Rap1 regulatory factor gene transcriptions: Difference between revisions

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# Rappr8ci: 0.
# Rappr8ci: 0.
# Rappr9ci: 0.
# Rappr9ci: 0.
===Rappr UTRs===
{{main|UTR promoter gene transcriptions}}
===Rappr core promoters===
{{main|Core promoter gene transcriptions}}
===Rappr proximal promoters===
{{main|Proximal promoter gene transcriptions}}


===Rappr distal promoters===
===Rappr distal promoters===
{{main|Distal promoter gene transcriptions}}
{{main|Distal promoter gene transcriptions}}
# Rappr6: 1, GCACCCGGGCATC at 1454.
# Rappr4ci: 1, TATGCCTGGGTTT at 1380.


==Rap1 full consensus samplings==
==Rap1 full consensus samplings==

Revision as of 05:30, 13 June 2021

Associate Editor(s)-in-Chief: Henry A. Hoff

"Rap1 is another GRF that organizes chromatin, binds promoters of genes that encode ribosomal and glycolytic proteins, and binds telomeres (Shore 1994; Ganapathi et al. 2011; Hughes and de Boer 2013). [...] DNA shape analysis revealed that Rap1 motifs possess an intrinsically wide minor groove spanning the central degenerate region of the motif that was wider at binding-competent sites [...]. A clear trend was observed between increased width of the minor groove in the central degenerate region of the motif and increased Rap1 binding in vitro."[1]

Human genes

Consensus sequences

Consensus sequences: C(A/C/G)(A/C/G)(A/G)(C/G/T)C(A/C/T)(A/G/T)(C/G/T)(A/G/T)(A/C/G)(A/C)(A/C/T)(A/C/T).[1]

Reduced consensus sequence including more frequent nucleotides: (A/G)(A/C)ACCC(A/G)N(A/G)C(A/C)(C/T)(A/C).[1]

"When the core DNA sequence of the Rap1 motif [...] was held constant (ACCCRnRCA), less than half of the sites were detectably bound [...]."[1]

Rap1 samplings

Copying an apparent consensus sequence for Rap1 (CCCACCAACAAAA) and putting it in "⌘F" finds none located between ZSCAN22 or none between ZNF497 and A1BG as can be found by the computer programs.

For the Basic programs testing consensus sequence ACCC(A/G)N(A/G)CA (starting with SuccessablesRAP.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:

  1. negative strand, negative direction, looking for ACCC(A/G)N(A/G)CA, 0.
  2. positive strand, negative direction, looking for ACCC(A/G)N(A/G)CA, 0.
  3. positive strand, positive direction, looking for ACCC(A/G)N(A/G)CA, 0.
  4. negative strand, positive direction, looking for ACCC(A/G)N(A/G)CA, 0.
  5. complement, negative strand, negative direction, looking for TGGG(C/T)N(C/T)GT, 0.
  6. complement, positive strand, negative direction, looking for TGGG(C/T)N(C/T)GT, 0.
  7. complement, positive strand, positive direction, looking for TGGG(C/T)N(C/T)GT, 0.
  8. complement, negative strand, positive direction, looking for TGGG(C/T)N(C/T)GT, 0.
  9. inverse complement, negative strand, negative direction, looking for TG(C/T)N(C/T)GGGT, 0.
  10. inverse complement, positive strand, negative direction, looking for TG(C/T)N(C/T)GGGT, 0.
  11. inverse complement, positive strand, positive direction, looking for TG(C/T)N(C/T)GGGT, 0.
  12. inverse complement, negative strand, positive direction, looking for TG(C/T)N(C/T)GGGT, 0.
  13. inverse negative strand, negative direction, looking for AC(A/G)N(A/G)CCCA, 0.
  14. inverse positive strand, negative direction, looking for AC(A/G)N(A/G)CCCA, 0.
  15. inverse positive strand, positive direction, looking for AC(A/G)N(A/G)CCCA, 0.
  16. inverse negative strand, positive direction, looking for AC(A/G)N(A/G)CCCA, 0.

Random dataset samplings

  1. Rapr0: 0.
  2. Rapr1: 0.
  3. Rapr2: 0.
  4. Rapr3: 0.
  5. Rapr4: 0.
  6. Rapr5: 0.
  7. Rapr6: 0.
  8. Rapr7: 0.
  9. Rapr8: 0.
  10. Rapr9: 0.
  11. Rapr0ci: 0.
  12. Rapr1ci: 0.
  13. Rapr2ci: 0.
  14. Rapr3ci: 0.
  15. Rapr4ci: 0.
  16. Rapr5ci: 0.
  17. Rapr6ci: 0.
  18. Rapr7ci: 0.
  19. Rapr8ci: 0.
  20. Rapr9ci: 0.

Rapr UTRs

Main article: UTR promoter gene transcriptions

Rapr core promoters

Main article: Core promoter gene transcriptions

Rapr proximal promoters

Main article: Proximal promoter gene transcriptions

Rapr distal promoters

Main article: Distal promoter gene transcriptions

Rap1 prevalent samplings

Main article: Model samplings

For the Basic programs testing consensus sequence (A/G)(A/C)ACCC(A/G)N(A/G)C(A/C)(C/T)(A/C) (starting with SuccessablesRAPP.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:

  1. negative strand, negative direction, looking for (A/G)(A/C)ACCC(A/G)N(A/G)C(A/C)(C/T)(A/C), 0.
  2. positive strand, negative direction, looking for (A/G)(A/C)ACCC(A/G)N(A/G)C(A/C)(C/T)(A/C), 0.
  3. positive strand, positive direction, looking for (A/G)(A/C)ACCC(A/G)N(A/G)C(A/C)(C/T)(A/C), 1, GAACCCACACCTC at 1807.
  4. negative strand, positive direction, looking for (A/G)(A/C)ACCC(A/G)N(A/G)C(A/C)(C/T)(A/C), 0.
  5. complement, negative strand, negative direction, looking for (C/T)(G/T)TGGG(C/T)N(C/T)G(G/T)(A/G)(G/T), 0.
  6. complement, positive strand, negative direction, looking for (C/T)(G/T)TGGG(C/T)N(C/T)G(G/T)(A/G)(G/T), 0.
  7. complement, positive strand, positive direction, looking for (C/T)(G/T)TGGG(C/T)N(C/T)G(G/T)(A/G)(G/T), 0.
  8. complement, negative strand, positive direction, looking for (C/T)(G/T)TGGG(C/T)N(C/T)G(G/T)(A/G)(G/T), 1, CTTGGGTGTGGAG at 1807.
  9. inverse complement, negative strand, negative direction, looking for (G/T)(A/G)(G/T)G(C/T)N(C/T)GGGT(G/T)(C/T), 0.
  10. inverse complement, positive strand, negative direction, looking for (G/T)(A/G)(G/T)G(C/T)N(C/T)GGGT(G/T)(C/T), 0.
  11. inverse complement, positive strand, positive direction, looking for (G/T)(A/G)(G/T)G(C/T)N(C/T)GGGT(G/T)(C/T), 0.
  12. inverse complement, negative strand, positive direction, looking for (G/T)(A/G)(G/T)G(C/T)N(C/T)GGGT(G/T)(C/T), 0.
  13. inverse negative strand, negative direction, looking for (A/C)(C/T)(A/C)C(A/G)N(A/G)CCCA(A/C)(A/G), 0.
  14. inverse positive strand, negative direction, looking for (A/C)(C/T)(A/C)C(A/G)N(A/G)CCCA(A/C)(A/G), 0.
  15. inverse positive strand, positive direction, looking for (A/C)(C/T)(A/C)C(A/G)N(A/G)CCCA(A/C)(A/G), 0.
  16. inverse negative strand, positive direction, looking for (A/C)(C/T)(A/C)C(A/G)N(A/G)CCCA(A/C)(A/G), 0.

RAPP distal promoters

Main article: Distal promoter gene transcriptions

Positive strand, positive direction: GAACCCACACCTC at 1807.

Random dataset samplings

  1. Rappr0: 0.
  2. Rappr1: 0.
  3. Rappr2: 0.
  4. Rappr3: 0.
  5. Rappr4: 0.
  6. Rappr5: 0.
  7. Rappr6: 1, GCACCCGGGCATC at 1454.
  8. Rappr7: 0.
  9. Rappr8: 0.
  10. Rappr9: 0.
  11. Rappr0ci: 0.
  12. Rappr1ci: 0.
  13. Rappr2ci: 0.
  14. Rappr3ci: 0.
  15. Rappr4ci: 1, TATGCCTGGGTTT at 1380.
  16. Rappr5ci: 0.
  17. Rappr6ci: 0.
  18. Rappr7ci: 0.
  19. Rappr8ci: 0.
  20. Rappr9ci: 0.

Rappr distal promoters

Main article: Distal promoter gene transcriptions
  1. Rappr6: 1, GCACCCGGGCATC at 1454.
  2. Rappr4ci: 1, TATGCCTGGGTTT at 1380.

Rap1 full consensus samplings

Main article: Model samplings

Copying a responsive elements consensus sequence C(A/C/G)(A/C/G)(A/G)(C/G/T)C(A/C/T)(A/G/T)(C/G/T)(A/G/T)(A/C/G)(A/C)(A/C/T)(A/C/T) and putting the sequence in "⌘F" finds none between ZNF497 and A1BG or one between ZSCAN22 and A1BG as can be found by the computer programs. With all of the multiples possible the total possible is 26,244.

For the Basic programs testing consensus sequence C(A/C/G)(A/C/G)(A/G)(C/G/T)C(A/C/T)(A/G/T)(C/G/T)(A/G/T)(A/C/G)(A/C)(A/C/T)(A/C/T) (starting with SuccessablesRap1.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:

  1. negative strand, negative direction, looking for C(A/C/G)(A/C/G)(A/G)(C/G/T)C(A/C/T)(A/G/T)(C/G/T)(A/G/T)(A/C/G)(A/C)(A/C/T)(A/C/T), 14, CCGGTCCGTACCAC at 4109, CCGGTCCACGACAC at 3958, CGAGTCCTCAACCT at 3117, CCCACCTAGTGAAC at 3102, CCGACCCGCACCAC at 3049, CCAGTCCTCAACTT at 2594, CCGGTCCGTGCCAC at 2526, CCAGTCCTCAAACT at 2257, CGAGTCCTCAAACT at 2141, CCCGTCCTCTACCT at 1830, CCGACCCGCGCCAC at 1764, CCGGTCCGTGCCAC at 655, CCAGTCCTCTAACT at 585, CCGGCCCACGCCAC at 382.
  2. positive strand, negative direction, looking for C(A/C/G)(A/C/G)(A/G)(C/G/T)C(A/C/T)(A/G/T)(C/G/T)(A/G/T)(A/C/G)(A/C)(A/C/T)(A/C/T), 11, CCAGCCTGGGCAAC at 4042, CCAGCCATTTCCAC at 3691, CCAGCCTGGGCAAC at 3303, CACGCCATTGCACT at 3289, CCAGCCTGGGCAAC at 2775, CCCAGCCTGGGCAA at 2774, CCAGCCTGGGCAAC at 2440, CCAGTCTGGGCAAT at 1361, CACGCCTGTAGATC at 972, CCAGCCTGGGCAAC at 904, CAAGCCTGGGCAAC at 464.
  3. positive strand, positive direction, looking for C(A/C/G)(A/C/G)(A/G)(C/G/T)C(A/C/T)(A/G/T)(C/G/T)(A/G/T)(A/C/G)(A/C)(A/C/T)(A/C/T), 4, CAGACCCAGGGACC at 4424, CCCATCCGGACCCT at 3760, CGAGTCCATTGACT at 3735, CACATCCAGACAAA at 2262.
  4. negative strand, positive direction, looking for 1C(A/C/G)(A/C/G)(A/G)(C/G/T)C(A/C/T)(A/G/T)(C/G/T)(A/G/T)(A/C/G)(A/C)(A/C/T)(A/C/T), 5, CACACCCTGAGCTC at 2972, CAAGTCAGGAAATA at 2625, CGAGCCTGCAGACC at 440, CGGGGCTGGGCCCA at 422, CAGGTCCTCTGCAA at 225.
  5. inverse complement, negative strand, negative direction, looking for (A/G/T)(A/G/T)(G/T)(C/G/T)(A/C/T)(A/C/G)(A/C/T)(A/G/T)G(A/C/G)(C/T)(C/G/T)(C/G/T)G, 1, AGTTCGTTGACGGG at 3853.
  6. inverse complement, positive strand, negative direction, looking for (A/G/T)(A/G/T)(G/T)(C/G/T)(A/C/T)(A/C/G)(A/C/T)(A/G/T)G(A/C/G)(C/T)(C/G/T)(C/G/T)G, 2, AATGACCGGGTGCG at 2196, GTTGCCCAGGCTGG at 1464.
  7. inverse complement, positive strand, positive direction, looking for TTTTTTTT, 6, AGTCCATTGACTCG at 3737, TGGTTCATGGTGTG at 2601, GTGGCGTGGACCGG at 2571, GTTTTGAGGACCCG at 2503, TGGTCGCGGACGTG at 1471, TGGTCGCGGACGTG at 1371.
  8. inverse complement, negative strand, positive direction, looking for TTTTTTTT, 5, TTTCTCTTGCTGTG at 4393, AGGTACTGGCTCTG at 3122, GTGCCCCAGGTCTG at 3020, GTTGCCTAGGCGGG at 2486, AGGTCACAGGCGCG at 161.

Rap1 UTRs

Main article: UTR promoter gene transcriptions
  1. Negative strand, negative direction: CCGGTCCGTACCAC at 4109, CCGGTCCACGACAC at 3958, AGTTCGTTGACGGG at 3853, CGAGTCCTCAACCT at 3117, CCCACCTAGTGAAC at 3102, CCGACCCGCACCAC at 3049.
  2. Positive strand, negative direction: CCAGCCTGGGCAAC at 4042, CCAGCCATTTCCAC at 3691, CCAGCCTGGGCAAC at 3303, CACGCCATTGCACT at 3289.

Rap1 core promoters

Main article: Core promoter gene transcriptions
  1. Negative strand, positive direction: TTTCTCTTGCTGTG at 4393.

Rap1 proximal promoters

Main article: Proximal promoter gene transcriptions
  1. Positive strand, negative direction: CCAGCCTGGGCAAC at 2775, CCCAGCCTGGGCAA at 2774.
  1. Positive strand, positive direction: CAGACCCAGGGACC at 4424.

Rap1 distal promoters

Main article: Distal promoter gene transcriptions
  1. Negative strand, negative direction: CCAGTCCTCAACTT at 2594, CCGGTCCGTGCCAC at 2526, CCAGTCCTCAAACT at 2257, CGAGTCCTCAAACT at 2141, CCCGTCCTCTACCT at 1830, CCGACCCGCGCCAC at 1764, CCGGTCCGTGCCAC at 655, CCAGTCCTCTAACT at 585, CCGGCCCACGCCAC at 382.
  2. Positive strand, negative direction: CCAGCCTGGGCAAC at 2440, AATGACCGGGTGCG at 2196, GTTGCCCAGGCTGG at 1464, CCAGTCTGGGCAAT at 1361, CACGCCTGTAGATC at 972, CCAGCCTGGGCAAC at 904, CAAGCCTGGGCAAC at 464.
  1. Negative strand, positive direction: AGGTACTGGCTCTG at 3122, GTGCCCCAGGTCTG at 3020, CACACCCTGAGCTC at 2972, CAAGTCAGGAAATA at 2625, GTTGCCTAGGCGGG at 2486, CGAGCCTGCAGACC at 440, CGGGGCTGGGCCCA at 422, CAGGTCCTCTGCAA at 225, AGGTCACAGGCGCG at 161.
  2. Positive strand, positive direction: CCCATCCGGACCCT at 3760, AGTCCATTGACTCG at 3737, CGAGTCCATTGACT at 3735, TGGTTCATGGTGTG at 2601, GTGGCGTGGACCGG at 2571, GTTTTGAGGACCCG at 2503, CACATCCAGACAAA at 2262, TGGTCGCGGACGTG at 1471, TGGTCGCGGACGTG at 1371.

Rap1 random dataset samplings

  1. Rap1r0: 8, CAAGGCCGTTCAAA at 4165, CAAGTCAAGACCTT at 4050, CCAGGCTGTGGCTC at 2846, CACGTCCTCACCAT at 2601, CAAACCAGTGAACT at 1331, CCAAGCTGGAACTA at 1303, CCAGGCTGGGCATC at 1255, CCGGGCTGGGAAAC at 831.
  2. Rap1r1: 9, CGAGCCAAGGACCC at 4467, CCGATCCTTGGCCC at 4087, CACGTCCTTAACTA at 3437, CGGGTCAATGCCTT at 2784, CCGACCCAGTAAAT at 2362, CCGACCATCGCAAA at 1774, CGAAGCATCAAAAA at 1440, CGGGTCTACGAACA at 611, CCAACCTTTACACT at 528.
  3. Rap1r2: 1, CGAAGCCTTACACA at 509.
  4. Rap1r3: 3, CAAATCCTCAGATA at 2773, CCGGTCCAGGGCCA at 1592, CCAGCCCTCTGAAC at 1434.
  5. Rap1r4: 5, CGAACCAAGTCCTT at 3972, CCGACCTATAAACT at 3687, CGGGCCTAGGAACC at 3170, CGAGCCCATTGCCC at 1846, CCAATCTTGTCCAC at 1770.
  6. Rap1r5: 8, CCAATCCTGAAAAA at 4165, CCCACCAGGGCACC at 3507, CGAATCCGGGCAAT at 3457, CAGGCCTTTAAAAT at 2372, CACACCTTCGCCTC at 1650, CCCGCCAGCTCCAC at 800, CGAAGCCTTGCCCT at 481, CCCGCCCTTGGCCC at 357.
  7. Rap1r6: 8, CGCGGCCACAACAA at 4395, CAAATCCGGGAACC at 3344, CACACCTTGTCCCT at 3171, CCCAGCTGTTGAAT at 2887, CAGAGCATGTGAAT at 2333, CCCACCCAGGGCAC at 966, CCCACCAAGGACAT at 792, CGGGCCAATGGAAA at 745.
  8. Rap1r7: 3, CGCAGCTAGTGCAT at 4289, CAGACCATCTAAAA at 1275, CGGACCCGGGACAA at 61.
  9. Rap1r8: 2, CCAGCCAGTTCACT at 2796, CGCGTCCACTGAAC at 1582.
  10. Rap1r9: 5, CCGACCTGGGAATT at 4201, CACGCCTATGAACA at 3747, CGGGGCTATGGACT at 2865, CCAAGCCTGAGATT at 2327, CAAGGCTATTCACT at 648.
  11. Rap1r0ci: 2, TGTTTGAAGGTCGG at 4188, AATGCCATGGTTCG at 781.
  12. Rap1r1ci: 2, TATTCATGGCCTTG at 2005, AGGCCACTGGTTTG at 923.
  13. Rap1r2ci: 3, GAGCACAAGGCCGG at 4095, TTGGCATAGCTTGG at 622, GGGGCACGGCTTTG at 551.
  14. Rap1r3ci: 3, GAGGTAAGGGTGTG at 2010, AGGGCACTGGTCGG at 1888, TGGTTCTGGATGCG at 1690.
  15. Rap1r4ci: 5, GGGCAACGGACCGG at 4237, GTGCCGAGGATGTG at 4072, GAGCAAATGGTCCG at 1814, GTTTAATTGGCGGG at 712, TATCACTTGATTGG at 651.
  16. Rap1r5ci: 8, AATTTGTGGCTCGG at 3886, TGTTAATTGCTCGG at 3572, ATTGCCTTGCCGCG at 3324, AGTTAGTTGGTTTG at 3270, GAGCAGTGGGCTGG at 3164, AATTCGTTGCTTGG at 2998, GTTTTACGGACGGG at 2083, ATGTAACAGCCCCG at 985.
  17. Rap1r6ci: 4, TTTTAACGGGTCCG at 2787, GGGGCCTAGACCCG at 1601, GGTTCGTGGCCGCG at 1280, TATGAATGGCTTTG at 255.
  18. Rap1r7ci: 8, ATGTTGCAGATTGG at 4180, GGGGACAGGGCTTG at 3723, ATGGCGCTGGTGGG at 3398, GGTCTGTTGCCGTG at 3131, AGGTAAAGGGTTCG at 2380, GAGTCCAGGCCGTG at 2231, GAGCCCCGGGTTTG at 1847, GTGTTCCAGACGGG at 129.
  19. Rap1r8ci: 6, TTGTAAATGCTTCG at 2508, AGGTAGCGGCCTTG at 2032, TAGCCAATGACTCG at 1135, GGTGAGATGGTGTG at 536, AATCTCCAGGTGCG at 294, TGGTTATGGGTGGG at 99.
  20. Rap1r9ci: 6, ATTTCCCAGGCGGG at 2135, GGTTACCGGACTGG at 1712, TTTTAACTGCCTTG at 846, ATTTACTGGCCCGG at 632, TATTTACTGGCCCG at 631, ATTTTATAGCCGGG at 168.

Rap1r UTRs

Main article: UTR promoter gene transcriptions
  1. Rap1r0: CAAGGCCGTTCAAA at 4165, CAAGTCAAGACCTT at 4050, CCAGGCTGTGGCTC at 2846.
  2. Rap1r4: CGAACCAAGTCCTT at 3972, CCGACCTATAAACT at 3687, CGGGCCTAGGAACC at 3170.
  3. Rap1r6: CGCGGCCACAACAA at 4395, CAAATCCGGGAACC at 3344, CACACCTTGTCCCT at 3171, CCCAGCTGTTGAAT at 2887.
  1. Rap1r0ci: TGTTTGAAGGTCGG at 4188.
  2. Rap1r2ci: GAGCACAAGGCCGG at 4095.
  3. Rap1r4ci: GGGCAACGGACCGG at 4237, GTGCCGAGGATGTG at 4072.

Rap1r core promoters

Main article: Core promoter gene transcriptions
  1. Rap1r0: CCAGGCTGTGGCTC at 2846.
  1. Rap1r1: CGAGCCAAGGACCC at 4467.
  2. Rap1r7: CGCAGCTAGTGCAT at 4289.

Rap1r proximal promoters

Main article: Proximal promoter gene transcriptions
  1. Rap1r0: CACGTCCTCACCAT at 2601.
  2. Rap1r8: CCAGCCAGTTCACT at 2796.
  3. Rap1r6ci: TTTTAACGGGTCCG at 2787.
  1. Rap1r1: CCGATCCTTGGCCC at 4087.
  2. Rap1r5: CCAATCCTGAAAAA at 4165.
  3. Rap1r9: CCGACCTGGGAATT at 4201.
  4. Rap1r7ci: ATGTTGCAGATTGG at 4180.

Rap1r distal promoters

Main article: Distal promoter gene transcriptions
  1. Rap1r0: CAAACCAGTGAACT at 1331, CCAAGCTGGAACTA at 1303, CCAGGCTGGGCATC at 1255, CCGGGCTGGGAAAC at 831.
  2. Rap1r2: CGAAGCCTTACACA at 509.
  3. Rap1r4: CGAGCCCATTGCCC at 1846, CCAATCTTGTCCAC at 1770.
  4. Rap1r6: CAGAGCATGTGAAT at 2333, CCCACCCAGGGCAC at 966, CCCACCAAGGACAT at 792, CGGGCCAATGGAAA at 745.
  5. Rap1r8: CGCGTCCACTGAAC at 1582.
  6. Rap1r0ci: AATGCCATGGTTCG at 781.
  7. Rap1r2ci: TTGGCATAGCTTGG at 622, GGGGCACGGCTTTG at 551.
  8. Rap1r4ci: GAGCAAATGGTCCG at 1814, GTTTAATTGGCGGG at 712, TATCACTTGATTGG at 651.
  9. Rap1r6ci: GGGGCCTAGACCCG at 1601, GGTTCGTGGCCGCG at 1280, TATGAATGGCTTTG at 255.
  10. Rap1r8ci: TTGTAAATGCTTCG at 2508, AGGTAGCGGCCTTG at 2032, TAGCCAATGACTCG at 1135, GGTGAGATGGTGTG at 536, AATCTCCAGGTGCG at 294, TGGTTATGGGTGGG at 99.
  1. Rap1r1: CACGTCCTTAACTA at 3437, CGGGTCAATGCCTT at 2784, CCGACCCAGTAAAT at 2362, CCGACCATCGCAAA at 1774, CGAAGCATCAAAAA at 1440, CGGGTCTACGAACA at 611, CCAACCTTTACACT at 528.
  2. Rap1r3: CAAATCCTCAGATA at 2773, CCGGTCCAGGGCCA at 1592, CCAGCCCTCTGAAC at 1434.
  3. Rap1r5: CCCACCAGGGCACC at 3507, CGAATCCGGGCAAT at 3457, CAGGCCTTTAAAAT at 2372, CACACCTTCGCCTC at 1650, CCCGCCAGCTCCAC at 800, CGAAGCCTTGCCCT at 481, CCCGCCCTTGGCCC at 357.
  4. Rap1r7: CAGACCATCTAAAA at 1275, CGGACCCGGGACAA at 61.
  5. Rap1r9: CACGCCTATGAACA at 3747, CGGGGCTATGGACT at 2865, CCAAGCCTGAGATT at 2327, CAAGGCTATTCACT at 648.
  6. Rap1r1ci: TATTCATGGCCTTG at 2005, AGGCCACTGGTTTG at 923.
  7. Rap1r3ci: GAGGTAAGGGTGTG at 2010, AGGGCACTGGTCGG at 1888, TGGTTCTGGATGCG at 1690.
  8. Rap1r5ci: AATTTGTGGCTCGG at 3886, TGTTAATTGCTCGG at 3572, ATTGCCTTGCCGCG at 3324, AGTTAGTTGGTTTG at 3270, GAGCAGTGGGCTGG at 3164, AATTCGTTGCTTGG at 2998, GTTTTACGGACGGG at 2083, ATGTAACAGCCCCG at 985.
  9. Rap1r7ci: GGGGACAGGGCTTG at 3723, ATGGCGCTGGTGGG at 3398, GGTCTGTTGCCGTG at 3131, AGGTAAAGGGTTCG at 2380, GAGTCCAGGCCGTG at 2231, GAGCCCCGGGTTTG at 1847, GTGTTCCAGACGGG at 129.
  10. Rap1r9ci: ATTTCCCAGGCGGG at 2135, GGTTACCGGACTGG at 1712, TTTTAACTGCCTTG at 846, ATTTACTGGCCCGG at 632, TATTTACTGGCCCG at 631, ATTTTATAGCCGGG at 168.

Acknowledgements

The content on this page was first contributed by: Henry A. Hoff.

See also

References

  1. ↑ 1.0 1.1 1.2 1.3 Matthew J. Rossi, William K.M. Lai and B. Franklin Pugh (21 March 2018). "Genome-wide determinants of sequence-specific DNA binding of general regulatory factors". Genome Research. 28: 497–508. doi:10.1101/gr.229518.117. PMID 29563167. Retrieved 31 August 2020.

External links

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