Q element gene transcriptions: Difference between revisions
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# Positive strand, negative direction: AGGTCA at 4307. | # Positive strand, negative direction: AGGTCA at 4307. | ||
===QE core promoters=== | ===QE positive direction (4445-4265) core promoters=== | ||
Negative strand, positive direction: AGGTCA at 4269. | # Negative strand, positive direction: AGGTCA at 4269. | ||
===QE distal promoters=== | ===QE distal promoters=== | ||
Revision as of 06:18, 18 January 2023
Associate Editor(s)-in-Chief: Henry A. Hoff
"The basal regulatory elements identified include a putative TATA-box (−30/−24) for RNA polymerase binding and a CAAT box (−64/−61; [...]). Several putative floral expression-related cis-elements identified included a putative 6-nucleotide Q element (−770/−665), three GTGA boxes (−372/−369, −209/−206 and −164/−161) and four putative highly-conserved POLLEN1 boxes (−737/−733, −711/−707, −150/−146 and −36/−32; [...])."[1]
Human genes
Consensus sequences
The consensus sequence for a Q element is 3'-AGGTCA-5'.[1]
QE samplings
Copying the apparent consensus sequence for the QE (AGGTCA) and putting it in "⌘F" finds two located between ZSCAN22 or three between ZNF497 and A1BG as can be found by the computer programs.
For the Basic programs testing consensus sequence AGGTCA (starting with SuccessablesQE.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:
- negative strand, negative direction, looking for AGGTCA, 2, AGGTCA at 1532, AGGTCA at 1352.
- positive strand, negative direction, looking for AGGTCA, 7, AGGTCA at 4307, AGGTCA at 2585, AGGTCA at 2248, AGGTCA at 712, AGGTCA at 576, AGGTCA at 568, AGGTCA at 439.
- positive strand, positive direction, looking for AGGTCA, 0.
- negative strand, positive direction, looking for AGGTCA, 3, AGGTCA at 4269, AGGTCA at 2220, AGGTCA at 153.
- complement, negative strand, negative direction, looking for TCCAGT, 7, TCCAGT at 4307, TCCAGT at 2585, TCCAGT at 2248, TCCAGT at 712, TCCAGT at 576, TCCAGT at 568, TCCAGT at 439.
- complement, positive strand, negative direction, looking for TCCAGT, 2, TCCAGT at 1532, TCCAGT at 1352.
- complement, positive strand, positive direction, looking for TCCAGT, 3, TCCAGT at 4269, TCCAGT at 2220, TCCAGT at 153.
- complement, negative strand, positive direction, looking for TCCAGT, 0.
- inverse complement, negative strand, negative direction, looking for TGACCT, 0.
- inverse complement, positive strand, negative direction, looking for TGACCT, 0.
- inverse complement, positive strand, positive direction, looking for TGACCT, 0.
- inverse complement, negative strand, positive direction, looking for TGACCT, 2, TGACCT at 4019, TGACCT at 3785.
- inverse negative strand, negative direction, looking for ACTGGA, 0.
- inverse positive strand, negative direction, looking for ACTGGA, 0.
- inverse positive strand, positive direction, looking for ACTGGA, 2, ACTGGA at 4019, ACTGGA at 3785.
- inverse negative strand, positive direction, looking for ACTGGA, 0.
QE (4560-2846) UTRs
- Positive strand, negative direction: AGGTCA at 4307.
QE positive direction (4445-4265) core promoters
- Negative strand, positive direction: AGGTCA at 4269.
QE distal promoters
Negative strand, negative direction: AGGTCA at 1532, AGGTCA at 1352.
Positive strand, negative direction: AGGTCA at 2585, AGGTCA at 2248, AGGTCA at 712, AGGTCA at 576, AGGTCA at 568, AGGTCA at 439.
Negative strand, positive direction: TGACCT at 4019, TGACCT at 3785, AGGTCA at 2220, AGGTCA at 153.
See also
References
- ↑ 1.0 1.1 Zi-Wei Ye, Jie Xu, Jianxin Shi, Dabing Zhang and Mee-Len Chye (January 2017). "Kelch-motif containing acyl-CoA binding proteins AtACBP4 and AtACBP5 are differentially expressed and function in floral lipid metabolism" (PDF). Plant Molecular Biology. 93: 209–225. doi:10.1007/s11103-016-0557-5. PMID 27826761. Retrieved 7 May 2020.