Zap1p gene transcriptions: Difference between revisions
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|accessdate=18 September 2020 }}</ref> | |accessdate=18 September 2020 }}</ref> | ||
== | ==ZAP samplings== | ||
Copying the apparent consensus sequence for Zap1p (ACCCTCA) and putting it in "⌘F" finds none located between ZSCAN22 and none between ZNF497 and A1BG as can be found by the computer programs. | Copying the apparent consensus sequence for Zap1p (ACCCTCA) and putting it in "⌘F" finds none located between ZSCAN22 and none between ZNF497 and A1BG as can be found by the computer programs. | ||
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# complement, negative strand, positive direction, looking for TGG(A/G)(A/G)NTTCCA, 0. | # complement, negative strand, positive direction, looking for TGG(A/G)(A/G)NTTCCA, 0. | ||
# inverse complement, negative strand, negative direction, looking for ACCTTN(A/G)(A/G)GGT, 0. | # inverse complement, negative strand, negative direction, looking for ACCTTN(A/G)(A/G)GGT, 0. | ||
# inverse complement, positive strand, negative direction, looking for | # inverse complement, positive strand, negative direction, looking for ACCTTN(A/G)(A/G)GGT, 0. | ||
# inverse complement, positive strand, positive direction, looking for | # inverse complement, positive strand, positive direction, looking for ACCTTN(A/G)(A/G)GGT, 0. | ||
# inverse complement, negative strand, positive direction, looking for | # inverse complement, negative strand, positive direction, looking for ACCTTN(A/G)(A/G)GGT, 0. | ||
# inverse negative strand, negative direction, looking for TGGAAN(C/T)(C/T)CCA, 0. | # inverse negative strand, negative direction, looking for TGGAAN(C/T)(C/T)CCA, 0. | ||
# inverse positive strand, negative direction, looking for | # inverse positive strand, negative direction, looking for TGGAAN(C/T)(C/T)CCA, 0. | ||
# inverse positive strand, positive direction, looking for | # inverse positive strand, positive direction, looking for TGGAAN(C/T)(C/T)CCA, 0. | ||
# inverse negative strand, positive direction, looking for | # inverse negative strand, positive direction, looking for TGGAAN(C/T)(C/T)CCA, 0. | ||
==See also== | ==See also== | ||
Revision as of 15:52, 15 March 2021
Associate Editor(s)-in-Chief: Henry A. Hoff
Human genes
Consensus sequences
The upstream activating sequence (UAS) for Zap1p is 5'-ACC(C/T)(C/T)(A/C/G/T)AAGGT-3' in the promoters of ZRT1 and ZRT2 regarding this zinc-regulated transcription factor [67].[1]
ZAP samplings
Copying the apparent consensus sequence for Zap1p (ACCCTCA) and putting it in "⌘F" finds none located between ZSCAN22 and none between ZNF497 and A1BG as can be found by the computer programs.
For the Basic programs (starting with SuccessablesZAP.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are looking for, and found:
- negative strand, negative direction, looking for ACC(C/T)(C/T)NAAGGT, 0.
- positive strand, negative direction, looking for ACC(C/T)(C/T)NAAGGT, 0.
- positive strand, positive direction, looking for ACC(C/T)(C/T)NAAGGT, 0.
- negative strand, positive direction, looking for ACC(C/T)(C/T)NAAGGT, 0.
- complement, negative strand, negative direction, looking for TGG(A/G)(A/G)NTTCCA, 0.
- complement, positive strand, negative direction, looking for TGG(A/G)(A/G)NTTCCA, 0.
- complement, positive strand, positive direction, looking for TGG(A/G)(A/G)NTTCCA, 0.
- complement, negative strand, positive direction, looking for TGG(A/G)(A/G)NTTCCA, 0.
- inverse complement, negative strand, negative direction, looking for ACCTTN(A/G)(A/G)GGT, 0.
- inverse complement, positive strand, negative direction, looking for ACCTTN(A/G)(A/G)GGT, 0.
- inverse complement, positive strand, positive direction, looking for ACCTTN(A/G)(A/G)GGT, 0.
- inverse complement, negative strand, positive direction, looking for ACCTTN(A/G)(A/G)GGT, 0.
- inverse negative strand, negative direction, looking for TGGAAN(C/T)(C/T)CCA, 0.
- inverse positive strand, negative direction, looking for TGGAAN(C/T)(C/T)CCA, 0.
- inverse positive strand, positive direction, looking for TGGAAN(C/T)(C/T)CCA, 0.
- inverse negative strand, positive direction, looking for TGGAAN(C/T)(C/T)CCA, 0.
See also
References
- ↑ Hongting Tang, Yanling Wu, Jiliang Deng, Nanzhu Chen, Zhaohui Zheng, Yongjun Wei, Xiaozhou Luo, and Jay D. Keasling (6 August 2020). "Promoter Architecture and Promoter Engineering in Saccharomyces cerevisiae". Metabolites. 10 (8): 320–39. doi:10.3390/metabo10080320. PMID 32781665 Check
|pmid=value (help). Retrieved 18 September 2020.