Defense and stress-responsive element gene transcriptions: Difference between revisions
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Created page with "{{AE}} Henry A. Hoff ==Human genes== ==Consensus sequences== Defense and stress-responsive elements (ATTTTCTTCA).<ref name=Sharma>{{ cite journal |author=Bhaskar Sharma & J..." |
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==Samplings== | ==Samplings== | ||
{{main|Model samplings}} | |||
Copying the consensus of the DRE: 5'-ATTTTCTTCA-3' and putting the sequence in "⌘F" finds no locations for this sequence in any A1BG direction as can be found by the computer programs. | |||
For the Basic programs testing consensus sequence 5'-AAAAAAAA-3' (starting with SuccessablesAAA.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found: | |||
# negative strand, negative direction, looking for 5'-AAAAAAAA-3', 0. | |||
# negative strand, positive direction, looking for 5'-AAAAAAAA-3', 0. | |||
# positive strand, negative direction, looking for 5'-AAAAAAAA-3', 0. | |||
# positive strand, positive direction, looking for 5'-AAAAAAAA-3', 0. | |||
# complement, negative strand, negative direction, looking for 5'-TTTTTTTT-3', 0. | |||
# complement, negative strand, positive direction, looking for 5'-TTTTTTTT-3', 0. | |||
# complement, positive strand, negative direction, looking for 5'-TTTTTTTT-3', 0. | |||
# complement, positive strand, positive direction, looking for 5'-TTTTTTTT-3', 0. | |||
# inverse complement, negative strand, negative direction, looking for 5'-TTTTTTTT-3', 0. | |||
# inverse complement, negative strand, positive direction, looking for 5'-TTTTTTTT-3', 0. | |||
# inverse complement, positive strand, negative direction, looking for 5'-TTTTTTTT-3', 0. | |||
# inverse complement, positive strand, positive direction, looking for 5'-TTTTTTTT-3', 0. | |||
# inverse negative strand, negative direction, looking for 5'-AAAAAAAA-3', 0. | |||
# inverse negative strand, positive direction, looking for 5'-AAAAAAAA-3', 0. | |||
# inverse positive strand, negative direction, looking for 5'-AAAAAAAA-3', 0. | |||
# inverse positive strand, positive direction, looking for 5'-AAAAAAAA-3', 0. | |||
==See also== | ==See also== |
Revision as of 01:41, 13 December 2020
Associate Editor(s)-in-Chief: Henry A. Hoff
Human genes
Consensus sequences
Defense and stress-responsive elements (ATTTTCTTCA).[1]
Samplings
Copying the consensus of the DRE: 5'-ATTTTCTTCA-3' and putting the sequence in "⌘F" finds no locations for this sequence in any A1BG direction as can be found by the computer programs.
For the Basic programs testing consensus sequence 5'-AAAAAAAA-3' (starting with SuccessablesAAA.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:
- negative strand, negative direction, looking for 5'-AAAAAAAA-3', 0.
- negative strand, positive direction, looking for 5'-AAAAAAAA-3', 0.
- positive strand, negative direction, looking for 5'-AAAAAAAA-3', 0.
- positive strand, positive direction, looking for 5'-AAAAAAAA-3', 0.
- complement, negative strand, negative direction, looking for 5'-TTTTTTTT-3', 0.
- complement, negative strand, positive direction, looking for 5'-TTTTTTTT-3', 0.
- complement, positive strand, negative direction, looking for 5'-TTTTTTTT-3', 0.
- complement, positive strand, positive direction, looking for 5'-TTTTTTTT-3', 0.
- inverse complement, negative strand, negative direction, looking for 5'-TTTTTTTT-3', 0.
- inverse complement, negative strand, positive direction, looking for 5'-TTTTTTTT-3', 0.
- inverse complement, positive strand, negative direction, looking for 5'-TTTTTTTT-3', 0.
- inverse complement, positive strand, positive direction, looking for 5'-TTTTTTTT-3', 0.
- inverse negative strand, negative direction, looking for 5'-AAAAAAAA-3', 0.
- inverse negative strand, positive direction, looking for 5'-AAAAAAAA-3', 0.
- inverse positive strand, negative direction, looking for 5'-AAAAAAAA-3', 0.
- inverse positive strand, positive direction, looking for 5'-AAAAAAAA-3', 0.
See also
References
- ↑ Bhaskar Sharma & Joemar Taganna (12 June 2020). "Genome-wide analysis of the U-box E3 ubiquitin ligase enzyme gene family in tomato". Scientific Reports. 10 (9581). doi:10.1038/s41598-020-66553-1. PMID 32533036 Check
|pmid=
value (help). Retrieved 27 August 2020.