' in "⌘F" yields none between ZSCAN22 and A1BG and none between ZNF497 and A1BG as can be found by the computer programs.

For the Basic programs testing consensus sequence GcCTCGA(G/A)G(C/A)g(a/g) (starting with SuccessablesAAA.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:

negative strand, negative direction, looking for GCCTCGA(A/G)G(A/C)G(A/G), 0.
positive strand, negative direction, looking for GCCTCGA(A/G)G(A/C)G(A/G), 0.
positive strand, positive direction, looking for GCCTCGA(A/G)G(A/C)G(A/G), 0.
negative strand, positive direction, looking for GCCTCGA(A/G)G(A/C)G(A/G), 0.
complement, negative strand, negative direction, looking for CGGAGCT(C/T)C(G/T)C(C/T), 0.
complement, positive strand, negative direction, looking for CGGAGCT(C/T)C(G/T)C(C/T), 0.
complement, positive strand, positive direction, looking for CGGAGCT(C/T)C(G/T)C(C/T), 0.
complement, negative strand, positive direction, looking for CGGAGCT(C/T)C(G/T)C(C/T), 0.
inverse complement, negative strand, negative direction, looking for (C/T)C(G/T)C(C/T)TCGAGGC, 0.
inverse complement, positive strand, negative direction, looking for (C/T)C(G/T)C(C/T)TCGAGGC, 0.
inverse complement, positive strand, positive direction, looking for (C/T)C(G/T)C(C/T)TCGAGGC, 0.
inverse complement, negative strand, positive direction, looking for (C/T)C(G/T)C(C/T)TCGAGGC, 0.
inverse negative strand, negative direction, looking for (A/G)G(A/C)G(A/G)AGCTCCG, 0.
inverse positive strand, negative direction, looking for (A/G)G(A/C)G(A/G)AGCTCCG, 0.
inverse positive strand, positive direction, looking for (A/G)G(A/C)G(A/G)AGCTCCG, 0.
inverse negative strand, positive direction, looking for (A/G)G(A/C)G(A/G)AGCTCCG, 0.

Acknowledgements

The content on this page was first contributed by: Henry A. Hoff.

References

↑ Bernard Mai and Linda Breeden (November 1997). "Xbp1, a stress-induced transcriptional repressor of the Saccharomyces cerevisiae Swi4/Mbp1 family". Molecular and Cellular Biology. 17 (11): 6491–6501. doi:10.1128/MCB.17.11.6491. Retrieved 10 March 2021.
↑ Hongting Tang, Yanling Wu, Jiliang Deng, Nanzhu Chen, Zhaohui Zheng, Yongjun Wei, Xiaozhou Luo, and Jay D. Keasling (6 August 2020). "Promoter Architecture and Promoter Engineering in Saccharomyces cerevisiae". Metabolites. 10 (8): 320–39. doi:10.3390/metabo10080320. PMID 32781665 Check |pmid= value (help). Retrieved 18 September 2020.

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transcriptions HMG box gene transcriptions HNF gene transcriptions Homeobox gene transcriptions Hsf1p gene transcriptions HY box gene transcriptions Hybrid C, A boxes Hybrid C, G boxes Hybrid C, T boxes Hypoxia-inducible factor gene transcriptions Hypoxia response elements I box gene transcriptions Immunoglobulin like domain containing family Initiator element gene transcriptions Initiator-like element gene transcriptions Inositol/choline-responsive elements Interaction gene transcriptions Interferon regulatory factors Inverse copy gene transcriptions Jasmonic acid-responsive element gene transcriptions K-boxes Kozak sequence gene transcriptions Kruppel-associated box gene transcriptions Krüppel-like factor gene transcriptions L box gene transcriptions Leu3 gene transcriptions M35 box gene transcriptions MADS box gene transcriptions Maf recognition element gene transcriptions M box gene transcriptions M-CAT boxes Mcm1 regulatory factor gene transcriptions Met3 gene transcriptions Met31p box gene transcriptions Metal responsive element gene transcriptions Middle sporulation element gene transcriptions Mig1p gene transcriptions Model samplings Motif ten element gene transcriptions Msn2,4p gene transcriptions Musashi binding element gene transcriptions MYB recognition element gene transcriptions Myelocytomatosis transcription factor gene transcriptions Myocyte enhancer factor gene transcriptions N-boxes Nanos/Pumilio response element Ndt80p gene transcriptions Nuclear factor 1 Nuclear factor 𝜿B Nuclear factor gene transcriptions Nuclear factor of activated T cell gene transcriptions (NFAT) Nuclear factor Y gene transcriptions Nutrient-sensing response element gene transcriptions Oaf1p gene transcriptions ORE1 binding site gene transcriptions p53 response element gene transcriptions P63 DNA-binding site gene transcriptions P box gene transcriptions Pdr1,3p gene transcriptions Peroxisome proliferator hormone response element gene transcriptions Phosphate starvation-response transcription factor gene transcriptions Pollen1 element gene transcriptions Polycomb response element gene transcriptions Preinitiation complex Preinitiation complex gene transcriptions Pribnow box gene transcriptions Prolamin box gene transcriptions Promoter gene transcriptions Proximal promoter gene transcriptions Promoter occurrence gene transcriptions Pyrimidine box gene transcriptions Q element gene transcriptions Rap1 regulatory factor gene transcriptions Reb1 general regulatory factor gene transcriptions Retinoblastoma control element gene transcriptions Retinoic acid response element gene transcriptions Rgt1p gene transcriptions Rlm1p gene transcriptions RNA polymerase II gene transcriptions RNA polymerase II holoenzyme complex Root specific element gene transcriptions ROR-response element gene transcriptions Rox1p gene transcriptions Rpn4p gene transcriptions R response element gene transcriptions SARE gene transcriptions Seed-specific element gene transcriptions Serum response element gene transcriptions Servenius sequence gene transcriptions Shoot specific element gene transcriptions Shue boxes Sip4p gene transcriptions Smp1p gene transcriptions Sp1 (Berberich) elements Sp1 gene transcriptions Spaceflight gene expressions Specificity protein gene transcriptions STAT gene transcriptions Ste12p gene transcriptions Sterol response element gene transcriptions Sucrose box gene transcriptions Synaptic Activity-Responsive Elements TACTAAC box gene transcriptions TAGteam gene transcriptions Tapetum box gene transcriptions TATA binding protein associated factor gene transcriptions TATA binding protein gene transcriptions TATA box actin/cytoskeleton/contractile family TATA box albumin family TATA box aldolase family TATA box alkaline phosphatase family TATA box annexin family TATA box cytochrome superfamily TATA box gene transcriptions TATA box heat shock family TATA box histone family TATA box human genes TATA box keratin family TATA 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transcriptions Transcription factory gene transcriptions Transcription start site gene transcriptions Translational control sequence gene transcriptions Tryptophan residue U box gene transcriptions Unfolded protein response element gene transcriptions Upstream repressor site 1 Upstream response element gene transcriptions Upstream stimulatory factor gene transcriptions UTR promoter gene transcriptions V and P box gene transcriptions V box gene transcriptions Vhr1p gene transcriptions Vitamin D response element gene transcriptions W box gene transcriptions X box gene transcriptions Xbp1p gene transcriptions X core promoter element gene transcriptions Xenobiotic response element gene transcriptions Xenobiotic responsive element gene transcriptions Yap1p,2p gene transcriptions Y box gene transcriptions YY1 gene transcriptions Zap1p gene transcriptions Z box gene transcriptions Zinc responsive element gene transcriptions

@@ Line 1: / Line 1: @@
 {{AE}} Henry A. Hoff
+Transcription factor for the XhoI site-binding protein 1 protein (Xbp1p) binds to the promoters of ''CLN1, CYS3, SMF2'' induced by stress of starvation to function as a transcriptional repressor.<ref name=Mai>{{ cite journal
+|author=Bernard Mai and Linda Breeden
+|title=Xbp1, a stress-induced transcriptional repressor of the Saccharomyces cerevisiae Swi4/Mbp1 family
+|journal=Molecular and Cellular Biology
+|date=November 1997
+|volume=17
+|issue=11
+|pages=6491-6501
+|url=https://mcb.asm.org/content/17/11/6491
+|arxiv=
+|bibcode=
+|doi=10.1128/MCB.17.11.6491
+|pmid=
+|accessdate=10 March 2021 }}</ref>
 ==Human genes==
@@ Line 26: / Line 41: @@
 Copying 5'-GCCTCG-3' in "⌘F" yields none between ZSCAN22 and A1BG and none between ZNF497 and A1BG as can be found by the computer programs.
-For the Basic programs testing consensus sequence AAAAAAAA (starting with SuccessablesAAA.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:
+For the Basic programs testing consensus sequence GcCTCGA(G/A)G(C/A)g(a/g) (starting with SuccessablesAAA.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:
-# negative strand, negative direction, looking for AAAAAAAA, 0.
+# negative strand, negative direction, looking for GCCTCGA(A/G)G(A/C)G(A/G), 0.
-# positive strand, negative direction, looking for AAAAAAAA, 0.
+# positive strand, negative direction, looking for GCCTCGA(A/G)G(A/C)G(A/G), 0.
-# positive strand, positive direction, looking for AAAAAAAA, 0.
+# positive strand, positive direction, looking for GCCTCGA(A/G)G(A/C)G(A/G), 0.
-# negative strand, positive direction, looking for AAAAAAAA, 0.
+# negative strand, positive direction, looking for GCCTCGA(A/G)G(A/C)G(A/G), 0.
-# complement, negative strand, negative direction, looking for TTTTTTTT, 0.
+# complement, negative strand, negative direction, looking for CGGAGCT(C/T)C(G/T)C(C/T), 0.
-# complement, positive strand, negative direction, looking for TTTTTTTT, 0.
+# complement, positive strand, negative direction, looking for CGGAGCT(C/T)C(G/T)C(C/T), 0.
-# complement, positive strand, positive direction, looking for TTTTTTTT, 0.
+# complement, positive strand, positive direction, looking for CGGAGCT(C/T)C(G/T)C(C/T), 0.
-# complement, negative strand, positive direction, looking for TTTTTTTT, 0.
+# complement, negative strand, positive direction, looking for CGGAGCT(C/T)C(G/T)C(C/T), 0.
-# inverse complement, negative strand, negative direction, looking for TTTTTTTT, 0.
+# inverse complement, negative strand, negative direction, looking for (C/T)C(G/T)C(C/T)TCGAGGC, 0.
-# inverse complement, positive strand, negative direction, looking for TTTTTTTT, 0.
+# inverse complement, positive strand, negative direction, looking for (C/T)C(G/T)C(C/T)TCGAGGC, 0.
-# inverse complement, positive strand, positive direction, looking for TTTTTTTT, 0.
+# inverse complement, positive strand, positive direction, looking for (C/T)C(G/T)C(C/T)TCGAGGC, 0.
-# inverse complement, negative strand, positive direction, looking for TTTTTTTT, 0.
+# inverse complement, negative strand, positive direction, looking for (C/T)C(G/T)C(C/T)TCGAGGC, 0.
-# inverse negative strand, negative direction, looking for AAAAAAAA, 0.
+# inverse negative strand, negative direction, looking for (A/G)G(A/C)G(A/G)AGCTCCG, 0.
-# inverse positive strand, negative direction, looking for AAAAAAAA, 0.
+# inverse positive strand, negative direction, looking for (A/G)G(A/C)G(A/G)AGCTCCG, 0.
-# inverse positive strand, positive direction, looking for AAAAAAAA, 0.
+# inverse positive strand, positive direction, looking for (A/G)G(A/C)G(A/G)AGCTCCG, 0.
-# inverse negative strand, positive direction, looking for AAAAAAAA, 0.
+# inverse negative strand, positive direction, looking for (A/G)G(A/C)G(A/G)AGCTCCG, 0.
-===AAA UTRs===
-{{main|UTR promoter gene transcriptions}}
-===AAA core promoters===
-{{main|Core promoter gene transcriptions}}
-===AAA proximal promoters===
-{{main|Proximal promoter gene transcriptions}}
-===AAA distal promoters===
-{{main|Distal promoter gene transcriptions}}
 ==Acknowledgements==

Xbp1p gene transcriptions: Difference between revisions

Latest revision as of 14:40, 11 March 2021

Contents

Human genes

Interactions

Consensus sequences

Xbp samplings

Acknowledgements

See also

References

External links

Navigation menu

Xbp1p gene transcriptions: Difference between revisions

Latest revision as of 14:40, 11 March 2021

Human genes

Interactions

Consensus sequences

Xbp samplings

Acknowledgements

See also

References

External links

Navigation menu

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