Smp1p gene transcriptions: Difference between revisions

Associate Editor(s)-in-Chief: Henry A. Hoff

Human genes

Consensus sequences

The upstream activating sequence (UAS) for Smp1p is 5'-ACTACTA(T/A)₄TAG-3' in the promoters of STL1 and CWP1 regarding osmotic stress response [68].^[1]

Samplings

Copying the apparent consensus sequence for SMP (ACTACTA) and putting it in "⌘F" finds none located between ZSCAN22 and none between ZNF497 and A1BG as can be found by the computer programs.

For the Basic programs testing consensus sequence ACTACTA(T/A)(T/A)(T/A)(T/A)TAG (starting with SuccessablesSMP.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:

negative strand, negative direction, looking for ACTACTA(T/A)(T/A)(T/A)(T/A)TAG, 0.
positive strand, negative direction, looking for ACTACTA(T/A)(T/A)(T/A)(T/A)TAG, 0.
positive strand, positive direction, looking for ACTACTA(T/A)(T/A)(T/A)(T/A)TAG, 0.
negative strand, positive direction, looking for AAAAAAAA, 0.
complement, negative strand, negative direction, looking for TGATGAT(A/T)(A/T)(A/T)(A/T)ATC, 0.
complement, positive strand, negative direction, looking for TGATGAT(A/T)(A/T)(A/T)(A/T)ATC, 0.
complement, positive strand, positive direction, looking for TTTTTTTT, 0.
complement, negative strand, positive direction, looking for TGATGAT(A/T)(A/T)(A/T)(A/T)ATC, 0.
inverse complement, negative strand, negative direction, looking for TTTTTTTT, 0.
inverse complement, positive strand, negative direction, looking for TTTTTTTT, 0.
inverse complement, positive strand, positive direction, looking for TTTTTTTT, 0.
inverse complement, negative strand, positive direction, looking for TTTTTTTT, 0.
inverse negative strand, negative direction, looking for AAAAAAAA, 0.
inverse positive strand, negative direction, looking for AAAAAAAA, 0.
inverse positive strand, positive direction, looking for AAAAAAAA, 0.
inverse negative strand, positive direction, looking for AAAAAAAA, 0.

SMP UTRs

SMP core promoters

SMP proximal promoters

SMP distal promoters

References

↑ Hongting Tang, Yanling Wu, Jiliang Deng, Nanzhu Chen, Zhaohui Zheng, Yongjun Wei, Xiaozhou Luo, and Jay D. Keasling (6 August 2020). "Promoter Architecture and Promoter Engineering in Saccharomyces cerevisiae". Metabolites. 10 (8): 320–39. doi:10.3390/metabo10080320. PMID 32781665 Check |pmid= value (help). Retrieved 18 September 2020.

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sporulation element gene transcriptions Mig1p gene transcriptions Model samplings Motif ten element gene transcriptions Msn2,4p gene transcriptions Musashi binding element gene transcriptions MYB recognition element gene transcriptions Myelocytomatosis transcription factor gene transcriptions Myocyte enhancer factor gene transcriptions N-boxes Nanos/Pumilio response element Ndt80p gene transcriptions Nuclear factor 1 Nuclear factor 𝜿B Nuclear factor gene transcriptions Nuclear factor of activated T cell gene transcriptions (NFAT) Nuclear factor Y gene transcriptions Nutrient-sensing response element gene transcriptions Oaf1p gene transcriptions ORE1 binding site gene transcriptions p53 response element gene transcriptions P63 DNA-binding site gene transcriptions P box gene transcriptions Pdr1,3p gene transcriptions Peroxisome proliferator hormone response element gene transcriptions Phosphate starvation-response transcription factor gene transcriptions Pollen1 element gene 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transcriptions Shoot specific element gene transcriptions Sip4p gene transcriptions Smp1p gene transcriptions Sp1 gene transcriptions Spaceflight gene expressions Specificity protein gene transcriptions STAT gene transcriptions Ste12p gene transcriptions Sterol response element gene transcriptions Sucrose box gene transcriptions Synaptic Activity-Responsive Elements TACTAAC box gene transcriptions TAGteam gene transcriptions Tapetum box gene transcriptions TATA binding protein associated factor gene transcriptions TATA binding protein gene transcriptions TATA box actin/cytoskeleton/contractile family TATA box albumin family TATA box aldolase family TATA box alkaline phosphatase family TATA box annexin family TATA box cytochrome superfamily TATA box gene transcriptions TATA box heat shock family TATA box histone family TATA box human genes TATA box keratin family TATA box lipase family TATA box peptidase family TATA box platelet-derived growth factor family TATA box selenium-binding 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@@ Line 22: / Line 22: @@
 ==Samplings==
-Copying the apparent consensus sequence for Smp1p (ACTACTA) and putting it in "⌘F" finds none located between ZSCAN22 and none between ZNF497 and A1BG as can be found by the computer programs.
+Copying the apparent consensus sequence for SMP (ACTACTA) and putting it in "⌘F" finds none located between ZSCAN22 and none between ZNF497 and A1BG as can be found by the computer programs.
-For the Basic programs (starting with SuccessablesSmp1p.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are looking for, and found:
+For the Basic programs testing consensus sequence ACTACTA(T/A)(T/A)(T/A)(T/A)TAG (starting with SuccessablesSMP.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:
-# negative strand in the negative direction is SuccessablesSmp1p--.bas, looking for 5'-A-C-T-A-C-T-A-(T/A)-(T/A)-(T/A)-(T/A)-T-A-G-3', 0.
+# negative strand, negative direction, looking for ACTACTA(T/A)(T/A)(T/A)(T/A)TAG, 0.
+# positive strand, negative direction, looking for ACTACTA(T/A)(T/A)(T/A)(T/A)TAG, 0.
+# positive strand, positive direction, looking for ACTACTA(T/A)(T/A)(T/A)(T/A)TAG, 0.
+# negative strand, positive direction, looking for AAAAAAAA, 0.
+# complement, negative strand, negative direction, looking for TGATGAT(A/T)(A/T)(A/T)(A/T)ATC, 0.
+# complement, positive strand, negative direction, looking for TGATGAT(A/T)(A/T)(A/T)(A/T)ATC, 0.
+# complement, positive strand, positive direction, looking for TTTTTTTT, 0.
+# complement, negative strand, positive direction, looking for TGATGAT(A/T)(A/T)(A/T)(A/T)ATC, 0.
+# inverse complement, negative strand, negative direction, looking for TTTTTTTT, 0.
+# inverse complement, positive strand, negative direction, looking for TTTTTTTT, 0.
+# inverse complement, positive strand, positive direction, looking for TTTTTTTT, 0.
+# inverse complement, negative strand, positive direction, looking for TTTTTTTT, 0.
+# inverse negative strand, negative direction, looking for AAAAAAAA, 0.
+# inverse positive strand, negative direction, looking for AAAAAAAA, 0.
+# inverse positive strand, positive direction, looking for AAAAAAAA, 0.
+# inverse negative strand, positive direction, looking for AAAAAAAA, 0.
+===SMP UTRs===
+{{main|UTR promoter gene transcriptions}}
+===SMP core promoters===
+{{main|Core promoter gene transcriptions}}
+===SMP proximal promoters===
+{{main|Proximal promoter gene transcriptions}}
+===SMP distal promoters===
+{{main|Distal promoter gene transcriptions}}
 ==See also==