Mcm1 regulatory factor gene transcriptions: Difference between revisions

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# positive strand, positive direction, looking for TT(A/T)CCNN(A/T)TNGG(A/T)AA, 0.
# positive strand, positive direction, looking for TT(A/T)CCNN(A/T)TNGG(A/T)AA, 0.
# negative strand, positive direction, looking for TT(A/T)CCNN(A/T)TNGG(A/T)AA, 0.
# negative strand, positive direction, looking for TT(A/T)CCNN(A/T)TNGG(A/T)AA, 0.
# complement, negative strand, negative direction, looking for TTTTTTTT, 0.
# complement, negative strand, negative direction, looking for AA(A/T)GGNN(A/T)ANCC(A/T)TT, 0.
# complement, positive strand, negative direction, looking for TTTTTTTT, 0.
# complement, positive strand, negative direction, looking for AA(A/T)GGNN(A/T)ANCC(A/T)TT, 0.
# complement, positive strand, positive direction, looking for TTTTTTTT, 0.
# complement, positive strand, positive direction, looking for AA(A/T)GGNN(A/T)ANCC(A/T)TT, 0.
# complement, negative strand, positive direction, looking for TTTTTTTT, 0.
# complement, negative strand, positive direction, looking for AA(A/T)GGNN(A/T)ANCC(A/T)TT, 0.
# inverse complement, negative strand, negative direction, looking for TTTTTTTT, 0.
# inverse complement, negative strand, negative direction, looking for TT(A/T)CCNA(A/T)NNGG(A/T)AA, 0.
# inverse complement, positive strand, negative direction, looking for TTTTTTTT, 0.
# inverse complement, positive strand, negative direction, looking for TT(A/T)CCNA(A/T)NNGG(A/T)AA, 0.
# inverse complement, positive strand, positive direction, looking for TTTTTTTT, 0.
# inverse complement, positive strand, positive direction, looking for TT(A/T)CCNA(A/T)NNGG(A/T)AA, 0.
# inverse complement, negative strand, positive direction, looking for TTTTTTTT, 0.
# inverse complement, negative strand, positive direction, looking for TT(A/T)CCNA(A/T)NNGG(A/T)AA, 0.
# inverse negative strand, negative direction, looking for AA(A/T)GGNT(A/T)NNCC(A/T)TT, 0.
# inverse negative strand, negative direction, looking for AA(A/T)GGNT(A/T)NNCC(A/T)TT, 0.
# inverse positive strand, negative direction, looking for AAAAAAAA, 0.
# inverse positive strand, negative direction, looking for AA(A/T)GGNT(A/T)NNCC(A/T)TT, 0.
# inverse positive strand, positive direction, looking for AAAAAAAA, 0.
# inverse positive strand, positive direction, looking for AA(A/T)GGNT(A/T)NNCC(A/T)TT, 0.
# inverse negative strand, positive direction, looking for AAAAAAAA, 0.
# inverse negative strand, positive direction, looking for AA(A/T)GGNT(A/T)NNCC(A/T)TT, 0.
 
===AAA UTR gene transcriptions===
{{main|UTR promoter gene transcriptions}}
 
===AAA core promoters===
{{main|Core promoter gene transcriptions}}
 
===AAA proximal promoters===
{{main|Proximal promoter gene transcriptions}}
 
===AAA distal promoters===
{{main|Distal promoter gene transcriptions}}


==See also==
==See also==

Revision as of 03:17, 4 February 2021

Associate Editor(s)-in-Chief: Henry A. Hoff

Human genes

Interactions

Consensus sequences

Consensus sequences: 1N2N3(A/C/T)4(A/C/T)5N6C7(C/T)8(A/C/T)9(A/C/T)10(A/T)11(A/C/T)12(A/C/T)13N14(A/G)15(C/G/T)16(A/C/T)17N18N19N.[1]

The primary consensus sequence is apparently TT(A/T)CCNN(A/T)TNGG(A/T)AA.[1]

Samplings

Copying a consensus regulatory element: TT(A/T)CCNN(A/T)TNGG(A/T)AA and putting the sequence in "⌘F" finds no locations for this sequence in any A1BG direction as can be found by the computer programs.

For the Basic programs testing consensus sequence TT(A/T)CCNN(A/T)TNGG(A/T)AA (starting with SuccessablesMcm.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:

  1. negative strand, negative direction, looking for TT(A/T)CCNN(A/T)TNGG(A/T)AA, 0.
  2. positive strand, negative direction, looking for TT(A/T)CCNN(A/T)TNGG(A/T)AA, 0.
  3. positive strand, positive direction, looking for TT(A/T)CCNN(A/T)TNGG(A/T)AA, 0.
  4. negative strand, positive direction, looking for TT(A/T)CCNN(A/T)TNGG(A/T)AA, 0.
  5. complement, negative strand, negative direction, looking for AA(A/T)GGNN(A/T)ANCC(A/T)TT, 0.
  6. complement, positive strand, negative direction, looking for AA(A/T)GGNN(A/T)ANCC(A/T)TT, 0.
  7. complement, positive strand, positive direction, looking for AA(A/T)GGNN(A/T)ANCC(A/T)TT, 0.
  8. complement, negative strand, positive direction, looking for AA(A/T)GGNN(A/T)ANCC(A/T)TT, 0.
  9. inverse complement, negative strand, negative direction, looking for TT(A/T)CCNA(A/T)NNGG(A/T)AA, 0.
  10. inverse complement, positive strand, negative direction, looking for TT(A/T)CCNA(A/T)NNGG(A/T)AA, 0.
  11. inverse complement, positive strand, positive direction, looking for TT(A/T)CCNA(A/T)NNGG(A/T)AA, 0.
  12. inverse complement, negative strand, positive direction, looking for TT(A/T)CCNA(A/T)NNGG(A/T)AA, 0.
  13. inverse negative strand, negative direction, looking for AA(A/T)GGNT(A/T)NNCC(A/T)TT, 0.
  14. inverse positive strand, negative direction, looking for AA(A/T)GGNT(A/T)NNCC(A/T)TT, 0.
  15. inverse positive strand, positive direction, looking for AA(A/T)GGNT(A/T)NNCC(A/T)TT, 0.
  16. inverse negative strand, positive direction, looking for AA(A/T)GGNT(A/T)NNCC(A/T)TT, 0.

See also

References

  1. 1.0 1.1 Matthew J. Rossi, William K.M. Lai and B. Franklin Pugh (21 March 2018). "Genome-wide determinants of sequence-specific DNA binding of general regulatory factors". Genome Research. 28: 497–508. doi:10.1101/gr.229518.117. PMID 29563167. Retrieved 31 August 2020.

External links