Middle sporulation element gene transcriptions

Associate Editor(s)-in-Chief: Henry A. Hoff

Ndt80 is a meiosis-specific transcription factor required for successful completion of meiosis and spore formation.^[1] The DNA-binding domain of Ndt80 has been isolated, and the structure reveals that this protein is a member of the Ig-fold family of transcription factors.^[2] Ndt80 also competes with the repressor SUM1 for binding to promoters containing MSEs.^[3]

Human genes

Interactions

Consensus sequences

Of the midsporulation element (MSE), "a minimal element, CRCAAA(A/T), is sufficient for sporulation specificity."^[4]

"These genomic sequences were analysed for the presence of [...] middle sporulation elements (MSE) motif (5'-ACACAAA-3') using the NCBI BLAST tool."^[5]

Middle sporulation elements (MSE) motif has the consensus sequence 5'-ACACAAA-3'.^[5]

MSE (Branco) samplings

Copying apparent core consensus sequences for the MSEs of ACACAAA and putting it in "⌘F" finds none located between ZSCAN22 and none between ZNF497 and A1BG as can be found by the computer programs.

For the Basic programs testing consensus sequence ACACAAA (starting with SuccessablesMSEB.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:

negative strand, negative direction, looking for ACACAAA, 0.
positive strand, negative direction, looking for ACACAAA, 0.
positive strand, positive direction, looking for ACACAAA, 0.
negative strand, positive direction, looking for ACACAAA, 0.
complement, negative strand, negative direction, looking for TGTGTTT, 0.
complement, positive strand, negative direction, looking for TGTGTTT, 0.
complement, positive strand, positive direction, looking for TGTGTTT, 0.
complement, negative strand, positive direction, looking for TGTGTTT, 0.
inverse complement, negative strand, negative direction, looking for TTTGTGT, 2, TTTGTGT at 3513, TTTGTGT at 1541.
inverse complement, positive strand, negative direction, looking for TTTGTGT, 0.
inverse complement, positive strand, positive direction, looking for TTTGTGT, 1, TTTGTGT at 2835.
inverse complement, negative strand, positive direction, looking for TTTGTGT, 0.
inverse negative strand, negative direction, looking for AAACACA, 0.
inverse positive strand, negative direction, looking for AAACACA, 2, AAACACA at 3513, AAACACA at 1541.
inverse positive strand, positive direction, looking for AAACACA, 0.
inverse negative strand, positive direction, looking for AAACACA, 1, AAACACA at 2835.

MSE (Branco) UTR gene transcriptions

Negative strand: TTTGTGT at 3513

MSE (Branco) distal promoters

Negative strand: TTTGTGT at 1541

Positive strand: TTTGTGT at 2835

MSE (Xu) samplings

Copying a responsive elements consensus sequence C(A/G)CAAA(A/T) and putting the sequence in "⌘F" finds none between ZNF497 and A1BG or none between ZSCAN22 and A1BG as can be found by the computer programs.

For the Basic programs testing consensus sequence C(A/G)CAAA(A/T) (starting with SuccessablesMSEX.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:

negative strand, negative direction, looking for C(A/G)CAAA(A/T), 0.
positive strand, negative direction, looking for C(A/G)CAAA(A/T), 2, CACAAAA at 3767, CGCAAAA at 164.
positive strand, positive direction, looking for C(A/G)CAAA(A/T), 0.
negative strand, positive direction, looking for C(A/G)CAAA(A/T), 0.
complement, negative strand, negative direction, looking for G(C/T)GTTT(A/T), 2, GTGTTTT at 3767, GCGGGGG at 164.
complement, positive strand, negative direction, looking for G(C/T)GTTT(A/T), 0.
complement, positive strand, positive direction, looking for G(C/T)GTTT(A/T), 0.
complement, negative strand, positive direction, looking for G(C/T)GTTT(A/T), 0.
inverse complement, negative strand, negative direction, looking for (A/T)TTTG(C/T)G, 1, TTTTGTG at 3512.
inverse complement, positive strand, negative direction, looking for (A/T)TTTG(C/T)G, 0.
inverse complement, positive strand, positive direction, looking for (A/T)TTTG(C/T)G, 0.
inverse complement, negative strand, positive direction, looking for (A/T)TTTG(C/T)G, 0.
inverse negative strand, negative direction, looking for (A/T)AAAC(A/G)C, 0.
inverse positive strand, negative direction, looking for (A/T)AAAC(A/G)C, 1, AAAACAC at 3512.
inverse positive strand, positive direction, looking for (A/T)AAAC(A/G)C, 0.
inverse negative strand, positive direction, looking for (A/T)AAAC(A/G)C, 0.

MSE (Xu) UTR gene transcriptions

Negative strand: TTTTGTG at 3512

Positive strand: CACAAAA at 3767

AAA distal promoters

Positive strand: CGCAAAA at 164

Acknowledgements

The content on this page was first contributed by: Henry A. Hoff.

References

↑ Xu L, Ajimura M, Padmore R, Klein C, Kleckner N (December 1995). "NDT80, a meiosis-specific gene required for exit from pachytene in Saccharomyces cerevisiae". Molecular and Cellular Biology. 15 (12): 6572–81. doi:10.1128/MCB.15.12.6572. PMC 230910. PMID 8524222.
↑ Lamoureux JS, Stuart D, Tsang R, Wu C, Glover JN (November 2002). "Structure of the sporulation-specific transcription factor Ndt80 bound to DNA". The EMBO Journal. 21 (21): 5721–32. doi:10.1093/emboj/cdf572. PMC 131069. PMID 12411490.
↑ Hendrickson WA, Ward KB (October 1975). "Atomic models for the polypeptide backbones of myohemerythrin and hemerythrin". Biochemical and Biophysical Research Communications. 66 (4): 1349–56. doi:10.1016/0006-291x(75)90508-2. PMID 5.
↑ Nesrin O, Melissa J S, Hazel E D, and Ian W D (March 1997). "Regulation of Gene Expression during Meiosis in Saccharomyces cerevisiae: SPR3 Is Controlled by both ABFI and a New Sporulation Control Element". Molecular and Cellular Biology. 17 (3): 1152–9. doi:10.1128/MCB.17.3.1152. PMC 231840. PMID 9032242. Vancouver style error: initials (help)
↑ ^5.0 ^5.1 J. Branco, M. Ola, R. M. Silva, E. Fonseca, N. C. Gomes, C. Martins-Cruz, A. P. Silva, A. Silva-Dias, C. Pina-Vaz, C. Erraught, L. Brennan, A. G. Rodrigues, G. Butler and I. M. Miranda (August 2017). "Impact of ERG3 mutations and expression of ergosterol genes controlled by UPC2 and NDT80 in Candida parapsilosis azole resistance". Clinical Microbiology and Infection. 23 (8): 575.e1–575.e8. doi:10.1016/j.cmi.2017.02.002. PMID 28196695. Retrieved 5 September 2020.

External links

[Xu-1] Xu L, Ajimura M, Padmore R, Klein C, Kleckner N (December 1995). "NDT80, a meiosis-specific gene required for exit from pachytene in Saccharomyces cerevisiae". Molecular and Cellular Biology. 15 (12): 6572–81. doi:10.1128/MCB.15.12.6572. PMC 230910. PMID 8524222.

[Lamoureux-2] Lamoureux JS, Stuart D, Tsang R, Wu C, Glover JN (November 2002). "Structure of the sporulation-specific transcription factor Ndt80 bound to DNA". The EMBO Journal. 21 (21): 5721–32. doi:10.1093/emboj/cdf572. PMC 131069. PMID 12411490.

[Hendrickson-3] Hendrickson WA, Ward KB (October 1975). "Atomic models for the polypeptide backbones of myohemerythrin and hemerythrin". Biochemical and Biophysical Research Communications. 66 (4): 1349–56. doi:10.1016/0006-291x(75)90508-2. PMID 5.

[Ozsarac-4] Nesrin O, Melissa J S, Hazel E D, and Ian W D (March 1997). "Regulation of Gene Expression during Meiosis in Saccharomyces cerevisiae: SPR3 Is Controlled by both ABFI and a New Sporulation Control Element". Molecular and Cellular Biology. 17 (3): 1152–9. doi:10.1128/MCB.17.3.1152. PMC 231840. PMID 9032242. Vancouver style error: initials (help)

[Branco-5] 5.0 ^5.1 J. Branco, M. Ola, R. M. Silva, E. Fonseca, N. C. Gomes, C. Martins-Cruz, A. P. Silva, A. Silva-Dias, C. Pina-Vaz, C. Erraught, L. Brennan, A. G. Rodrigues, G. Butler and I. M. Miranda (August 2017). "Impact of ERG3 mutations and expression of ergosterol genes controlled by UPC2 and NDT80 in Candida parapsilosis azole resistance". Clinical Microbiology and Infection. 23 (8): 575.e1–575.e8. doi:10.1016/j.cmi.2017.02.002. PMID 28196695. Retrieved 5 September 2020.

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Middle sporulation element gene transcriptions

Contents

Human genes

Interactions

Consensus sequences

MSE (Branco) samplings

MSE (Branco) UTR gene transcriptions

MSE (Branco) distal promoters

MSE (Xu) samplings

MSE (Xu) UTR gene transcriptions

AAA distal promoters

Acknowledgements

See also

References

External links

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Middle sporulation element gene transcriptions

Human genes

Interactions

Consensus sequences

MSE (Branco) samplings

MSE (Branco) UTR gene transcriptions

MSE (Branco) distal promoters

MSE (Xu) samplings

MSE (Xu) UTR gene transcriptions

AAA distal promoters

Acknowledgements

See also

References

External links

Navigation menu

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