G box gene transcriptions: Difference between revisions
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"A G-box-related motif, containing the core sequence CACGTG is also present in the 5' regions of two other classes of light-responsive genes".<ref name=Oeda/> | "A G-box-related motif, containing the core sequence CACGTG is also present in the 5' regions of two other classes of light-responsive genes".<ref name=Oeda/> | ||
"Two distinct sequence elements, the H-box (consensus CCTACC(N)<sub>7</sub>CT) and the G-box (CACGTG), are required for stimulation of the ''chsl5'' promoter by [p-coumaric acid] 4-CA."<ref name=Loake>{{ cite journal | |||
|author=Gary J. Loake, Ouriel Faktor, Christopher J. Lamb, and Richard A. Dixon | |||
|title=Combination of H-box [CCTACC(N)<sub>7</sub>CT] and G-box (CACGTG) cis elements is necessary for feed-forward stimulation of a chalcone synthase promoter by the phenylpropanoid-pathway intermediate ''p''-coumaricacid | |||
|journal=Proceedings of the National Academy of Sciences USA | |||
|date=October 1992 | |||
|volume=89 | |||
|issue= | |||
|pages=9230-4 | |||
|url=https://www.pnas.org/content/pnas/89/19/9230.full.pdf | |||
|arxiv= | |||
|bibcode= | |||
|doi= | |||
|pmid= | |||
|accessdate=5 May 2020 }}</ref> | |||
==Samplings== | ==Samplings== | ||
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==See also== | ==See also== | ||
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* [[ | * [[A1BG core promoter gene transcriptions]] | ||
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[[Category:Gene project/Lectures]] | [[Category:Gene project/Lectures]] | ||
[[Category:Resources last modified in | [[Category:Resources last modified in May 2020]] | ||
Revision as of 04:27, 6 May 2020
Editor-In-Chief: Henry A. Hoff
The "perfect palindrome 5'-GCCACGTGGC-3' which is also known as the G-box motif."[1]
"TAF-1 can bind to the G-box and related motifs and that it functions as a transcription activator."[1]
"A G-box-related motif, containing the core sequence CACGTG is also present in the 5' regions of two other classes of light-responsive genes".[1]
"Two distinct sequence elements, the H-box (consensus CCTACC(N)7CT) and the G-box (CACGTG), are required for stimulation of the chsl5 promoter by [p-coumaric acid] 4-CA."[2]
Samplings
For the Basic programs (starting with SuccessablesGbox.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), including extending the number of nts from 958 to 4445, the programs are, are looking for, and found:
- negative strand in the negative direction (from ZSCAN22 to A1BG) is SuccessablesGbox--.bas, looking for 3'-GCCACGTGGC-5', 0,
- negative strand in the positive direction (from ZNF497 to A1BG) is SuccessablesGbox-+.bas, looking for 3'-GCCACGTGGC-5', 0,
- positive strand in the negative direction is SuccessablesGbox+-.bas, looking for 3'-GCCACGTGGC-5', 0,
- positive strand in the positive direction is SuccessablesGbox++.bas, looking for 3'-GCCACGTGGC-5', 0,
- complement, negative strand, negative direction is SuccessablesGboxc--.bas, looking for 3'-CGGTGCACCG-5', 0,
- complement, negative strand, positive direction is SuccessablesGboxc-+.bas, looking for 3'-CGGTGCACCG-5', 0,
- complement, positive strand, negative direction is SuccessablesGboxc+-.bas, looking for 3'-CGGTGCACCG-5', 0,
- complement, positive strand, positive direction is SuccessablesGboxc++.bas, looking for 3'-CGGTGCACCG-5', 0,
- inverse complement, negative strand, negative direction is SuccessablesGboxci--.bas, looking for 3'-GCCACGTGGC-5', 0,
- inverse complement, negative strand, positive direction is SuccessablesGboxci-+.bas, looking for 3'-GCCACGTGGC-5', 0,
- inverse complement, positive strand, negative direction is SuccessablesGboxci+-.bas, looking for 3'-GCCACGTGGC-5', 0,
- inverse complement, positive strand, positive direction is SuccessablesGboxci++.bas, looking for 3'-GCCACGTGGC-5', 0,
- inverse, negative strand, negative direction, is SuccessablesGboxi--.bas, looking for 3'-CGGTGCACCG-5', 0,
- inverse, negative strand, positive direction, is SuccessablesGboxi-+.bas, looking for 3'-CGGTGCACCG-5', 0,
- inverse, positive strand, negative direction, is SuccessablesGboxi+-.bas, looking for 3'-CGGTGCACCG-5', 0,
- inverse, positive strand, positive direction, is SuccessablesGboxi++.bas, looking for 3'-CGGTGCACCG-5', 0.
Acknowledgements
The content on this page was first contributed by: Henry A. Hoff.
Initial content for this page in some instances came from Wikiversity.
See also
References
- ↑ 1.0 1.1 1.2 K Oeda, J Salinas, and N H Chua (1991). "A tobacco bZip transcription activator (TAF-1) binds to a G-box-like motif conserved in plant genes". The EMBO Journal. 10 (7): 1793–1802. Retrieved 2017-02-13. Unknown parameter
|month=ignored (help) - ↑ Gary J. Loake, Ouriel Faktor, Christopher J. Lamb, and Richard A. Dixon (October 1992). "Combination of H-box [CCTACC(N)7CT] and G-box (CACGTG) cis elements is necessary for feed-forward stimulation of a chalcone synthase promoter by the phenylpropanoid-pathway intermediate p-coumaricacid" (PDF). Proceedings of the National Academy of Sciences USA. 89: 9230–4. Retrieved 5 May 2020.