Pollen1 element gene transcriptions: Difference between revisions

Associate Editor(s)-in-Chief: Henry A. Hoff

"Electrophoretic mobility shift assays identified a pollen-specific cis-acting element POLLEN1 (AGAAA) mapped at AtACBP4 (−157/−153) which interacted with nuclear proteins from flower and this was substantiated by DNase I footprinting."^[1]

"POLLEN1 and the TCCACCATA element are co-dependent regulatory elements responsible for pollen-specific activation of tomato LAT52 (Bate and Twell 1998)."^[1]

Human genes

Consensus sequences

"Given that AtACBP4pro::GUS (−156/−67) could drive promoter activity for pollen expression, [electrophoretic mobility shift assays] EMSAs were carried out to investigate the role of the putative POLLEN1 cis-element, AGAAA (−150/−146), and its adjacent co-dependent regulatory element TCCACCATA (–141/–133)."^[1]

Pollen and TCC regulatory element samplings

Copying the consensus for POLLEN1: 3'-AGAAA-5' and putting the sequence in "⌘F" finds many locations for this sequence in the A1BG directions as can be found by the computer programs. POLLEN1, AGAAA (−150/−146), has adjacent co-dependent regulatory element TCCACCATA (–141/–133), so that a combined consensus sequence expected would have AGAAANNNNTCCACCATA.

For the Basic programs testing consensus sequence AGAAANNNNTCCACCATA (starting with SuccessablesPol.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:

negative strand, negative direction, looking for AGAAANNNNTCCACCATA, 0.
positive strand, negative direction, looking for AGAAANNNNTCCACCATA, 0.
positive strand, positive direction, looking for AGAAANNNNTCCACCATA, 0.
negative strand, positive direction, looking for AGAAANNNNTCCACCATA, 0.
complement, negative strand, negative direction, looking for TCTTTNNNNAGGTGGTAT, 0.
complement, positive strand, negative direction, looking for TCTTTNNNNAGGTGGTAT, 0.
complement, positive strand, positive direction, looking for TCTTTNNNNAGGTGGTAT, 0.
complement, negative strand, positive direction, looking for TCTTTNNNNAGGTGGTAT, 0.
inverse complement, negative strand, negative direction, looking for TATGGTGGANNNNTTTCT, 0.
inverse complement, positive strand, negative direction, looking for TATGGTGGANNNNTTTCT, 0.
inverse complement, positive strand, positive direction, looking for TATGGTGGANNNNTTTCT, 0.
inverse complement, negative strand, positive direction, looking for TATGGTGGANNNNTTTCT, 0.
inverse negative strand, negative direction, looking for ATACCACCTNNNNAAAGA, 0.
inverse positive strand, negative direction, looking for ATACCACCTNNNNAAAGA, 0.
inverse positive strand, positive direction, looking for ATACCACCTNNNNAAAGA, 0.
inverse negative strand, positive direction, looking for ATACCACCTNNNNAAAGA, 0.

References

↑ ^1.0 ^1.1 ^1.2 Zi-Wei Ye, Jie Xu, Jianxin Shi, Dabing Zhang and Mee-Len Chye (January 2017). "Kelch-motif containing acyl-CoA binding proteins AtACBP4 and AtACBP5 are differentially expressed and function in floral lipid metabolism" (PDF). Plant Molecular Biology. 93: 209–225. doi:10.1007/s11103-016-0557-5. PMID 27826761. Retrieved 7 May 2020.

External links

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Met31p box gene transcriptions Metal responsive element gene transcriptions Middle sporulation element gene transcriptions Mig1p gene transcriptions Model samplings Motif ten element gene transcriptions Msn2,4p gene transcriptions Musashi binding element gene transcriptions MYB recognition element gene transcriptions Myelocytomatosis transcription factor gene transcriptions Myocyte enhancer factor gene transcriptions N-boxes Nanos/Pumilio response element Ndt80p gene transcriptions Nuclear factor 1 Nuclear factor 𝜿B Nuclear factor gene transcriptions Nuclear factor of activated T cell gene transcriptions (NFAT) Nuclear factor Y gene transcriptions Nutrient-sensing response element gene transcriptions Oaf1p gene transcriptions ORE1 binding site gene transcriptions p53 response element gene transcriptions P63 DNA-binding site gene transcriptions P box gene transcriptions Pdr1,3p gene transcriptions Peroxisome proliferator hormone response element gene transcriptions Phosphate 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@@ Line 24: / Line 24: @@
 "Given that ''AtACBP4pro::GUS'' (−156/−67) could drive promoter activity for pollen expression, [electrophoretic mobility shift assays] EMSAs were carried out to investigate the role of the putative POLLEN1 ''cis''-element, AGAAA (−150/−146), and its adjacent co-dependent regulatory element TCCACCATA (–141/–133)."<ref name=Ye/>
-==Samplings==
+==Pollen and TCC regulatory element samplings==
+{{main|Model samplings}}
+Copying the consensus for POLLEN1: 3'-AGAAA-5' and putting the sequence in "⌘F" finds many locations for this sequence in the A1BG directions as can be found by the computer programs. POLLEN1, AGAAA (−150/−146), has adjacent co-dependent regulatory element TCCACCATA (–141/–133), so that a combined consensus sequence expected would have AGAAANNNNTCCACCATA.
-Copying the consensus for POLLEN1: 3'-AGAAA-5' and putting the sequence in "⌘F" finds many locations for this sequence in the A1BG directions as can be found by the computer programs.
+For the Basic programs testing consensus sequence AGAAANNNNTCCACCATA (starting with SuccessablesPol.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:
+# negative strand, negative direction, looking for AGAAANNNNTCCACCATA, 0.
+# positive strand, negative direction, looking for AGAAANNNNTCCACCATA, 0.
+# positive strand, positive direction, looking for AGAAANNNNTCCACCATA, 0.
+# negative strand, positive direction, looking for AGAAANNNNTCCACCATA, 0.
+# complement, negative strand, negative direction, looking for TCTTTNNNNAGGTGGTAT, 0.
+# complement, positive strand, negative direction, looking for TCTTTNNNNAGGTGGTAT, 0.
+# complement, positive strand, positive direction, looking for TCTTTNNNNAGGTGGTAT, 0.
+# complement, negative strand, positive direction, looking for TCTTTNNNNAGGTGGTAT, 0.
+# inverse complement, negative strand, negative direction, looking for TATGGTGGANNNNTTTCT, 0.
+# inverse complement, positive strand, negative direction, looking for TATGGTGGANNNNTTTCT, 0.
+# inverse complement, positive strand, positive direction, looking for TATGGTGGANNNNTTTCT, 0.
+# inverse complement, negative strand, positive direction, looking for TATGGTGGANNNNTTTCT, 0.
+# inverse negative strand, negative direction, looking for ATACCACCTNNNNAAAGA, 0.
+# inverse positive strand, negative direction, looking for ATACCACCTNNNNAAAGA, 0.
+# inverse positive strand, positive direction, looking for ATACCACCTNNNNAAAGA, 0.
+# inverse negative strand, positive direction, looking for ATACCACCTNNNNAAAGA, 0.
 ==See also==

Pollen1 element gene transcriptions: Difference between revisions

Revision as of 02:22, 13 February 2021

Contents

Human genes

Consensus sequences

Pollen and TCC regulatory element samplings

See also

References

External links

Navigation menu

Pollen1 element gene transcriptions: Difference between revisions

Revision as of 02:22, 13 February 2021

Human genes

Consensus sequences

Pollen and TCC regulatory element samplings

See also

References

External links

Navigation menu

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