Downstream promoter element gene transcriptions: Difference between revisions
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| pmid = 12515390 | | pmid = 12515390 | ||
| url = http://www.e-emm.or.kr/article/article_files/emm34-4-1.pdf }}</ref>"<ref name=Downstreampromoterelement/> | | url = http://www.e-emm.or.kr/article/article_files/emm34-4-1.pdf }}</ref>"<ref name=Downstreampromoterelement/> | ||
The DPE in "the ATP‐binding cassette subfamily G member 2 gene in the marine pufferfish ''Takifugu rubripes''" is 5'-AGTCTC-3'.<ref name=Matsumoto>{{ cite journal | |||
|author=Takuya Matsumoto, Saemi Kitajima, Chisato Yamamoto, Mitsuru Aoyagi, Yoshiharu Mitoma, Hiroyuki Harada and Yuji Nagashima | |||
|title=Cloning and tissue distribution of the ATP-binding cassette subfamily G member 2 gene in the marine pufferfish ''Takifugu rubripes'' | |||
|journal=Fisheries Science | |||
|date=9 August 2020 | |||
|volume=86 | |||
|issue= | |||
|pages=873-887 | |||
|url=https://researchmap.jp/hiroyukiharada/published_papers/29953426/attachment_file.pdf | |||
|arxiv= | |||
|bibcode= | |||
|doi=10.1007/s12562-020-01451-z | |||
|pmid= | |||
|accessdate=27 September 2020 }}</ref> | |||
==DPE-containing promoters== | ==DPE-containing promoters== |
Revision as of 16:59, 27 September 2020
Editor-In-Chief: Henry A. Hoff
The figure on the right is an overview of four core promoter elements: the B recognition element (BRE), TATA box, initiator element (Inr), and downstream promoter element (DPE), showing their respective consensus sequences and their distance from the transcription start site.[1]
"The downstream promoter element (DPE) is a core promoter element ... present in other species including humans and excluding Saccharomyces cerevisiae.[2]"[3]
"Like all core promoters, the DPE plays an important role in the initiation of gene transcription by RNA polymerase II."[3]
Gene transcriptions
"Transcription by RNA polymerase II is directed by cis-acting [close-acting] DNA sequences that typically consist of a core promoter along with regulatory elements, such as enhancers [trans-acting, or distant-acting, protein factors], that contain binding sites for sequence-specific transcriptional activator and/or repressor proteins."[4]
Core promoters
"[T]he core promoter [consists of] the DNA sequences, which encompass the transcription start site (within about -40 and +40 [nucleotides] relative to the +1 start site"[4].
"[T]he core sequence of the DPE is located at precisely +28 to +32 relative to the A+1 nucleotide in the Inr"[5]. It is located about 28–33 nucleotides downstream of the transcription start site.[2]
"DPE-dependent basal transcription depends highly on the Inr (and vice versa) and on correct spacing between the two elements.[6][4][7]"[8]
Initiator elements
"There is a strict requirement for spacing between the [Initiator element] Inr and DPE motifs, as an increase or decrease of 3 nucleotides in the distance between the Inr and DPE causes a seven- to eightfold reduction in transcription as well as a significant reduction in the binding of purified TFIID."[4]
Consensus sequences
"The DPE consensus sequence was originally thought to be RGWCGTG[6], however more recent studies have suggested it to be the similar but more general sequence RGWYV(T). In nucleic acid notation for DNA, R (puRine) stands for A/G (adenine or guanine, which are both purines); W (Weak) stands for A/T (adenine or thymine, which both form only two hydrogen bonds); Y (pYrimidine) stands for C/T (cytosine or thymine, which are both pyrimidines); and V stands for A/C/G.[2][1][9]"[3]
The DPE in "the ATP‐binding cassette subfamily G member 2 gene in the marine pufferfish Takifugu rubripes" is 5'-AGTCTC-3'.[10]
DPE-containing promoters
"The ... Drosophila Antennapedia P2 (Antp P2) [promoter contains] a 7-nucleotide sequence that conforms to the DPE consensus"[4]. GeneID: 40835 Antp Antennapedia [Drosophila melanogaster] is also known as Antp P2.[11] GeneID: 3204 HOXA7 homeobox A7 [ Homo sapiens ] is also known as ANTP and "[t]his gene is highly similar to the antennapedia (Antp) gene of Drosophila."[12] As GeneID: 3204 is " highly similar to the antennapedia (Antp) gene of Drosophila"[12], it may have a DPE like the Drosophila gene core promoter does.
"[T]he TATA-less Drosophila Abdominal-B (Abd-B) promoter [has a] partial DPE sequence"[4]. GeneID: 3205 HOXA9 homeobox A9 [ Homo sapiens] is also known as ABD-B and "[t]his gene is highly similar to the abdominal-B (Abd-B) gene of Drosophila."[13] GeneID: 3205 may also be TATA-less and have a DPE.
General transcription factor II Ds
The DPE "is required for the binding of purified [general transcription factor II D] TFIID to a subset of TATA-less promoters"[5].
"Photo-cross-linking analysis of purified TFIID with a TATA-less DPE-containing promoter revealed specific cross-linking of dTAFII60 [TAF6 GeneID: 6878] and dTAFII40 [TAF11 GeneID: 6882] to the DPE, with a higher efficiency of cross-linking to dTAFII60 than to dTAFII40. These data, combined with the previously well-characterized interactions between the two TAFs and their homology to histones H4 and H3, suggest that a dTAFII60–dTAFII40 heterotetramer binds to the DPE."[4]
Hypotheses
- The DPE is not used to transcribe A1BG.
Samplings
For the Basic programs (starting with SuccessablesDPE.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are expanded in the positive direction from 958 to 4445, are looking for, and found:
- negative strand in the negative direction (from ZSCAN22 to A1BG) is SuccessablesDPE--.bas, looking for 3'-A/G-G-A/T-C/T-A/C/G-5', 163, 3'-GGTCG-5', 35, 3'-AGATA-5', 234, 3'-GGTCC-5', 262, 3'-GGACA-5', 394, 3'-GGTCG-5', 403, 3'-GGTTC-5', 419, 3'-AGTCC-5', 441, 3'-GGACC-5', 459, 3'-AGATG-5', 481, 3'-GGTCG-5', 504, 3'-GGACC-5', 508, 3'-GGTCG-5', 540, 3'-GGTTC-5', 556, 3'-AGTCC-5', 578, 3'-GGACC-5', 596, 3'-AGATG-5', 624, 3'-GGTCC-5', 648, 3'-GGACA-5', 667, 3'-GGTCG-5', 676, 3'-GGTTC-5', 692, 3'-AGTCC-5', 714, 3'-GGTCG-5', 728, 3'-GGTCG-5', 737, 3'-AGATG-5', 758, 3'-GGACA-5', 801, 3'-GGTCG-5', 810, 3'-GGTCC-5', 850, 3'-GGTTC-5', 874, 3'-GGTCG-5', 895, 3'-GGACC-5', 899, 3'-AGACA-5', 919, 3'-GGTCC-5', 948, 3'-GGACA-5', 967, 3'-GGTCG-5', 976, 3'-AGTCC-5', 984, 3'-GGACC-5', 1015, 3'-GGTCG-5', 1061, 3'-AGACA-5', 1085, 3'-GGACA-5', 1131, 3'-GGTCG-5', 1140, 3'-GGTCG-5', 1194, 3'-GGACC-5', 1198, 3'-GGTTG-5', 1203, 3'-AGATG-5', 1224, 3'-GGACA-5', 1258, 3'-GGTCG-5', 1267, 3'-AGTCC-5', 1275, 3'-GGATC-5', 1306, 3'-GGTCA-5', 1352, 3'-AGACC-5', 1356, 3'-AGTTG-5', 1406, 3'-AGACA-5', 1452, 3'-GGTCC-5', 1460, 3'-AGTCG-5', 1486, 3'-AGTTG-5', 1513, 3'-AGATA-5', 1525, 3'-GGTCA-5', 1532, 3'-GGTCG-5', 1611, 3'-AGACA-5', 1776, 3'-GGTCG-5', 1785, 3'-GGTTC-5', 1817, 3'-GGACC-5', 1841, 3'-AGATG-5', 1867, 3'-GGACA-5', 1911, 3'-GGTCG-5', 1920, 3'-GGACC-5', 1959, 3'-GGTCG-5', 2005, 3'-GGACC-5', 2009, 3'-AGACA-5', 2029, 3'-GGTCC-5', 2077, 3'-GGATC-5', 2093, 3'-AGTCC-5', 2134, 3'-GGTTG-5', 2148, 3'-AGATG-5', 2169, 3'-GGTCA-5', 2211, 3'-AGTCC-5', 2250, 3'-GGTCG-5', 2264, 3'-GGACC-5', 2268, 3'-AGATG-5', 2294, 3'-GGACA-5', 2337, 3'-GGTCG-5', 2346, 3'-GGACC-5', 2385, 3'-GGTCG-5', 2431, 3'-GGACC-5', 2435, 3'-AGTTA-5', 2496, 3'-GGTCC-5', 2519, 3'-GGACA-5', 2538, 3'-GGTTG-5', 2547, 3'-AGTCC-5', 2587, 3'-GGTCA-5', 2601, 3'-GGTTG-5', 2610, 3'-AGTCG-5', 2650, 3'-GGTCA-5', 2654, 3'-GGACA-5', 2672, 3'-GGTCG-5', 2681, 3'-GGACC-5', 2720, 3'-GGTCG-5', 2766, 3'-GGACC-5', 2770, 3'-GGTTA-5', 2848, 3'-AGATG-5', 2988, 3'-GGATA-5', 2996, 3'-GGACA-5', 3061, 3'-GGTCG-5', 3070, 3'-AGTCC-5', 3110, 3'-GGTCG-5', 3124, 3'-GGACC-5', 3128, 3'-GGTTG-5', 3137, 3'-AGATG-5', 3158, 3'-GGACA-5', 3200, 3'-AGTCG-5', 3204, 3'-GGTCG-5', 3209, 3'-AGTCC-5', 3217, 3'-GGTCC-5', 3249, 3'-GGTTC-5', 3273, 3'-GGTCG-5', 3294, 3'-GGACC-5', 3298, 3'-AGACA-5', 3319, 3'-AGTCC-5', 3396, 3'-AGTTG-5', 3523, 3'-AGACA-5', 3556, 3'-GGTCC-5', 3564, 3'-GGACG-5', 3579, 3'-GGTCC-5', 3585, 3'-GGTCG-5', 3682, 3'-GGTCG-5', 3701, 3'-AGACG-5', 3706, 3'-GGTCG-5', 3731, 3'-GGACC-5', 3744, 3'-AGACC-5', 3835, 3'-AGTTC-5', 3844, 3'-GGACG-5', 3861, 3'-GGTCC-5', 3871, 3'-GGTCC-5', 3885, 3'-GGACC-5', 3906, 3'-GGTCC-5', 3951, 3'-GGACA-5', 3970, 3'-GGTTG-5', 3979, 3'-GGTTC-5', 4019, 3'-AGTTC-5', 4027, 3'-GGTCG-5', 4033, 3'-GGACC-5', 4037, 3'-AGATG-5', 4062, 3'-GGTCC-5', 4102, 3'-GGACA-5', 4121, 3'-GGTCG-5', 4130, 3'-AGTCC-5', 4138, 3'-GGTCC-5', 4170, 3'-AGTTC-5', 4178, 3'-GGACA-5', 4208, 3'-AGATG-5', 4212, 3'-GGTCC-5', 4253, 3'-GGTCG-5', 4261, 3'-GGACC-5', 4300, 3'-GGTCG-5', 4345, 3'-GGACC-5', 4349, 3'-GGACA-5', 4369, 3'-GGTCA-5', 4415, 3'-AGATG-5', 4430, 3'-AGTCC-5', 4436, 3'-GGTCG-5', 4480, 3'-AGTCG-5', 4489, 3'-GGACC-5', 4494, 3'-GGACC-5', 4546,
- negative strand in the positive direction (from ZNF497 to A1BG) is SuccessablesDPE-+.bas, looking for 3'-A/G-G-A/T-C/T-A/C/G-5', 73, 3'-GGACC-5' at 37, 3'-GGATG-5' at 59, 3'-GGTCA-5' at 153, 3'-AGATG-5' at 166, 3'-AGTCC-5' at 172, 3'-GGACC-5' at 187, 3'-GGTCC-5' at 218, 3'-GGTTC-5' at 305, 3'-GGACG-5' at 323, 3'-GGACG-5' at 359, 3'-AGACG-5' at 398, 3'-GGACG-5' at 410, 3'-AGACC-5' at 440, 3'-AGACA-5' at 712, 3'-AGTCC-5' at 757, 3'-AGATC-5' at 864, 3'-AGATC-5' at 964, 3'-AGTCG-5' at 1528, 3'-GGACG-5' at 1670, 3'-GGTCG-5' at 1687, 3'-GGACA-5' at 1693, 3'-AGTCC-5' at 1826, 3'-AGTCC-5' at 1841, 3'-GGACA-5' at 1869, 3'-GGATG-5' at 1878, 3'-GGTTC-5' at 1926, 3'-AGTTC-5' at 1987, 3'-AGTCC-5' at 2026, 3'-GGTCA-5' at 2035, 3'-AGTCA-5' at 2100, 3'-AGTTA-5' at 2134, 3'-GGTCA-5' at 2220, 3'-AGATC-5' at 2230, 3'-GGATG-5' at 2409, 3'-GGACA-5' at 2460, 3'-AGTCA-5' at 2607, 3'-AGTCA-5' at 2613, 3'-AGTCA-5' at 2618, 3'-GGATA-5' at 2659, 3'-AGTTA-5' at 2666, 3'-GGATG-5' at 2714, 3'-GGATA-5' at 2737, 3'-AGACC-5' at 2861, 3'-GGTTC-5' at 2922, 3'-AGTTC-5' at 2954, 3'-AGTCC-5' at 2998, 3'-GGTTA-5' at 3024, 3'-GGTTG-5' at 3050, 3'-AGTCC-5' at 3084, 3'-GGACA-5' at 3131, 3'-GGACC-5' at 3172, 3'-AGTCG-5' at 3283, 3'-AGTTA-5' at 3381, 3'-AGATG-5' at 3418, 3'-GGATG-5' at 3457, 3'-AGATG-5' at 3475, 3'-GGTTG-5' at 3490, 3'-GGACA-5' at 3530, 3'-GGACC-5' at 3545, 3'-AGACC-5' at 3550, 3'-GGATG-5' at 3574, 3'-GGTCA-5' at 3820, 3'-AGTCC-5' at 3863, 3'-AGACA-5' at 3893, 3'-GGTTC-5' at 4073, 3'-GGATC-5' at 4080, 3'-GGATG-5' at 4099, 3'-AGTTC-5' at 4200, 3'-GGACA-5' at 4252, 3'-GGTCA-5' at 4269, 3'-AGACG-5' at 4319, 3'-AGACA-5' at 4332, 3'-GGTCC-5' at 4420.
- positive strand in the negative direction is SuccessablesDPE+-.bas, looking for 3'-A/G-G-A/T-C/T-A/C/G-5', 101, 3'-GGACC-5', 32, 3'-AGATA-5', 57, 3'-GGATA-5', 74, 3'-AGTTG-5', 84, 3'-GGATA-5', 98, 3'-GGATA-5', 108, 3'-AGTCG-5', 157, 3'-AGACA-5', 170, 3'-GGTCA-5', 206, 3'-AGATG-5', 244, 3'-AGTTC-5', 253, 3'-AGACA-5', 422, 3'-GGATC-5', 430, 3'-GGTCA-5', 439, 3'-GGATC-5', 525, 3'-AGACA-5', 559, 3'-GGTCA-5', 568, 3'-GGTCA-5', 576, 3'-AGATC-5', 589, 3'-GGATC-5', 703, 3'-GGTCA-5', 712, 3'-AGTTC-5', 719, 3'-AGACC-5', 725, 3'-GGATG-5', 784, 3'-GGTTG-5', 862, 3'-AGATC-5', 877, 3'-AGATC-5', 972, 3'-GGTTG-5', 1028, 3'-GGACG-5', 1151, 3'-GGATC-5', 1167, 3'-AGTTC-5', 1177, 3'-GGTTG-5', 1319, 3'-AGATG-5', 1438, 3'-AGACA-5', 1569, 3'-AGATA-5', 1595, 3'-GGATC-5', 1812, 3'-AGATG-5', 1828, 3'-AGACC-5', 1834, 3'-AGATC-5', 1987, 3'-GGACA-5', 2117, 3'-AGACC-5', 2121, 3'-AGACC-5', 2145, 3'-AGATA-5', 2177, 3'-GGTTG-5', 2234, 3'-GGATC-5', 2239, 3'-GGTCA-5', 2248, 3'-AGACC-5', 2261, 3'-GGACA-5', 2271, 3'-GGTTG-5', 2398, 3'-AGATC-5', 2413, 3'-AGTCC-5', 2543, 3'-GGATC-5', 2574, 3'-GGTCA-5', 2585, 3'-AGTTG-5', 2592, 3'-AGACC-5', 2598, 3'-AGTTG-5', 2704, 3'-AGTTG-5', 2733, 3'-AGACA-5', 2880, 3'-AGATG-5', 2894, 3'-AGATG-5', 2905, 3'-AGACA-5', 2948, 3'-AGATA-5', 2981, 3'-GGATC-5', 3097, 3'-AGTTG-5', 3115, 3'-AGACC-5', 3121, 3'-GGTTG-5', 3261, 3'-AGATC-5', 3276, 3'-GGACA-5', 3389, 3'-AGACA-5', 3433, 3'-AGATA-5', 3465, 3'-AGATC-5', 3488, 3'-GGTTG-5', 3532, 3'-GGTTG-5', 3605, 3'-AGATG-5', 3620, 3'-AGATG-5', 3627, 3'-GGATA-5', 3655, 3'-GGACA-5', 3756, 3'-AGACC-5', 3761, 3'-GGTTG-5', 3804, 3'-GGTCG-5', 3813, 3'-GGACC-5', 3868, 3'-AGATG-5', 3919, 3'-GGTTG-5', 3945, 3'-GGATC-5', 4006, 3'-AGTTC-5', 4024, 3'-AGACC-5', 4030, 3'-AGTTG-5', 4096, 3'-AGTCC-5', 4126, 3'-GGATC-5', 4157, 3'-AGTTC-5', 4175, 3'-AGACA-5', 4181, 3'-AGACC-5', 4204, 3'-AGACG-5', 4235, 3'-GGATC-5', 4288, 3'-GGTCA-5', 4307, 3'-AGACC-5', 4365, 3'-AGTTC-5', 4417, 3'-GGACA-5', 4468, 3'-AGATC-5', 4475, 3'-AGTCC-5', 4500, 3'-AGACA-5', 4507,
- positive strand in the positive direction is SuccessablesDPE++.bas, looking for 3'-A/G-G-A/T-C/T-A/C/G-5', 159, 3'-GGTCC-5' at 8, 3'-GGTCC-5' at 33, 3'-GGACC-5' at 40, 3'-AGTCC-5' at 90, 3'-AGACA-5' at 98, 3'-AGACC-5' at 102, 3'-GGACA-5' at 144, 3'-GGTTC-5' at 177, 3'-GGACG-5' at 191, 3'-GGTCC-5' at 215, 3'-AGACG-5' at 223, 3'-AGACC-5' at 270, 3'-GGACC-5' at 286, 3'-GGTCG-5' at 329, 3'-GGTCC-5' at 424, 3'-GGACG-5' at 435, 3'-AGTCG-5' at 511, 3'-GGTCC-5' at 515, 3'-GGACC-5' at 598, 3'-GGTTG-5' at 607, 3'-AGTCG-5' at 613, 3'-GGTCG-5' at 617, 3'-GGTCG-5' at 623, 3'-GGATG-5' at 649, 3'-GGTCC-5' at 707, 3'-GGACG-5' at 807, 3'-AGTCG-5' at 831, 3'-GGTTG-5' at 843, 3'-GGACC-5' at 847, 3'-GGACA-5' at 891, 3'-GGACG-5' at 907, 3'-AGTCG-5' at 931, 3'-GGTTG-5' at 943, 3'-GGACC-5' at 947, 3'-GGACA-5' at 991, 3'-GGACG-5' at 1075, 3'-GGACG-5' at 1118, 3'-GGTCG-5' at 1127, 3'-GGTCC-5' at 1175, 3'-GGATG-5' at 1195, 3'-GGACC-5' at 1199, 3'-GGTCA-5' at 1250, 3'-AGTCG-5' at 1267, 3'-GGTCG-5' at 1271, 3'-GGTTG-5' at 1279, 3'-GGATG-5' at 1283, 3'-GGACG-5' at 1311, 3'-GGTCG-5' at 1357, 3'-GGTCG-5' at 1363, 3'-GGACG-5' at 1369, 3'-AGACC-5' at 1376, 3'-AGACG-5' at 1395, 3'-GGACG-5' at 1411, 3'-GGTCG-5' at 1457, 3'-GGTCG-5' at 1463, 3'-GGACG-5' at 1469, 3'-AGACC-5' at 1476, 3'-AGACG-5' at 1495, 3'-GGATG-5' at 1573, 3'-AGTCG-5' at 1603, 3'-AGTTG-5' at 1621, 3'-AGACG-5' at 1733, 3'-GGACG-5' at 1776, 3'-GGACC-5' at 1815, 3'-GGTCC-5' at 1855, 3'-GGACA-5' at 1860, 3'-AGACC-5' at 1864, 3'-GGTCC-5' at 1893, 3'-AGACC-5' at 1992, 3'-GGTTG-5' at 2012, 3'-GGTCA-5' at 2024, 3'-GGTCG-5' at 2052, 3'-AGTCA-5' at 2060, 3'-AGTCA-5' at 2098, 3'-AGTCG-5' at 2102, 3'-AGTCC-5' at 2115, 3'-AGATC-5' at 2167, 3'-AGACA-5' at 2182, 3'-AGTCG-5' at 2198, 3'-AGTTA-5' at 2233, 3'-GGACA-5' at 2250, 3'-AGACA-5' at 2260, 3'-AGACA-5' at 2308, 3'-GGTCC-5' at 2316, 3'-AGTCC-5' at 2372, 3'-AGTCG-5' at 2390, 3'-GGTTC-5' at 2398, 3'-GGACC-5' at 2433, 3'-GGATC-5' at 2481, 3'-GGACC-5' at 2501, 3'-AGTTC-5' at 2508, 3'-GGACG-5' at 2520, 3'-AGTCG-5' at 2526, 3'-GGACC-5' at 2569, 3'-GGTCC-5' at 2574, 3'-GGTTC-5' at 2593, 3'-GGTCA-5' at 2605, 3'-AGTTC-5' at 2615, 3'-AGTCC-5' at 2620, 3'-GGTCC-5' at 2780, 3'-AGACG-5' at 2856, 3'-GGTCC-5' at 2876, 3'-AGACC-5' at 2883, 3'-GGACC-5' at 2891, 3'-GGTTA-5' at 2908, 3'-AGACA-5' at 2925, 3'-AGTCA-5' at 2936, 3'-AGACA-5' at 2957, 3'-AGACG-5' at 2975, 3'-AGACC-5' at 2983, 3'-GGACC-5' at 2988, 3'-GGTCA-5' at 2996, 3'-GGTCC-5' at 3016, 3'-AGACC-5' at 3021, 3'-AGTCC-5' at 3034, 3'-AGTCG-5' at 3041, 3'-GGACC-5' at 3047, 3'-AGACG-5' at 3060, 3'-GGTCA-5' at 3082, 3'-GGTCC-5' at 3111, 3'-AGTCG-5' at 3155, 3'-GGTCG-5' at 3239, 3'-AGATA-5' at 3258, 3'-AGACG-5' at 3267, 3'-AGACG-5' at 3278, 3'-AGTTG-5' at 3290, 3'-GGACC-5' at 3296, 3'-AGACG-5' at 3306, 3'-AGACG-5' at 3358, 3'-GGACC-5' at 3362, 3'-GGTCA-5' at 3379, 3'-AGACC-5' at 3405, 3'-AGTTA-5' at 3424, 3'-GGACA-5' at 3434, 3'-GGACC-5' at 3496, 3'-GGTCC-5' at 3536, 3'-GGACA-5' at 3617, 3'-GGACA-5' at 3622, 3'-GGTTG-5' at 3633, 3'-GGACC-5' at 3679, 3'-GGTCC-5' at 3687, 3'-GGTCG-5' at 3720, 3'-AGTCC-5' at 3728, 3'-GGACC-5' at 3758, 3'-AGTCG-5' at 3775, 3'-GGACC-5' at 3787, 3'-GGTCA-5' at 3841, 3'-AGTCC-5' at 3868, 3'-AGTCG-5' at 3997, 3'-AGTCG-5' at 4023, 3'-GGTCC-5' at 4032, 3'-AGTCG-5' at 4052, 3'-AGATC-5' at 4064, 3'-AGATC-5' at 4076, 3'-GGACG-5' at 4231, 3'-AGTCA-5' at 4271, 3'-GGACC-5' at 4409, 3'-AGACC-5' at 4416, 3'-GGACC-5' at 4424.
- complement, negative strand, negative direction is SuccessablesDPEc--.bas, looking for 3'-C/T-C-A/T-A/G-T/C/G-5', 101, 3'-CCTGG-5', 32, 3'-TCTAT-5', 57, 3'-CCTAT-5', 74, 3'-TCAAC-5', 84, 3'-CCTAT-5', 98, 3'-CCTAT-5', 108, 3'-TCAGC-5', 157, 3'-TCTGT-5', 170, 3'-CCAGT-5', 206, 3'-TCTAC-5', 244, 3'-TCAAG-5', 253, 3'-TCTGT-5', 422, 3'-CCTAG-5', 430, 3'-CCAGT-5', 439, 3'-CCTAG-5', 525, 3'-TCTGT-5', 559, 3'-CCAGT-5', 568, 3'-CCAGT-5', 576, 3'-TCTAG-5', 589, 3'-CCTAG-5', 703, 3'-CCAGT-5', 712, 3'-TCAAG-5', 719, 3'-TCTGG-5', 725, 3'-CCTAC-5', 784, 3'-CCAAC-5', 862, 3'-TCTAG-5', 877, 3'-TCTAG-5', 972, 3'-CCAAC-5', 1028, 3'-CCTGC-5', 1151, 3'-CCTAG-5', 1167, 3'-TCAAG-5', 1177, 3'-CCAAC-5', 1319, 3'-TCTAC-5', 1438, 3'-TCTGT-5', 1569, 3'-TCTAT-5', 1595, 3'-CCTAG-5', 1812, 3'-TCTAC-5', 1828, 3'-TCTGG-5', 1834, 3'-TCTAG-5', 1987, 3'-CCTGT-5', 2117, 3'-TCTGG-5', 2121, 3'-TCTGG-5', 2145, 3'-TCTAT-5', 2177, 3'-CCAAC-5', 2234, 3'-CCTAG-5', 2239, 3'-CCAGT-5', 2248, 3'-TCTGG-5', 2261, 3'-CCTGT-5', 2271, 3'-CCAAC-5', 2398, 3'-TCTAG-5', 2413, 3'-TCAGG-5', 2543, 3'-CCTAG-5', 2574, 3'-CCAGT-5', 2585, 3'-TCAAC-5', 2592, 3'-TCTGG-5', 2598, 3'-TCAAC-5', 2704, 3'-TCAAC-5', 2733, 3'-TCTGT-5', 2880, 3'-TCTAC-5', 2894, 3'-TCTAC-5', 2905, 3'-TCTGT-5', 2948, 3'-TCTAT-5', 2981, 3'-CCTAG-5', 3097, 3'-TCAAC-5', 3115, 3'-TCTGG-5', 3121, 3'-CCAAC-5', 3261, 3'-TCTAG-5', 3276, 3'-CCTGT-5', 3389, 3'-TCTGT-5', 3433, 3'-TCTAT-5', 3465, 3'-TCTAG-5', 3488, 3'-CCAAC-5', 3532, 3'-CCAAC-5', 3605, 3'-TCTAC-5', 3620, 3'-TCTAC-5', 3627, 3'-CCTAT-5', 3655, 3'-CCTGT-5', 3756, 3'-TCTGG-5', 3761, 3'-CCAAC-5', 3804, 3'-CCAGC-5', 3813, 3'-CCTGG-5', 3868, 3'-TCTAC-5', 3919, 3'-CCAAC-5', 3945, 3'-CCTAG-5', 4006, 3'-TCAAG-5', 4024, 3'-TCTGG-5', 4030, 3'-TCAAC-5', 4096, 3'-TCAGG-5', 4126, 3'-CCTAG-5', 4157, 3'-TCAAG-5', 4175, 3'-TCTGT-5', 4181, 3'-TCTGG-5', 4204, 3'-TCTGC-5', 4235, 3'-CCTAG-5', 4288, 3'-CCAGT-5', 4307, 3'-TCTGG-5', 4365, 3'-TCAAG-5', 4417, 3'-CCTGT-5', 4468, 3'-TCTAG-5', 4475, 3'-TCAGG-5', 4500, 3'-TCTGT-5', 4507,
- complement, negative strand, positive direction is SuccessablesDPEc-+.bas, looking for 3'-C/T-C-A/T-A/G-T/C/G-5', 159, 3'-CCAGG-5' at 8, 3'-CCAGG-5' at 33, 3'-CCTGG-5' at 40, 3'-TCAGG-5' at 90, 3'-TCTGT-5' at 98, 3'-TCTGG-5' at 102, 3'-CCTGT-5' at 144, 3'-CCAAG-5' at 177, 3'-CCTGC-5' at 191, 3'-CCAGG-5' at 215, 3'-TCTGC-5' at 223, 3'-TCTGG-5' at 270, 3'-CCTGG-5' at 286, 3'-CCAGC-5' at 329, 3'-CCAGG-5' at 424, 3'-CCTGC-5' at 435, 3'-TCAGC-5' at 511, 3'-CCAGG-5' at 515, 3'-CCTGG-5' at 598, 3'-CCAAC-5' at 607, 3'-TCAGC-5' at 613, 3'-CCAGC-5' at 617, 3'-CCAGC-5' at 623, 3'-CCTAC-5' at 649, 3'-CCAGG-5' at 707, 3'-CCTGC-5' at 807, 3'-TCAGC-5' at 831, 3'-CCAAC-5' at 843, 3'-CCTGG-5' at 847, 3'-CCTGT-5' at 891, 3'-CCTGC-5' at 907, 3'-TCAGC-5' at 931, 3'-CCAAC-5' at 943, 3'-CCTGG-5' at 947, 3'-CCTGT-5' at 991, 3'-CCTGC-5' at 1075, 3'-CCTGC-5' at 1118, 3'-CCAGC-5' at 1127, 3'-CCAGG-5' at 1175, 3'-CCTAC-5' at 1195, 3'-CCTGG-5' at 1199, 3'-CCAGT-5' at 1250, 3'-TCAGC-5' at 1267, 3'-CCAGC-5' at 1271, 3'-CCAAC-5' at 1279, 3'-CCTAC-5' at 1283, 3'-CCTGC-5' at 1311, 3'-CCAGC-5' at 1357, 3'-CCAGC-5' at 1363, 3'-CCTGC-5' at 1369, 3'-TCTGG-5' at 1376, 3'-TCTGC-5' at 1395, 3'-CCTGC-5' at 1411, 3'-CCAGC-5' at 1457, 3'-CCAGC-5' at 1463, 3'-CCTGC-5' at 1469, 3'-TCTGG-5' at 1476, 3'-TCTGC-5' at 1495, 3'-CCTAC-5' at 1573, 3'-TCAGC-5' at 1603, 3'-TCAAC-5' at 1621, 3'-TCTGC-5' at 1733, 3'-CCTGC-5' at 1776, 3'-CCTGG-5' at 1815, 3'-CCAGG-5' at 1855, 3'-CCTGT-5' at 1860, 3'-TCTGG-5' at 1864, 3'-CCAGG-5' at 1893, 3'-TCTGG-5' at 1992, 3'-CCAAC-5' at 2012, 3'-CCAGT-5' at 2024, 3'-CCAGC-5' at 2052, 3'-TCAGT-5' at 2060, 3'-TCAGT-5' at 2098, 3'-TCAGC-5' at 2102, 3'-TCAGG-5' at 2115, 3'-TCTAG-5' at 2167, 3'-TCTGT-5' at 2182, 3'-TCAGC-5' at 2198, 3'-TCAAT-5' at 2233, 3'-CCTGT-5' at 2250, 3'-TCTGT-5' at 2260, 3'-TCTGT-5' at 2308, 3'-CCAGG-5' at 2316, 3'-TCAGG-5' at 2372, 3'-TCAGC-5' at 2390, 3'-CCAAG-5' at 2398, 3'-CCTGG-5' at 2433, 3'-CCTAG-5' at 2481, 3'-CCTGG-5' at 2501, 3'-TCAAG-5' at 2508, 3'-CCTGC-5' at 2520, 3'-TCAGC-5' at 2526, 3'-CCTGG-5' at 2569, 3'-CCAGG-5' at 2574, 3'-CCAAG-5' at 2593, 3'-CCAGT-5' at 2605, 3'-TCAAG-5' at 2615, 3'-TCAGG-5' at 2620, 3'-CCAGG-5' at 2780, 3'-TCTGC-5' at 2856, 3'-CCAGG-5' at 2876, 3'-TCTGG-5' at 2883, 3'-CCTGG-5' at 2891, 3'-CCAAT-5' at 2908, 3'-TCTGT-5' at 2925, 3'-TCAGT-5' at 2936, 3'-TCTGT-5' at 2957, 3'-TCTGC-5' at 2975, 3'-TCTGG-5' at 2983, 3'-CCTGG-5' at 2988, 3'-CCAGT-5' at 2996, 3'-CCAGG-5' at 3016, 3'-TCTGG-5' at 3021, 3'-TCAGG-5' at 3034, 3'-TCAGC-5' at 3041, 3'-CCTGG-5' at 3047, 3'-TCTGC-5' at 3060, 3'-CCAGT-5' at 3082, 3'-CCAGG-5' at 3111, 3'-TCAGC-5' at 3155, 3'-CCAGC-5' at 3239, 3'-TCTAT-5' at 3258, 3'-TCTGC-5' at 3267, 3'-TCTGC-5' at 3278, 3'-TCAAC-5' at 3290, 3'-CCTGG-5' at 3296, 3'-TCTGC-5' at 3306, 3'-TCTGC-5' at 3358, 3'-CCTGG-5' at 3362, 3'-CCAGT-5' at 3379, 3'-TCTGG-5' at 3405, 3'-TCAAT-5' at 3424, 3'-CCTGT-5' at 3434, 3'-CCTGG-5' at 3496, 3'-CCAGG-5' at 3536, 3'-CCTGT-5' at 3617, 3'-CCTGT-5' at 3622, 3'-CCAAC-5' at 3633, 3'-CCTGG-5' at 3679, 3'-CCAGG-5' at 3687, 3'-CCAGC-5' at 3720, 3'-TCAGG-5' at 3728, 3'-CCTGG-5' at 3758, 3'-TCAGC-5' at 3775, 3'-CCTGG-5' at 3787, 3'-CCAGT-5' at 3841, 3'-TCAGG-5' at 3868, 3'-TCAGC-5' at 3997, 3'-TCAGC-5' at 4023, 3'-CCAGG-5' at 4032, 3'-TCAGC-5' at 4052, 3'-TCTAG-5' at 4064, 3'-TCTAG-5' at 4076, 3'-CCTGC-5' at 4231, 3'-TCAGT-5' at 4271, 3'-CCTGG-5' at 4409, 3'-TCTGG-5' at 4416, 3'-CCTGG-5' at 4424.
- complement, positive strand, negative direction is SuccessablesDPEc+-.bas, looking for 3'-C/T-C-A/T-A/G-T/C/G-5', 101, 3'-GGACC-5', 32, 3'-AGATA-5', 57, 3'-GGATA-5', 74, 3'-AGTTG-5', 84, 3'-GGATA-5', 98, 3'-GGATA-5', 108, 3'-AGTCG-5', 157, 3'-AGACA-5', 170, 3'-GGTCA-5', 206, 3'-AGATG-5', 244, 3'-AGTTC-5', 253, 3'-AGACA-5', 422, 3'-GGATC-5', 430, 3'-GGTCA-5', 439, 3'-GGATC-5', 525, 3'-AGACA-5', 559, 3'-GGTCA-5', 568, 3'-GGTCA-5', 576, 3'-AGATC-5', 589, 3'-GGATC-5', 703, 3'-GGTCA-5', 712, 3'-AGTTC-5', 719, 3'-AGACC-5', 725, 3'-GGATG-5', 784, 3'-GGTTG-5', 862, 3'-AGATC-5', 877, 3'-AGATC-5', 972, 3'-GGTTG-5', 1028, 3'-GGACG-5', 1151, 3'-GGATC-5', 1167, 3'-AGTTC-5', 1177, 3'-GGTTG-5', 1319, 3'-AGATG-5', 1438, 3'-AGACA-5', 1569, 3'-AGATA-5', 1595, 3'-GGATC-5', 1812, 3'-AGATG-5', 1828, 3'-AGACC-5', 1834, 3'-AGATC-5', 1987, 3'-GGACA-5', 2117, 3'-AGACC-5', 2121, 3'-AGACC-5', 2145, 3'-AGATA-5', 2177, 3'-GGTTG-5', 2234, 3'-GGATC-5', 2239, 3'-GGTCA-5', 2248, 3'-AGACC-5', 2261, 3'-GGACA-5', 2271, 3'-GGTTG-5', 2398, 3'-AGATC-5', 2413, 3'-AGTCC-5', 2543, 3'-GGATC-5', 2574, 3'-GGTCA-5', 2585, 3'-AGTTG-5', 2592, 3'-AGACC-5', 2598, 3'-AGTTG-5', 2704, 3'-AGTTG-5', 2733, 3'-AGACA-5', 2880, 3'-AGATG-5', 2894, 3'-AGATG-5', 2905, 3'-AGACA-5', 2948, 3'-AGATA-5', 2981, 3'-GGATC-5', 3097, 3'-AGTTG-5', 3115, 3'-AGACC-5', 3121, 3'-GGTTG-5', 3261, 3'-AGATC-5', 3276, 3'-GGACA-5', 3389, 3'-AGACA-5', 3433, 3'-AGATA-5', 3465, 3'-AGATC-5', 3488, 3'-GGTTG-5', 3532, 3'-GGTTG-5', 3605, 3'-AGATG-5', 3620, 3'-AGATG-5', 3627, 3'-GGATA-5', 3655, 3'-GGACA-5', 3756, 3'-AGACC-5', 3761, 3'-GGTTG-5', 3804, 3'-GGTCG-5', 3813, 3'-GGACC-5', 3868, 3'-AGATG-5', 3919, 3'-GGTTG-5', 3945, 3'-GGATC-5', 4006, 3'-AGTTC-5', 4024, 3'-AGACC-5', 4030, 3'-AGTTG-5', 4096, 3'-AGTCC-5', 4126, 3'-GGATC-5', 4157, 3'-AGTTC-5', 4175, 3'-AGACA-5', 4181, 3'-AGACC-5', 4204, 3'-AGACG-5', 4235, 3'-GGATC-5', 4288, 3'-GGTCA-5', 4307, 3'-AGACC-5', 4365, 3'-AGTTC-5', 4417, 3'-GGACA-5', 4468, 3'-AGATC-5', 4475, 3'-AGTCC-5', 4500, 3'-AGACA-5', 4507,
- complement, positive strand, positive direction is SuccessablesDPEc++.bas, looking for 3'-C/T-C-A/T-A/G-T/C/G-5', 73, 3'-CCTGG-5' at 37, 3'-CCTAC-5' at 59, 3'-CCAGT-5' at 153, 3'-TCTAC-5' at 166, 3'-TCAGG-5' at 172, 3'-CCTGG-5' at 187, 3'-CCAGG-5' at 218, 3'-CCAAG-5' at 305, 3'-CCTGC-5' at 323, 3'-CCTGC-5' at 359, 3'-TCTGC-5' at 398, 3'-CCTGC-5' at 410, 3'-TCTGG-5' at 440, 3'-TCTGT-5' at 712, 3'-TCAGG-5' at 757, 3'-TCTAG-5' at 864, 3'-TCTAG-5' at 964, 3'-TCAGC-5' at 1528, 3'-CCTGC-5' at 1670, 3'-CCAGC-5' at 1687, 3'-CCTGT-5' at 1693, 3'-TCAGG-5' at 1826, 3'-TCAGG-5' at 1841, 3'-CCTGT-5' at 1869, 3'-CCTAC-5' at 1878, 3'-CCAAG-5' at 1926, 3'-TCAAG-5' at 1987, 3'-TCAGG-5' at 2026, 3'-CCAGT-5' at 2035, 3'-TCAGT-5' at 2100, 3'-TCAAT-5' at 2134, 3'-CCAGT-5' at 2220, 3'-TCTAG-5' at 2230, 3'-CCTAC-5' at 2409, 3'-CCTGT-5' at 2460, 3'-TCAGT-5' at 2607, 3'-TCAGT-5' at 2613, 3'-TCAGT-5' at 2618, 3'-CCTAT-5' at 2659, 3'-TCAAT-5' at 2666, 3'-CCTAC-5' at 2714, 3'-CCTAT-5' at 2737, 3'-TCTGG-5' at 2861, 3'-CCAAG-5' at 2922, 3'-TCAAG-5' at 2954, 3'-TCAGG-5' at 2998, 3'-CCAAT-5' at 3024, 3'-CCAAC-5' at 3050, 3'-TCAGG-5' at 3084, 3'-CCTGT-5' at 3131, 3'-CCTGG-5' at 3172, 3'-TCAGC-5' at 3283, 3'-TCAAT-5' at 3381, 3'-TCTAC-5' at 3418, 3'-CCTAC-5' at 3457, 3'-TCTAC-5' at 3475, 3'-CCAAC-5' at 3490, 3'-CCTGT-5' at 3530, 3'-CCTGG-5' at 3545, 3'-TCTGG-5' at 3550, 3'-CCTAC-5' at 3574, 3'-CCAGT-5' at 3820, 3'-TCAGG-5' at 3863, 3'-TCTGT-5' at 3893, 3'-CCAAG-5' at 4073, 3'-CCTAG-5' at 4080, 3'-CCTAC-5' at 4099, 3'-TCAAG-5' at 4200, 3'-CCTGT-5' at 4252, 3'-CCAGT-5' at 4269, 3'-TCTGC-5' at 4319, 3'-TCTGT-5' at 4332, 3'-CCAGG-5' at 4420.
- inverse complement, negative strand, negative direction is SuccessablesDPEci--.bas, looking for 3'-T/C/G-A/G-A/T-C-C/T-5', 174, 3'-TGTCT-5', 13, 3'-TGACT-5', 17, 3'-CAACT-5', 85, 3'-TATCT-5', 100, 3'-CATCC-5', 119, 3'-TGACT-5', 130, 3'-CGACT-5', 140, 3'-TGTCT-5', 168, 3'-GGTCC-5', 262, 3'-CATCT-5', 284, 3'-TGTCT-5', 289, 3'-TGACT-5', 307, 3'-GAACC-5', 328, 3'-TATCT-5', 355, 3'-TGTCC-5', 424, 3'-GGACC-5', 459, 3'-GGACC-5', 508, 3'-TGTCC-5', 561, 3'-CGTCC-5', 565, 3'-TAACT-5', 585, 3'-GGACC-5', 596, 3'-TAACC-5', 643, 3'-GGTCC-5', 648, 3'-CGTCC-5', 697, 3'-GGACT-5', 732, 3'-CGACC-5', 781, 3'-CGACT-5', 825, 3'-CGTCC-5', 831, 3'-GAACT-5', 843, 3'-GGTCC-5', 850, 3'-GGACC-5', 899, 3'-TGTCT-5', 907, 3'-GGTCC-5', 948, 3'-CATCT-5', 970, 3'-CGACT-5', 991, 3'-CGTCC-5', 997, 3'-GAACT-5', 1009, 3'-GGACC-5', 1015, 3'-CGTCT-5', 1023, 3'-TAACC-5', 1045, 3'-TGTCT-5', 1073, 3'-CGACC-5', 1111, 3'-GGACT-5', 1173, 3'-GGACC-5', 1198, 3'-CGACT-5', 1282, 3'-CGTCC-5', 1288, 3'-GAACT-5', 1300, 3'-GATCC-5', 1307, 3'-CGTCT-5', 1314, 3'-GGTCT-5', 1411, 3'-GGTCC-5', 1460, 3'-CGACC-5', 1464, 3'-GGTCT-5', 1518, 3'-TGTCT-5', 1567, 3'-CGTCT-5', 1614, 3'-GGACT-5', 1623, 3'-GAACC-5', 1649, 3'-CATCT-5', 1653, 3'-GGTCT-5', 1670, 3'-TATCT-5', 1710, 3'-CGACC-5', 1746, 3'-CGACC-5', 1756, 3'-CGACT-5', 1800, 3'-CGTCC-5', 1823, 3'-GGACC-5', 1841, 3'-CAACT-5', 1853, 3'-CGACC-5', 1891, 3'-GAACC-5', 1927, 3'-TGACT-5', 1935, 3'-CGTCC-5', 1941, 3'-GGACC-5', 1959, 3'-CGTCT-5', 1967, 3'-GGACC-5', 2009, 3'-TGTCT-5', 2017, 3'-CGACC-5', 2069, 3'-GGTCC-5', 2077, 3'-CGACT-5', 2109, 3'-TGTCT-5', 2119, 3'-GAACT-5', 2127, 3'-CGACT-5', 2226, 3'-CAACC-5', 2235, 3'-GGACC-5', 2268, 3'-CGACC-5', 2326, 3'-CGACT-5', 2361, 3'-CGTCC-5', 2367, 3'-GAACT-5', 2379, 3'-GGACC-5', 2385, 3'-CGTCC-5', 2389, 3'-GGACC-5', 2435, 3'-TGTCT-5', 2443, 3'-TGTCC-5', 2514, 3'-GGTCC-5', 2519, 3'-CGACT-5', 2562, 3'-CGTCC-5', 2568, 3'-GAACT-5', 2580, 3'-CAACT-5', 2593, 3'-TGTCC-5', 2689, 3'-CGACT-5', 2696, 3'-CAACT-5', 2705, 3'-GAACT-5', 2714, 3'-GGACC-5', 2720, 3'-CGACT-5', 2744, 3'-GGACC-5', 2770, 3'-TGTCT-5', 2778, 3'-TGTCT-5', 2878, 3'-TATCT-5', 2903, 3'-GAACC-5', 2921, 3'-CGACC-5', 3035, 3'-CGACC-5', 3041, 3'-CGACT-5', 3085, 3'-GAACT-5', 3103, 3'-CAACC-5', 3116, 3'-GGACC-5', 3128, 3'-CGACC-5', 3180, 3'-CGACT-5', 3224, 3'-GAACT-5', 3242, 3'-GGTCC-5', 3249, 3'-CATCT-5', 3256, 3'-GGACC-5', 3298, 3'-TAACT-5', 3358, 3'-GAACT-5', 3401, 3'-TATCT-5', 3422, 3'-CGTCT-5', 3431, 3'-TATCC-5', 3447, 3'-GATCT-5', 3463, 3'-GGTCT-5', 3486, 3'-CAACT-5', 3505, 3'-TAACC-5', 3529, 3'-CAACT-5', 3533, 3'-TGACT-5', 3542, 3'-GGTCC-5', 3564, 3'-GAACT-5', 3571, 3'-GGTCC-5', 3585, 3'-CGTCT-5', 3589, 3'-CAACC-5', 3606, 3'-CGACT-5', 3649, 3'-TGTCT-5', 3672, 3'-CGACC-5', 3719, 3'-GGACC-5', 3744, 3'-TGACC-5', 3749, 3'-GGACT-5', 3781, 3'-GAACC-5', 3793, 3'-CAACT-5', 3805, 3'-CATCT-5', 3820, 3'-CGACC-5', 3864, 3'-GGTCC-5', 3871, 3'-GGTCC-5', 3885, 3'-GGACC-5', 3906, 3'-TGTCT-5', 3917, 3'-GGACT-5', 3932, 3'-CAACC-5', 3942, 3'-CAACC-5', 3946, 3'-GGTCC-5', 3951, 3'-CGACT-5', 3994, 3'-GAACT-5', 4012, 3'-GGACC-5', 4037, 3'-TATCT-5', 4079, 3'-CAACC-5', 4097, 3'-GGTCC-5', 4102, 3'-CGACT-5', 4145, 3'-GGTCC-5', 4170, 3'-GAACC-5', 4188, 3'-GGTCT-5', 4233, 3'-GGTCC-5', 4253, 3'-GAACC-5', 4268, 3'-CGACT-5', 4276, 3'-CGTCC-5', 4282, 3'-GAACT-5', 4294, 3'-GGACC-5', 4300, 3'-GGACC-5', 4349, 3'-GGTCT-5', 4448, 3'-GGACC-5', 4494, 3'-TGTCT-5', 4518, 3'-GGACC-5', 4546,
- inverse complement, negative strand, positive direction is SuccessablesDPEci-+.bas, looking for 3'-T/C/G-A/G-A/T-C-C/T-5', 95, 3'-CATCC-5' at 30, 3'-GGACC-5' at 37, 3'-TGTCC-5' at 82, 3'-TGTCT-5' at 100, 3'-GGACC-5' at 187, 3'-GGTCC-5' at 218, 3'-TGTCT-5' at 268, 3'-CAACC-5' at 608, 3'-CATCC-5' at 629, 3'-CATCC-5' at 698, 3'-GGACT-5' at 746, 3'-GGACT-5' at 814, 3'-CAACC-5' at 844, 3'-GATCC-5' at 865, 3'-TGTCC-5' at 893, 3'-CGACT-5' at 898, 3'-GGACT-5' at 914, 3'-CAACC-5' at 944, 3'-GATCC-5' at 965, 3'-TGTCC-5' at 993, 3'-CGACT-5' at 998, 3'-CAACC-5' at 1280, 3'-CGTCT-5' at 1393, 3'-CGTCT-5' at 1493, 3'-CAACC-5' at 1616, 3'-TGACC-5' at 1662, 3'-GGTCT-5' at 1711, 3'-TGTCT-5' at 1731, 3'-GAACC-5' at 1811, 3'-TGTCT-5' at 1862, 3'-CGTCC-5' at 1930, 3'-GAACT-5' at 1951, 3'-GGTCT-5' at 1958, 3'-CAACC-5' at 2013, 3'-TGTCT-5' at 2078, 3'-CATCT-5' at 2111, 3'-CAACC-5' at 2120, 3'-TGTCT-5' at 2172, 3'-TGACC-5' at 2213, 3'-GAACC-5' at 2225, 3'-GGTCT-5' at 2258, 3'-GGACT-5' at 2271, 3'-CGACT-5' at 2359, 3'-GATCC-5' at 2378, 3'-TGTCT-5' at 2466, 3'-GGTCT-5' at 2489, 3'-GATCC-5' at 2514, 3'-GAACC-5' at 2579, 3'-GGACT-5' at 2672, 3'-GAACC-5' at 2776, 3'-GGACT-5' at 2820, 3'-CATCT-5' at 2852, 3'-TGACC-5' at 2873, 3'-GGTCT-5' at 2941, 3'-TGACT-5' at 2945, 3'-TGTCT-5' at 3004, 3'-GGTCT-5' at 3019, 3'-TGACT-5' at 3029, 3'-TGTCT-5' at 3053, 3'-CATCC-5' at 3108, 3'-GGACC-5' at 3172, 3'-CGTCC-5' at 3203, 3'-GGTCT-5' at 3245, 3'-CGTCT-5' at 3256, 3'-CAACT-5' at 3291, 3'-GGTCT-5' at 3299, 3'-CATCT-5' at 3329, 3'-TATCC-5' at 3384, 3'-TGTCT-5' at 3392, 3'-CATCT-5' at 3403, 3'-GGACC-5' at 3545, 3'-TGTCC-5' at 3577, 3'-GGTCT-5' at 3608, 3'-TGTCC-5' at 3619, 3'-CATCC-5' at 3629, 3'-TGACC-5' at 3714, 3'-TAACT-5' at 3733, 3'-GGTCT-5' at 3771, 3'-TGACC-5' at 3784, 3'-CGACT-5' at 3801, 3'-GAACC-5' at 3838, 3'-GAACC-5' at 3856, 3'-CAACC-5' at 3911, 3'-GAACC-5' at 3937, 3'-TGACC-5' at 4018, 3'-GAACT-5' at 4048, 3'-CGTCT-5' at 4056, 3'-GATCC-5' at 4081, 3'-CATCC-5' at 4183, 3'-TGACC-5' at 4216, 3'-CGACC-5' at 4358, 3'-TGTCC-5' at 4367, 3'-GGTCT-5' at 4380, 3'-GGTCT-5' at 4414, 3'-GGTCC-5' at 4420.
- inverse complement, positive strand, negative direction is SuccessablesDPEci+-.bas, looking for 3'-T/C/G-A/G-A/T-C-C/T-5', 58, 3'-GGACC-5', 32, 3'-TGTCT-5', 479, 3'-CATCC-5', 593, 3'-TAACC-5', 614, 3'-TGACC-5', 734, 3'-CGTCT-5', 754, 3'-GAACC-5', 846, 3'-TGTCT-5', 921, 3'-GATCC-5', 973, 3'-GAACC-5', 1012, 3'-TGACT-5', 1051, 3'-TGTCT-5', 1087, 3'-CGACC-5', 1191, 3'-TGTCT-5', 1222, 3'-GAACC-5', 1303, 3'-CAACC-5', 1407, 3'-GATCT-5', 1482, 3'-CAACC-5', 1514, 3'-TATCC-5', 1529, 3'-CATCC-5', 1572, 3'-GAACT-5', 1685, 3'-TATCT-5', 1731, 3'-CGTCT-5', 1774, 3'-GATCC-5', 1813, 3'-CATCC-5', 1838, 3'-CATCT-5', 1863, 3'-GAACC-5', 1956, 3'-TGTCT-5', 2031, 3'-TGTCT-5', 2165, 3'-TGACC-5', 2189, 3'-CATCT-5', 2290, 3'-GAACC-5', 2382, 3'-GAACC-5', 2717, 3'-TGACT-5', 2786, 3'-CAACC-5', 2844, 3'-CAACT-5', 2911, 3'-TGTCT-5', 2986, 3'-CATCT-5', 3154, 3'-GAACC-5', 3245, 3'-TGTCT-5', 3321, 3'-GAACT-5', 3460, 3'-CAACT-5', 3524, 3'-CATCT-5', 3551, 3'-GGACT-5', 3640, 3'-CGTCC-5', 3698, 3'-GGACT-5', 3747, 3'-GAACC-5', 3784, 3'-TGTCT-5', 3833, 3'-CAACT-5', 3849, 3'-GGACC-5', 3868, 3'-CATCC-5', 3903, 3'-CATCT-5', 4058, 3'-TGTCT-5', 4210, 3'-GGACT-5', 4327, 3'-TGTCT-5', 4371, 3'-GAACC-5', 4451, 3'-CATCC-5', 4456, 3'-GATCC-5', 4476,
- inverse complement, positive strand, positive direction is SuccessablesDPEci++.bas, looking for 3'-T/C/G-A/G-A/T-C-C/T-5', 152, 3'-GGTCC-5' at 8, 3'-GGTCT-5' at 15, 3'-TAACC-5' at 24, 3'-GGTCC-5' at 33, 3'-GGACC-5' at 40, 3'-TGTCC-5' at 157, 3'-CGTCC-5' at 194, 3'-GGTCT-5' at 204, 3'-GGTCC-5' at 215, 3'-CGACC-5' at 277, 3'-GGACC-5' at 286, 3'-CGTCC-5' at 318, 3'-TGACC-5' at 347, 3'-TGTCC-5' at 365, 3'-CGTCC-5' at 379, 3'-CGACC-5' at 386, 3'-CGTCT-5' at 396, 3'-CGACC-5' at 417, 3'-GGTCC-5' at 424, 3'-CGTCT-5' at 438, 3'-GGTCT-5' at 468, 3'-GGTCC-5' at 515, 3'-TGTCC-5' at 552, 3'-GGACC-5' at 598, 3'-CGTCC-5' at 658, 3'-GGTCC-5' at 707, 3'-GGACT-5' at 725, 3'-CGACC-5' at 779, 3'-GGTCT-5' at 835, 3'-GGACC-5' at 847, 3'-GGACT-5' at 859, 3'-GGTCT-5' at 935, 3'-GGACC-5' at 947, 3'-GGACT-5' at 959, 3'-TGACC-5' at 1140, 3'-GGTCC-5' at 1175, 3'-GGACC-5' at 1199, 3'-TGACT-5' at 1286, 3'-CGTCT-5' at 1316, 3'-CGTCT-5' at 1416, 3'-GGTCT-5' at 1631, 3'-GGACT-5' at 1660, 3'-GGACT-5' at 1676, 3'-CGACC-5' at 1736, 3'-GGTCT-5' at 1742, 3'-CGACC-5' at 1779, 3'-CGTCC-5' at 1788, 3'-GAACC-5' at 1799, 3'-GGACC-5' at 1815, 3'-GGTCC-5' at 1855, 3'-CATCC-5' at 1875, 3'-GGTCC-5' at 1893, 3'-CGTCC-5' at 1905, 3'-CGTCT-5' at 1937, 3'-TGACC-5' at 1953, 3'-TGTCC-5' at 1966, 3'-TGTCC-5' at 2125, 3'-CAACC-5' at 2185, 3'-GGACT-5' at 2211, 3'-GGTCT-5' at 2228, 3'-CATCC-5' at 2255, 3'-CGTCC-5' at 2296, 3'-GGTCC-5' at 2316, 3'-CGACC-5' at 2320, 3'-CGACC-5' at 2405, 3'-TGTCT-5' at 2414, 3'-GGACC-5' at 2433, 3'-GATCC-5' at 2482, 3'-GGACC-5' at 2501, 3'-CAACC-5' at 2541, 3'-TATCC-5' at 2550, 3'-GGACC-5' at 2569, 3'-GGTCC-5' at 2574, 3'-TATCT-5' at 2627, 3'-GATCC-5' at 2639, 3'-TGTCT-5' at 2652, 3'-TGACT-5' at 2674, 3'-CGTCC-5' at 2683, 3'-CGTCT-5' at 2721, 3'-CGACC-5' at 2734, 3'-CGTCC-5' at 2745, 3'-CGACC-5' at 2770, 3'-GGTCC-5' at 2780, 3'-CGACC-5' at 2810, 3'-CAACC-5' at 2816, 3'-TGTCT-5' at 2837, 3'-CGTCT-5' at 2859, 3'-GGTCC-5' at 2876, 3'-GGACC-5' at 2891, 3'-CGACT-5' at 2915, 3'-GGACT-5' at 2968, 3'-GGACC-5' at 2988, 3'-GGTCC-5' at 3016, 3'-GGACC-5' at 3047, 3'-GGTCT-5' at 3091, 3'-GGTCC-5' at 3111, 3'-TGACC-5' at 3117, 3'-CGTCC-5' at 3128, 3'-TGTCT-5' at 3133, 3'-CGTCC-5' at 3147, 3'-TGTCT-5' at 3179, 3'-CGTCT-5' at 3214, 3'-GGTCT-5' at 3221, 3'-CGACC-5' at 3242, 3'-GGACC-5' at 3296, 3'-TGACC-5' at 3345, 3'-GGACC-5' at 3362, 3'-CATCT-5' at 3416, 3'-CGTCC-5' at 3466, 3'-CGTCT-5' at 3473, 3'-GATCC-5' at 3484, 3'-GGACC-5' at 3496, 3'-GATCC-5' at 3522, 3'-CGACC-5' at 3526, 3'-GGTCC-5' at 3536, 3'-GGTCT-5' at 3548, 3'-TGTCC-5' at 3571, 3'-CGACT-5' at 3588, 3'-TGTCC-5' at 3636, 3'-CGTCC-5' at 3662, 3'-GGACC-5' at 3679, 3'-GGTCC-5' at 3687, 3'-CGTCC-5' at 3694, 3'-TGACT-5' at 3735, 3'-CATCC-5' at 3753, 3'-GGACC-5' at 3758, 3'-CGTCC-5' at 3768, 3'-CGACT-5' at 3778, 3'-GGACC-5' at 3787, 3'-GGTCT-5' at 3806, 3'-CGTCT-5' at 3831, 3'-GGTCT-5' at 3891, 3'-CGTCT-5' at 3916, 3'-TGTCC-5' at 3975, 3'-CGACC-5' at 3989, 3'-GAACT-5' at 4016, 3'-GGTCC-5' at 4032, 3'-CATCT-5' at 4036, 3'-GATCT-5' at 4065, 3'-TGTCC-5' at 4070, 3'-GATCC-5' at 4077, 3'-TGACT-5' at 4089, 3'-GAACT-5' at 4131, 3'-TAACT-5' at 4161, 3'-CGACC-5' at 4177, 3'-GGACT-5' at 4186, 3'-GGACT-5' at 4214, 3'-GAACC-5' at 4300, 3'-CGTCT-5' at 4317, 3'-GGTCT-5' at 4330, 3'-GGACC-5' at 4409, 3'-GGACC-5' at 4424.
- inverse, negative strand, negative direction, is SuccessablesDPEi--.bas, looking for 3'-A/C/G-C/T-A/T-G-A/G-5', 58, 3'-CCTGG-5', 32, 3'-ACAGA-5', 479, 3'-GTAGG-5', 593, 3'-ATTGG-5', 614, 3'-ACTGG-5', 734, 3'-GCAGA-5', 754, 3'-CTTGG-5', 846, 3'-ACAGA-5', 921, 3'-CTAGG-5', 973, 3'-CTTGG-5', 1012, 3'-ACTGA-5', 1051, 3'-ACAGA-5', 1087, 3'-GCTGG-5', 1191, 3'-ACAGA-5', 1222, 3'-CTTGG-5', 1303, 3'-GTTGG-5', 1407, 3'-CTAGA-5', 1482, 3'-GTTGG-5', 1514, 3'-ATAGG-5', 1529, 3'-GTAGG-5', 1572, 3'-CTTGA-5', 1685, 3'-ATAGA-5', 1731, 3'-GCAGA-5', 1774, 3'-CTAGG-5', 1813, 3'-GTAGG-5', 1838, 3'-GTAGA-5', 1863, 3'-CTTGG-5', 1956, 3'-ACAGA-5', 2031, 3'-ACAGA-5', 2165, 3'-ACTGG-5', 2189, 3'-GTAGA-5', 2290, 3'-CTTGG-5', 2382, 3'-CTTGG-5', 2717, 3'-ACTGA-5', 2786, 3'-GTTGG-5', 2844, 3'-GTTGA-5', 2911, 3'-ACAGA-5', 2986, 3'-GTAGA-5', 3154, 3'-CTTGG-5', 3245, 3'-ACAGA-5', 3321, 3'-CTTGA-5', 3460, 3'-GTTGA-5', 3524, 3'-GTAGA-5', 3551, 3'-CCTGA-5', 3640, 3'-GCAGG-5', 3698, 3'-CCTGA-5', 3747, 3'-CTTGG-5', 3784, 3'-ACAGA-5', 3833, 3'-GTTGA-5', 3849, 3'-CCTGG-5', 3868, 3'-GTAGG-5', 3903, 3'-GTAGA-5', 4058, 3'-ACAGA-5', 4210, 3'-CCTGA-5', 4327, 3'-ACAGA-5', 4371, 3'-CTTGG-5', 4451, 3'-GTAGG-5', 4456, 3'-CTAGG-5', 4476,
- inverse, negative strand, positive direction, is SuccessablesDPEi-+.bas, looking for 3'-A/C/G-C/T-A/T-G-A/G-5', 152 , 3'-CCAGG-5' at 8 , 3'-CCAGA-5' at 15 , 3'-ATTGG-5' at 24 , 3'-CCAGG-5' at 33 , 3'-CCTGG-5' at 40 , 3'-ACAGG-5' at 157 , 3'-GCAGG-5' at 194 , 3'-CCAGA-5' at 204 , 3'-CCAGG-5' at 215 , 3'-GCTGG-5' at 277 , 3'-CCTGG-5' at 286 , 3'-GCAGG-5' at 318 , 3'-ACTGG-5' at 347 , 3'-ACAGG-5' at 365 , 3'-GCAGG-5' at 379 , 3'-GCTGG-5' at 386 , 3'-GCAGA-5' at 396 , 3'-GCTGG-5' at 417 , 3'-CCAGG-5' at 424 , 3'-GCAGA-5' at 438 , 3'-CCAGA-5' at 468 , 3'-CCAGG-5' at 515 , 3'-ACAGG-5' at 552 , 3'-CCTGG-5' at 598 , 3'-GCAGG-5' at 658 , 3'-CCAGG-5' at 707 , 3'-CCTGA-5' at 725 , 3'-GCTGG-5' at 779 , 3'-CCAGA-5' at 835 , 3'-CCTGG-5' at 847 , 3'-CCTGA-5' at 859 , 3'-CCAGA-5' at 935 , 3'-CCTGG-5' at 947 , 3'-CCTGA-5' at 959 , 3'-ACTGG-5' at 1140 , 3'-CCAGG-5' at 1175 , 3'-CCTGG-5' at 1199 , 3'-ACTGA-5' at 1286 , 3'-GCAGA-5' at 1316 , 3'-GCAGA-5' at 1416 , 3'-CCAGA-5' at 1631 , 3'-CCTGA-5' at 1660 , 3'-CCTGA-5' at 1676 , 3'-GCTGG-5' at 1736 , 3'-CCAGA-5' at 1742 , 3'-GCTGG-5' at 1779 , 3'-GCAGG-5' at 1788 , 3'-CTTGG-5' at 1799 , 3'-CCTGG-5' at 1815 , 3'-CCAGG-5' at 1855 , 3'-GTAGG-5' at 1875 , 3'-CCAGG-5' at 1893 , 3'-GCAGG-5' at 1905 , 3'-GCAGA-5' at 1937 , 3'-ACTGG-5' at 1953 , 3'-ACAGG-5' at 1966 , 3'-ACAGG-5' at 2125 , 3'-GTTGG-5' at 2185 , 3'-CCTGA-5' at 2211 , 3'-CCAGA-5' at 2228 , 3'-GTAGG-5' at 2255 , 3'-GCAGG-5' at 2296 , 3'-CCAGG-5' at 2316 , 3'-GCTGG-5' at 2320 , 3'-GCTGG-5' at 2405 , 3'-ACAGA-5' at 2414 , 3'-CCTGG-5' at 2433 , 3'-CTAGG-5' at 2482 , 3'-CCTGG-5' at 2501 , 3'-GTTGG-5' at 2541 , 3'-ATAGG-5' at 2550 , 3'-CCTGG-5' at 2569 , 3'-CCAGG-5' at 2574 , 3'-ATAGA-5' at 2627 , 3'-CTAGG-5' at 2639 , 3'-ACAGA-5' at 2652 , 3'-ACTGA-5' at 2674 , 3'-GCAGG-5' at 2683 , 3'-GCAGA-5' at 2721 , 3'-GCTGG-5' at 2734 , 3'-GCAGG-5' at 2745 , 3'-GCTGG-5' at 2770 , 3'-CCAGG-5' at 2780 , 3'-GCTGG-5' at 2810 , 3'-GTTGG-5' at 2816 , 3'-ACAGA-5' at 2837 , 3'-GCAGA-5' at 2859 , 3'-CCAGG-5' at 2876 , 3'-CCTGG-5' at 2891 , 3'-GCTGA-5' at 2915 , 3'-CCTGA-5' at 2968 , 3'-CCTGG-5' at 2988 , 3'-CCAGG-5' at 3016 , 3'-CCTGG-5' at 3047 , 3'-CCAGA-5' at 3091 , 3'-CCAGG-5' at 3111 , 3'-ACTGG-5' at 3117 , 3'-GCAGG-5' at 3128 , 3'-ACAGA-5' at 3133 , 3'-GCAGG-5' at 3147 , 3'-ACAGA-5' at 3179 , 3'-GCAGA-5' at 3214 , 3'-CCAGA-5' at 3221 , 3'-GCTGG-5' at 3242 , 3'-CCTGG-5' at 3296 , 3'-ACTGG-5' at 3345 , 3'-CCTGG-5' at 3362 , 3'-GTAGA-5' at 3416 , 3'-GCAGG-5' at 3466 , 3'-GCAGA-5' at 3473 , 3'-CTAGG-5' at 3484 , 3'-CCTGG-5' at 3496 , 3'-CTAGG-5' at 3522 , 3'-GCTGG-5' at 3526 , 3'-CCAGG-5' at 3536 , 3'-CCAGA-5' at 3548 , 3'-ACAGG-5' at 3571 , 3'-GCTGA-5' at 3588 , 3'-ACAGG-5' at 3636 , 3'-GCAGG-5' at 3662 , 3'-CCTGG-5' at 3679 , 3'-CCAGG-5' at 3687 , 3'-GCAGG-5' at 3694 , 3'-ACTGA-5' at 3735 , 3'-GTAGG-5' at 3753 , 3'-CCTGG-5' at 3758 , 3'-GCAGG-5' at 3768 , 3'-GCTGA-5' at 3778 , 3'-CCTGG-5' at 3787 , 3'-CCAGA-5' at 3806 , 3'-GCAGA-5' at 3831 , 3'-CCAGA-5' at 3891 , 3'-GCAGA-5' at 3916 , 3'-ACAGG-5' at 3975 , 3'-GCTGG-5' at 3989 , 3'-CTTGA-5' at 4016 , 3'-CCAGG-5' at 4032 , 3'-GTAGA-5' at 4036 , 3'-CTAGA-5' at 4065 , 3'-ACAGG-5' at 4070 , 3'-CTAGG-5' at 4077 , 3'-ACTGA-5' at 4089 , 3'-CTTGA-5' at 4131 , 3'-ATTGA-5' at 4161 , 3'-GCTGG-5' at 4177 , 3'-CCTGA-5' at 4186 , 3'-CCTGA-5' at 4214 , 3'-CTTGG-5' at 4300 , 3'-GCAGA-5' at 4317 , 3'-CCAGA-5' at 4330 , 3'-CCTGG-5' at 4409 , 3'-CCTGG-5' at 4424.
- inverse, positive strand, negative direction, is SuccessablesDPEi+-.bas, looking for 3'-A/C/G-C/T-A/T-G-A/G-5', 174, 3'-ACAGA-5', 13, 3'-ACTGA-5', 17, 3'-GTTGA-5', 85, 3'-ATAGA-5', 100, 3'-GTAGG-5', 119, 3'-ACTGA-5', 130, 3'-GCTGA-5', 140, 3'-ACAGA-5', 168, 3'-CCAGG-5', 262, 3'-GTAGA-5', 284, 3'-ACAGA-5', 289, 3'-ACTGA-5', 307, 3'-CTTGG-5', 328, 3'-ATAGA-5', 355, 3'-ACAGG-5', 424, 3'-CCTGG-5', 459, 3'-CCTGG-5', 508, 3'-ACAGG-5', 561, 3'-GCAGG-5', 565, 3'-ATTGA-5', 585, 3'-CCTGG-5', 596, 3'-ATTGG-5', 643, 3'-CCAGG-5', 648, 3'-GCAGG-5', 697, 3'-CCTGA-5', 732, 3'-GCTGG-5', 781, 3'-GCTGA-5', 825, 3'-GCAGG-5', 831, 3'-CTTGA-5', 843, 3'-CCAGG-5', 850, 3'-CCTGG-5', 899, 3'-ACAGA-5', 907, 3'-CCAGG-5', 948, 3'-GTAGA-5', 970, 3'-GCTGA-5', 991, 3'-GCAGG-5', 997, 3'-CTTGA-5', 1009, 3'-CCTGG-5', 1015, 3'-GCAGA-5', 1023, 3'-ATTGG-5', 1045, 3'-ACAGA-5', 1073, 3'-GCTGG-5', 1111, 3'-CCTGA-5', 1173, 3'-CCTGG-5', 1198, 3'-GCTGA-5', 1282, 3'-GCAGG-5', 1288, 3'-CTTGA-5', 1300, 3'-CTAGG-5', 1307, 3'-GCAGA-5', 1314, 3'-CCAGA-5', 1411, 3'-CCAGG-5', 1460, 3'-GCTGG-5', 1464, 3'-CCAGA-5', 1518, 3'-ACAGA-5', 1567, 3'-GCAGA-5', 1614, 3'-CCTGA-5', 1623, 3'-CTTGG-5', 1649, 3'-GTAGA-5', 1653, 3'-CCAGA-5', 1670, 3'-ATAGA-5', 1710, 3'-GCTGG-5', 1746, 3'-GCTGG-5', 1756, 3'-GCTGA-5', 1800, 3'-GCAGG-5', 1823, 3'-CCTGG-5', 1841, 3'-GTTGA-5', 1853, 3'-GCTGG-5', 1891, 3'-CTTGG-5', 1927, 3'-ACTGA-5', 1935, 3'-GCAGG-5', 1941, 3'-CCTGG-5', 1959, 3'-GCAGA-5', 1967, 3'-CCTGG-5', 2009, 3'-ACAGA-5', 2017, 3'-GCTGG-5', 2069, 3'-CCAGG-5', 2077, 3'-GCTGA-5', 2109, 3'-ACAGA-5', 2119, 3'-CTTGA-5', 2127, 3'-GCTGA-5', 2226, 3'-GTTGG-5', 2235, 3'-CCTGG-5', 2268, 3'-GCTGG-5', 2326, 3'-GCTGA-5', 2361, 3'-GCAGG-5', 2367, 3'-CTTGA-5', 2379, 3'-CCTGG-5', 2385, 3'-GCAGG-5', 2389, 3'-CCTGG-5', 2435, 3'-ACAGA-5', 2443, 3'-ACAGG-5', 2514, 3'-CCAGG-5', 2519, 3'-GCTGA-5', 2562, 3'-GCAGG-5', 2568, 3'-CTTGA-5', 2580, 3'-GTTGA-5', 2593, 3'-ACAGG-5', 2689, 3'-GCTGA-5', 2696, 3'-GTTGA-5', 2705, 3'-CTTGA-5', 2714, 3'-CCTGG-5', 2720, 3'-GCTGA-5', 2744, 3'-CCTGG-5', 2770, 3'-ACAGA-5', 2778, 3'-ACAGA-5', 2878, 3'-ATAGA-5', 2903, 3'-CTTGG-5', 2921, 3'-GCTGG-5', 3035, 3'-GCTGG-5', 3041, 3'-GCTGA-5', 3085, 3'-CTTGA-5', 3103, 3'-GTTGG-5', 3116, 3'-CCTGG-5', 3128, 3'-GCTGG-5', 3180, 3'-GCTGA-5', 3224, 3'-CTTGA-5', 3242, 3'-CCAGG-5', 3249, 3'-GTAGA-5', 3256, 3'-CCTGG-5', 3298, 3'-ATTGA-5', 3358, 3'-CTTGA-5', 3401, 3'-ATAGA-5', 3422, 3'-GCAGA-5', 3431, 3'-ATAGG-5', 3447, 3'-CTAGA-5', 3463, 3'-CCAGA-5', 3486, 3'-GTTGA-5', 3505, 3'-ATTGG-5', 3529, 3'-GTTGA-5', 3533, 3'-ACTGA-5', 3542, 3'-CCAGG-5', 3564, 3'-CTTGA-5', 3571, 3'-CCAGG-5', 3585, 3'-GCAGA-5', 3589, 3'-GTTGG-5', 3606, 3'-GCTGA-5', 3649, 3'-ACAGA-5', 3672, 3'-GCTGG-5', 3719, 3'-CCTGG-5', 3744, 3'-ACTGG-5', 3749, 3'-CCTGA-5', 3781, 3'-CTTGG-5', 3793, 3'-GTTGA-5', 3805, 3'-GTAGA-5', 3820, 3'-GCTGG-5', 3864, 3'-CCAGG-5', 3871, 3'-CCAGG-5', 3885, 3'-CCTGG-5', 3906, 3'-ACAGA-5', 3917, 3'-CCTGA-5', 3932, 3'-GTTGG-5', 3942, 3'-GTTGG-5', 3946, 3'-CCAGG-5', 3951, 3'-GCTGA-5', 3994, 3'-CTTGA-5', 4012, 3'-CCTGG-5', 4037, 3'-ATAGA-5', 4079, 3'-GTTGG-5', 4097, 3'-CCAGG-5', 4102, 3'-GCTGA-5', 4145, 3'-CCAGG-5', 4170, 3'-CTTGG-5', 4188, 3'-CCAGA-5', 4233, 3'-CCAGG-5', 4253, 3'-CTTGG-5', 4268, 3'-GCTGA-5', 4276, 3'-GCAGG-5', 4282, 3'-CTTGA-5', 4294, 3'-CCTGG-5', 4300, 3'-CCTGG-5', 4349, 3'-CCAGA-5', 4448, 3'-CCTGG-5', 4494, 3'-ACAGA-5', 4518, 3'-CCTGG-5', 4546,
- inverse, positive strand, positive direction, is SuccessablesDPEi++.bas, looking for 3'-A/C/G-C/T-A/T-G-A/G-5', 95, 3'-GTAGG-5' at 30, 3'-CCTGG-5' at 37, 3'-ACAGG-5' at 82, 3'-ACAGA-5' at 100, 3'-CCTGG-5' at 187, 3'-CCAGG-5' at 218, 3'-ACAGA-5' at 268, 3'-GTTGG-5' at 608, 3'-GTAGG-5' at 629, 3'-GTAGG-5' at 698, 3'-CCTGA-5' at 746, 3'-CCTGA-5' at 814, 3'-GTTGG-5' at 844, 3'-CTAGG-5' at 865, 3'-ACAGG-5' at 893, 3'-GCTGA-5' at 898, 3'-CCTGA-5' at 914, 3'-GTTGG-5' at 944, 3'-CTAGG-5' at 965, 3'-ACAGG-5' at 993, 3'-GCTGA-5' at 998, 3'-GTTGG-5' at 1280, 3'-GCAGA-5' at 1393, 3'-GCAGA-5' at 1493, 3'-GTTGG-5' at 1616, 3'-ACTGG-5' at 1662, 3'-CCAGA-5' at 1711, 3'-ACAGA-5' at 1731, 3'-CTTGG-5' at 1811, 3'-ACAGA-5' at 1862, 3'-GCAGG-5' at 1930, 3'-CTTGA-5' at 1951, 3'-CCAGA-5' at 1958, 3'-GTTGG-5' at 2013, 3'-ACAGA-5' at 2078, 3'-GTAGA-5' at 2111, 3'-GTTGG-5' at 2120, 3'-ACAGA-5' at 2172, 3'-ACTGG-5' at 2213, 3'-CTTGG-5' at 2225, 3'-CCAGA-5' at 2258, 3'-CCTGA-5' at 2271, 3'-GCTGA-5' at 2359, 3'-CTAGG-5' at 2378, 3'-ACAGA-5' at 2466, 3'-CCAGA-5' at 2489, 3'-CTAGG-5' at 2514, 3'-CTTGG-5' at 2579, 3'-CCTGA-5' at 2672, 3'-CTTGG-5' at 2776, 3'-CCTGA-5' at 2820, 3'-GTAGA-5' at 2852, 3'-ACTGG-5' at 2873, 3'-CCAGA-5' at 2941, 3'-ACTGA-5' at 2945, 3'-ACAGA-5' at 3004, 3'-CCAGA-5' at 3019, 3'-ACTGA-5' at 3029, 3'-ACAGA-5' at 3053, 3'-GTAGG-5' at 3108, 3'-CCTGG-5' at 3172, 3'-GCAGG-5' at 3203, 3'-CCAGA-5' at 3245, 3'-GCAGA-5' at 3256, 3'-GTTGA-5' at 3291, 3'-CCAGA-5' at 3299, 3'-GTAGA-5' at 3329, 3'-ATAGG-5' at 3384, 3'-ACAGA-5' at 3392, 3'-GTAGA-5' at 3403, 3'-CCTGG-5' at 3545, 3'-ACAGG-5' at 3577, 3'-CCAGA-5' at 3608, 3'-ACAGG-5' at 3619, 3'-GTAGG-5' at 3629, 3'-ACTGG-5' at 3714, 3'-ATTGA-5' at 3733, 3'-CCAGA-5' at 3771, 3'-ACTGG-5' at 3784, 3'-GCTGA-5' at 3801, 3'-CTTGG-5' at 3838, 3'-CTTGG-5' at 3856, 3'-GTTGG-5' at 3911, 3'-CTTGG-5' at 3937, 3'-ACTGG-5' at 4018, 3'-CTTGA-5' at 4048, 3'-GCAGA-5' at 4056, 3'-CTAGG-5' at 4081, 3'-GTAGG-5' at 4183, 3'-ACTGG-5' at 4216, 3'-GCTGG-5' at 4358, 3'-ACAGG-5' at 4367, 3'-CCAGA-5' at 4380, 3'-CCAGA-5' at 4414, 3'-CCAGG-5' at 4420.
Acknowledgements
The content on this page was first contributed by: Henry A. Hoff.
Initial content for this page in some instances came from Wikiversity.
See also
References
- ↑ 1.0 1.1 Jennifer E.F. Butler, James T. Kadonaga (October 15, 2002). "The RNA polymerase II core promoter: a key component in the regulation of gene expression". Genes & Development. 16 (20): 2583–92. doi:10.1101/gad.1026202. PMID 12381658.
- ↑ 2.0 2.1 2.2 Tamar Juven-Gershon, James T. Kadonaga (March 15, 2010). "Regulation of Gene Expression via the Core Promoter and the Basal Transcriptional Machinery". Developmental Biology. 339 (2): 225–9. doi:10.1016/j.ydbio.2009.08.009. PMC 2830304. PMID 19682982.
- ↑ 3.0 3.1 3.2 "Downstream promoter element". San Francisco, California: Wikimedia Foundation, Inc. May 6, 2012. Retrieved 2012-05-20.
- ↑ 4.0 4.1 4.2 4.3 4.4 4.5 4.6 Thomas W. Burke and James T. Kadonaga (November 15, 1997). "The downstream core promoter element, DPE, is conserved from Drosophila to humans and is recognized by TAFII60 of Drosophila". Genes & Development. 11 (22): 3020–31. doi:10.1101/gad.11.22.3020. PMC 316699. PMID 9367984.
- ↑ 5.0 5.1 Stephen T. Smale and James T. Kadonaga (July 2003). "The RNA Polymerase II Core Promoter" (PDF). Annual Review of Biochemistry. 72 (1): 449–79. doi:10.1146/annurev.biochem.72.121801.161520. PMID 12651739. Retrieved 2012-05-07.
- ↑ 6.0 6.1 T.W. Burke and James T. Kadonaga (15 March 1996). "Drosophila TFIID binds to a conserved downstream basal promoter element that is present in many TATA-box-deficient promoters" (PDF). Genes & Development. 10 (6): 711–724. doi:10.1101/gad.10.6.711. PMID 8598298.
- ↑ Kutach, Alan K.; Kadonaga, James T. (July 2000). "The Downstream Promoter Element DPE Appears To Be as Widely Used as the TATA Box in Drosophila Core Promoters". Molecular and Cellular Biology. 20 (13): 4754–4764. doi:10.1128/MCB.20.13.4754-4764.2000. PMC 85905. PMID 10848601.
- ↑ "Downstream promoter element". San Francisco, California: Wikimedia Foundation, Inc. November 8, 2012. Retrieved 2013-01-23.
- ↑ James T. Kadonaga (September 2002). "The DPE, a core promoter element for transcription by RNA polymerase II" (PDF). Experimental & Molecular Medicine. 34 (4): 259–264. PMID 12515390.
- ↑ Takuya Matsumoto, Saemi Kitajima, Chisato Yamamoto, Mitsuru Aoyagi, Yoshiharu Mitoma, Hiroyuki Harada and Yuji Nagashima (9 August 2020). "Cloning and tissue distribution of the ATP-binding cassette subfamily G member 2 gene in the marine pufferfish Takifugu rubripes" (PDF). Fisheries Science. 86: 873–887. doi:10.1007/s12562-020-01451-z. Retrieved 27 September 2020.
- ↑ FlyBase (February 3, 2013). "Antp Antennapedia [ Drosophila melanogaster ]". 8600 Rockville Pike, Bethesda MD, 20894 USA: National Center for Biotechnology Information, U.S. National Library of Medicine. Retrieved 2013-02-07.
- ↑ 12.0 12.1 HGNC (February 5, 2013). "HOXA7 homeobox A7 [ Homo sapiens ]". 8600 Rockville Pike, Bethesda MD, 20894 USA: National Center for Biotechnology Information, U.S. National Library of Medicine. Retrieved 2013-02-07.
- ↑ HGNC (February 5, 2013). "HOXA9 homeobox A9 [ Homo sapiens ]". 8600 Rockville Pike, Bethesda MD, 20894 USA: National Center for Biotechnology Information, U.S. National Library of Medicine. Retrieved 2013-02-07.
Further reading
- Jennifer E.F. Butler, James T. Kadonaga (October 15, 2002). "The RNA polymerase II core promoter: a key component in the regulation of gene expression". Genes & Development. 16 (20): 2583–92. doi:10.1101/gad.1026202. PMID 12381658.
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