Genes on 19q13.43

Associate Editor(s)-in-Chief: Henry A. Hoff

There are some 154 genes on 19q13.43. Many do not contain or transcribe immunoglobulins.

Human genes

Gene ID: 1 see Complex locus A1BG and ZNF497.

Gene ID: 2282 is FKBP1AP1 FKBP prolyl isomerase 1A pseudogene 1.

1. NR_024162.1 RNA Sequence, ncRNA.

Gene ID: 5178 is PEG3 paternally expressed 3: "In human, ZIM2 and PEG3 are treated as two distinct genes though they share multiple 5' exons and a common promoter and both genes are paternally expressed (PMID:15203203). Alternative splicing events connect their shared 5' exons either with the remaining 4 exons unique to ZIM2, or with the remaining 2 exons unique to PEG3. In contrast, in other mammals ZIM2 does not undergo imprinting and, in mouse, cow, and likely other mammals as well, the ZIM2 and PEG3 genes do not share exons. Human PEG3 protein belongs to the Kruppel C2H2-type zinc finger protein family. PEG3 may play a role in cell proliferation and p53-mediated apoptosis. PEG3 has also shown tumor suppressor activity and tumorigenesis in glioma and ovarian cells. Alternative splicing of this PEG3 gene results in multiple transcript variants encoding distinct isoforms."

1. NP_006201.1 paternally-expressed gene 3 protein isoform 1: "Transcript Variant: This variant (1) encodes isoform 1. Variants 1 and 2 both encode the same isoform (1)." Conserved Domains (5) summary: PHA00666 Location: 1421 → 1501 PHA00666; putative protease, sd00017 Location: 507 → 527 ZF_C2H2; C2H2 Zn finger [structural motif], pfam00096 Location: 969 → 991 zf-C2H2; Zinc finger, C2H2 type, pfam02023 Location: 42 → 124 SCAN; SCAN domain and pfam08648 Location: 141 → 237 DUF1777; Protein of unknown function (DUF1777).

Gene ID: 6193 is RPS5 ribosomal protein S5: "Ribosomes, the organelles that catalyze protein synthesis, consist of a small 40S subunit and a large 60S subunit. Together these subunits are composed of 4 RNA species and approximately 80 structurally distinct proteins. This gene encodes a ribosomal protein that is a component of the 40S subunit. The protein belongs to the S7P family of ribosomal proteins. It is located in the cytoplasm. Variable expression of this gene in colorectal cancers compared to adjacent normal tissues has been observed, although no correlation between the level of expression and the severity of the disease has been found. As is typical for genes encoding ribosomal proteins, there are multiple processed pseudogenes of this gene dispersed through the genome."

1. NP_001000.2 40S ribosomal protein S5, Conserved Domains (1) summary: cd14867 Location: 18 → 204 uS7_Eukaryote; Eukaryota homolog of Ribosomal Protein S7.

Gene ID: 6795 is AURKC aurora kinase C: "This gene encodes a member of the Aurora subfamily of serine/threonine protein kinases. The encoded protein is a chromosomal passenger protein that forms complexes with Aurora-B and inner centromere proteins and may play a role in organizing microtubules in relation to centrosome/spindle function during mitosis. This gene is overexpressed in several cancer cell lines, suggesting an involvement in oncogenic signal transduction. Alternative splicing results in multiple transcript variants."

1. NP_001015878.1 aurora kinase C isoform 1: "Transcript Variant: This variant (1) encodes the longest isoform (1)." Conserved Domains (2) summary: smart00220 Location: 43 → 293 S_TKc; Serine/Threonine protein kinases, catalytic domain and cd14117 Location: 36 → 305 STKc_Aurora-B_like; Catalytic domain of the Serine/Threonine kinase, Aurora-B kinase and similar proteins.
2. NP_001015879.1 aurora kinase C isoform 2: "Transcript Variant: This variant (2), also known as Aurora C-SV, uses an alternate splice site at the 5' end of the first intron and an alternate upstream translation initiation site, compared to variant 1. The encoded protein (isoform 2) contains a shorter and distinct N-terminus, compared to isoform 1."
3. NP_003151.2 aurora kinase C isoform 3: "Transcript Variant: This variant (3) uses an alternate splice site at the 5' end of the first intron and an alternate downstream translation initiation site, compared to variant 1. The encoded protein (isoform 3) has a shorter N-terminus, compared to isoform 1."

Gene ID: 7554 is ZNF8 zinc finger protein 8.

1. NP_066575.2 zinc finger protein 8, Conserved Domains (4) summary: smart00349 Location: 25 → 85 KRAB; krueppel associated box, COG5048 Location: 167 → 404 COG5048; FOG: Zn-finger [General function prediction only], sd00017 Location: 259 → 279 ZF_C2H2; C2H2 Zn finger [structural motif] and pfam00096 Location: 467 → 489 zf-C2H2; Zinc finger, C2H2 type.

Gene ID: 7565 is ZNF17 zinc finger protein 17.

1. NP_001317546.1 zinc finger protein 17 isoform 1, Conserved Domains (4) summary: COG5048 Location: 246 → 658 COG5048; FOG: Zn-finger [General function prediction only], sd00017 Location: 222 → 242 ZF_C2H2; C2H2 Zn finger [structural motif], pfam01352 Location: 12 → 49 KRAB; KRAB box and pfam13465 Location: 487 → 511 zf-H2C2_2; Zinc-finger double domain.

Gene ID: 7593 is MZF1 myeloid zinc finger 1.

1. NP_001253962.1 myeloid zinc finger 1 isoform 2: "Transcript Variant: This variant (3) differs in the 5' UTR and uses an alternate splice site in the 3' coding region, which results in a frameshift, compared to variant 1. The encoded isoform (2) is shorter and has a distinct C-terminus, compared to isoform 1." Conserved Domains (2) summary: smart00431 Location: 40 → 152 SCAN; leucine rich region and pfam02023 Location: 40 → 128 SCAN; SCAN domain.

Gene ID: 7691 is ZNF132 zinc finger protein 132.

1. NP_003424.3 zinc finger protein 132, Conserved Domains (3) summary: COG5048 Location: 105 → 528 COG5048; FOG: Zn-finger [General function prediction only], sd00017 Location: 433 → 453 ZF_C2H2; C2H2 Zn finger [structural motif] and pfam01352 Location: 37 → 78 KRAB; KRAB box.

Gene ID: 7693 is ZNF134 zinc finger protein 134.

1. NP_003426.3 zinc finger protein 134, Conserved Domains (2) summary: COG5048 Location: 202 → 358 COG5048; FOG: Zn-finger [General function prediction only] and sd00017 Location: 178 → 198 ZF_C2H2; C2H2 Zn finger [structural motif].

Gene ID: 7694 is ZNF135 zinc finger protein 135.

1. NP_001157999.1 zinc finger protein 135 isoform 3: "Transcript Variant: This variant (3) differs in the 3' UTR and 3' coding region, compared to variant 1. It encodes isoform 3 which has a shorter and distinct C-terminus compared to isoform 1." Conserved Domains (2) summary: smart00349 Location: 26 → 85 KRAB; krueppel associated box and pfam01352 Location: 26 → 65 KRAB; KRAB box.

Gene ID: 7710 is ZNF154 zinc finger protein 154: "This gene encodes a protein that belongs to the zinc finger Kruppel family of transcriptional regulators, whose members are thought to function in normal and abnormal cell growth and differentiation. Hypermethylation of this gene is associated with the recurrence of non muscle invasive bladder cancer. Alternative splicing results in multiple transcript variants."

1. NP_001078853.1 zinc finger protein 154: "Transcript Variant: This variant (1) represents the longest transcript and encodes the functional protein." Conserved Domains (5) summary: smart00349 Location: 14 → 62 KRAB; krueppel associated box, COG5048 Location: 139 → 436 COG5048; FOG: Zn-finger [General function prediction only], sd00017 Location: 359 → 379 ZF_C2H2; C2H2 Zn finger [structural motif], pfam01352 Location: 14 → 53 KRAB; KRAB box and pfam13465 Location: 371 → 396 zf-H2C2_2; Zinc-finger double domain.

Gene ID: 9040 is UBE2M ubiquitin conjugating enzyme E2 M: "The modification of proteins with ubiquitin is an important cellular mechanism for targeting abnormal or short-lived proteins for degradation. Ubiquitination involves at least three classes of enzymes: ubiquitin-activating enzymes, or E1s, ubiquitin-conjugating enzymes, or E2s, and ubiquitin-protein ligases, or E3s. This gene encodes a member of the E2 ubiquitin-conjugating enzyme family. The encoded protein is linked with a ubiquitin-like protein, NEDD8, which can be conjugated to cellular proteins, such as Cdc53/culin."

1. NP_003960.1 NEDD8-conjugating enzyme Ubc12, Conserved Domains (1) summary: pfam00179 Location: 33 → 168 UQ_con; Ubiquitin-conjugating enzyme.

Gene ID: 9422 is ZNF264 zinc finger protein 264: "This gene encodes a zinc finger protein and belongs to the krueppel C2H2-type zinc-finger protein family. Zinc finger proteins are often localized in the nucleus, bind nucleic acids, and regulate transcription."

1. NP_003408.1 zinc finger protein 264, Conserved Domains (6) summary: smart00349 Location: 14 → 74 KRAB; krueppel associated box, COG5048 Location: 184 → 568 COG5048; FOG: Zn-finger [General function prediction only], sd00017 Location: 485 → 505 ZF_C2H2; C2H2 Zn finger [structural motif], pfam00096 Location: 399 → 421 zf-C2H2; Zinc finger, C2H2 type, pfam01352 Location: 14 → 53 KRAB; KRAB box and pfam13465 Location: 413 → 438 zf-H2C2_2; Zinc-finger double domain.

Gene ID: 10155 is TRIM28 tripartite motif containing 28: "The protein encoded by this gene mediates transcriptional control by interaction with the Kruppel-associated box repression domain found in many transcription factors. The protein localizes to the nucleus and is thought to associate with specific chromatin regions. The protein is a member of the tripartite motif family. This tripartite motif includes three zinc-binding domains, a RING, a B-box type 1 and a B-box type 2, and a coiled-coil region."

1. NP_005753.1 transcription intermediary factor 1-beta, Conserved Domains (7) summary: cd05502 Location: 696 → 802 Bromo_tif1_like; Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine, smart00502 Location: 252 → 378 BBC; B-Box C-terminal domain, smart00336 Location: 148 → 184 BBOX; B-Box-type zinc finger, cd00021 Location: 207 → 245 BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction, cd15623 Location: 627 → 669 PHD_TIF1beta; PHD finger found in transcription intermediary factor 1-beta (TIF1-beta), cd16765 Location: 62 → 124 RING-HC_TIF1beta; RING finger, HC subclass, found in transcription inknown asiary factor 1-beta (TIF1-beta) and cl25756 Location: 525 → 620 BASP1; Brain acid soluble protein 1 (BASP1 protein).

Gene ID: 10172 is ZNF256 zinc finger protein 256.

1. NP_001362332.1 zinc finger protein 256 isoform 2 variant 2.
2. NP_005764.2 zinc finger protein 256 isoform 1 variant 1, Conserved Domains (5) summary: smart00349 Location: 14 → 54 KRAB; krueppel associated box, COG5048 Location: 237 → 612 COG5048; FOG: Zn-finger [General function prediction only], sd00017 Location: 521 → 541 ZF_C2H2; C2H2 Zn finger [structural motif], pfam01352 Location: 14 → 53 KRAB; KRAB box and pfam13465 Location: 309 → 334 zf-H2C2_2; Zinc-finger double domain.

Gene ID: 10520 is ZNF211 zinc finger protein 211: "This gene encodes a protein containing a Kruppel-associated box domain and multiple zinc finger domains. This protein may play a role in developmental processes. Alternative splicing results in multiple transcript variants."

1. NP_001252526.1 zinc finger protein 211 isoform 3: "Transcript Variant: This variant (3) contains an alternate exon in the coding region, but maintains the reading frame, compared to variant 1. The encoded isoform (3) is longer than isoform 1." Conserved Domains (6) summary: smart00349 Location: 46 → 106 KRAB; krueppel associated box, COG5048 Location: 244 → 615 COG5048; FOG: Zn-finger [General function prediction only], sd00017 Location: 520 → 540 ZF_C2H2; C2H2 Zn finger [structural motif], pfam00096 Location: 518 → 540 zf-C2H2; Zinc finger, C2H2 type, pfam01352 Location: 46 → 85 KRAB; KRAB box and pfam13465 Location: 420 → 445 zf-H2C2_2; Zinc-finger double domain.

Gene ID: 10597 is TRAPPC2B trafficking protein particle complex 2B.

1. NP_001342133.1 trafficking protein particle complex subunit 2B, Conserved Domains (1) summary: cd14825 Location: 4 → 138 TRAPPC2_sedlin; Trafficking protein particle complex subunit 2.

Gene ID: 10782 is ZNF274 zinc finger protein 274: "This gene encodes a zinc finger protein containing five C2H2-type zinc finger domains, one or two Kruppel-associated box A (KRAB A) domains, and a leucine-rich domain. The encoded protein has been suggested to be a transcriptional repressor. It localizes predominantly to the nucleolus. Alternatively spliced transcript variants encoding different isoforms exist. These variants utilize alternative polyadenylation signals."

1. NP_001265663.1 neurotrophin receptor-interacting factor homolog isoform d: "Transcript Variant: This variant (ZNF274d) has an additional segment in the 5' region, which results in a downstream translation start codon, compared to variant ZNF274c. The resulting isoform (d) has a shorter N-terminus and contains only one KRAB A domain, compared to isoform c." Conserved Domains (8) summary: smart00431 Location: 115 → 227 SCAN; leucine rich region, smart00349 Location: 245 → 285 KRAB; krueppel associated box, COG5048 Location: 347 → 599 COG5048; FOG: Zn-finger [General function prediction only], sd00017 Location: 523 → 543 ZF_C2H2; C2H2 Zn finger [structural motif], pfam00096 Location: 549 → 571 zf-C2H2; Zinc finger, C2H2 type, pfam01352 Location: 245 → 284 KRAB; KRAB box, pfam02023 Location: 115 → 203 SCAN; SCAN domain and pfam13465 Location: 563 → 588 zf-H2C2_2; Zinc-finger double domain.

Gene ID: 10794 is ZNF460 zinc finger protein 460: "Zinc finger proteins, such as ZNF272, interact with nucleic acids and have diverse functions. The zinc finger domain is a conserved amino acid sequence motif containing 2 specifically positioned cysteines and 2 histidines that are involved in coordinating zinc. Kruppel-related proteins form 1 family of zinc finger proteins. See ZFP93 (MIM 604749) for additional information on zinc finger proteins."

1. NP_006626.3 zinc finger protein 460 isoform 1, Conserved Domains (3) summary: COG5048 Location: 222 → 552 COG5048; FOG: Zn-finger [General function prediction only], sd00017 Location: 198 → 218 ZF_C2H2; C2H2 Zn finger [structural motif] and pfam01352 Location: 12 → 53 KRAB; KRAB box.

Gene ID: 10998 is SLC27A5 solute carrier family 27 member 5: "The protein encoded by this gene is an isozyme of very long-chain acyl-CoA synthetase (VLCS). It is capable of activating very long-chain fatty-acids containing 24- and 26-carbons. It is expressed in liver and associated with endoplasmic reticulum but not with peroxisomes. Its primary role is in fatty acid elongation or complex lipid synthesis rather than in degradation. This gene has a mouse ortholog."

1. NP_001308125.1 bile acyl-CoA synthetase isoform 2 precursor variant 2, Conserved Domains (1) summary: cl17068 Location: 146 → 596 AFD_class_I; Adenylate forming domain, Class I superfamily.
2. NP_036386.1 bile acyl-CoA synthetase isoform 1 precursor variant 1, Conserved Domains (2) summary: cd05938 Location: 140 → 680 hsFATP2a_ACSVL_like; Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins and PRK08279 Location: 87 → 690 PRK08279; long-chain-acyl-CoA synthetase; Validated.
3. XP_011524666.1 bile acyl-CoA synthetase isoform X1, Conserved Domains (2) summary: pfam00501 Location: 120 → 558 AMP-binding; AMP-binding enzyme and cl17068 Location: 140 → 592 AFD_class_I; Adenylate forming domain, Class I superfamily.

Gene ID: 23619 is ZIM2 zinc finger imprinted 2: "In human, ZIM2 and PEG3 (GeneID:5178) are two distinct genes that share a set of 5' exons and have a common promoter, and both genes are paternally expressed. Alternative splicing events connect the shared exons either with the remaining 4 exons unique to ZIM2, or with the remaining 2 exons unique to PEG3. This is in contrast to mouse and cow, where ZIM2 and PEG3 genes do not share exons in common, and the imprinting status of ZIM2 is also not conserved amongst mammals. Additional 5' alternatively spliced transcripts encoding the same protein have been found for the human ZIM2 gene."

1. NP_001139798.1 zinc finger imprinted 2 isoform b: "Transcript Variant: This variant (2) contains an additional 5' non-coding exon, therefore, differs in the 5' UTR compared to variant 1. Variants 1-6 all encode the same isoform (b)." Conserved Domains (4) summary: smart00349 Location: 176 → 232 KRAB; krueppel associated box, sd00017 Location: 414 → 434 ZF_C2H2; C2H2 Zn finger [structural motif], pfam00096 Location: 466 → 488 zf-C2H2; Zinc finger, C2H2 type and pfam13465 Location: 342 → 365 zf-H2C2_2; Zinc-finger double domain.

Gene ID: 25799 is ZNF324 zinc finger protein 324.

1. NP_055162.1 zinc finger protein 324A, Conserved Domains (6) summary: smart00349 Location: 1 → 61 KRAB; krueppel associated box, COG5048 Location: 263 → 463 COG5048; FOG: Zn-finger [General function prediction only], sd00017 Location: 259 → 279 ZF_C2H2; C2H2 Zn finger [structural motif], pfam00096 Location:369 → 391 zf-C2H2; Zinc finger, C2H2 type, pfam01352 Location: 1 → 40 KRAB; KRAB box and pfam13465 Location: 271 → 296 zf-H2C2_2; Zinc-finger double domain.

Gene ID: 27243 is CHMP2A charged multivesicular body protein 2A: "CHMP2A belongs to the chromatin-modifying protein/charged multivesicular body protein (CHMP) family. These proteins are components of ESCRT-III (endosomal sorting complex required for transport III), a complex involved in degradation of surface receptor proteins and formation of endocytic multivesicular bodies (MVBs). Some CHMPs have both nuclear and cytoplasmic/vesicular distributions, and one such CHMP, CHMP1A (MIM 164010), is required for both MVB formation and regulation of cell cycle progression (Tsang et al., 2006 [PubMed 16730941])."

1. NP_055268.1 charged multivesicular body protein 2a: "Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1 and 2 encode the same protein." Conserved Domains (1) summary: pfam03357 Location: 17 → 185 Snf7; Snf7.

Gene ID: 27300 is ZNF544 zinc finger protein 544.

1. NP_001307696.1 zinc finger protein 544 isoform 1: "Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1 - 3 encode the same protein (isoform 1)." Conserved Domains (4) summary: smart00349 Location: 14 → 73 KRAB; krueppel associated box, COG5048 Location: 406 → 699 COG5048; FOG: Zn-finger [General function prediction only], sd00017 Location: 494 → 514 ZF_C2H2; C2H2 Zn finger [structural motif] and pfam13465 Location: 370 → 391 zf-H2C2_2; Zinc-finger double domain.
2. NP_001307698.1 zinc finger protein 544 isoform 1: "Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1. Variants 1 - 3 encode the same protein (isoform 1)."
3. NP_001307699.1 zinc finger protein 544 isoform 2: "Transcript Variant: This variant (4) differs in the 5' UTR and lacks an alternate in-frame exon in the coding region, compared to variant 1. It encodes isoform 2, which is shorter than isoform 1. Variants 4 - 6 encode the same protein (isoform 2)."
4. NP_001307700.1 zinc finger protein 544 isoform 2: "Transcript Variant: This variant (5) lacks an alternate in-frame exon in the coding region, compared to variant 1. It encodes isoform 2, which is shorter than isoform 1. Variants 4 - 6 encode the same protein (isoform 2)."
5. NP_001307702.1 zinc finger protein 544 isoform 2: "Transcript Variant: This variant (6) differs in the 5' UTR and lacks an alternate in-frame exon in the coding region, compared to variant 1. It encodes isoform 2, which is shorter than isoform 1. Variants 4 - 6 encode the same protein (isoform 2)."
6. NP_001307703.1 zinc finger protein 544 isoform 3: "Transcript Variant: This variant (7) differs in the 5' UTR and uses an alternate in-frame splice site in the 3' terminal exon, compared to variant 1. It encodes isoform 3, which is shorter than isoform 1."
7. NP_001307705.1 zinc finger protein 544 isoform 4: "Transcript Variant: This variant (8) has multiple differences compared to variant 1. These differences result in distinct 5' and 3' UTRs and cause translation initiation at an alternate start site, compared to variant 1. The encoded protein (isoform 4) is shorter and has distinct N- and C-termini, compared to isoform 1."
8. NP_001307706.1 zinc finger protein 544 isoform 5: "Transcript Variant: This variant (9) has multiple differences compared to variant 1. These differences result in distinct 5' and 3' UTRs and cause translation initiation at an alternate start site, compared to variant 1. The encoded protein (isoform 5) is shorter and has distinct N- and C-termini, compared to isoform 1."
9. NP_001307709.1 zinc finger protein 544 isoform 6: "Transcript Variant: This variant (10) contains an alternate 3' terminal exon, compared to variant 1. It encodes a shorter isoform (6) which has a distinct C-terminus, compared to isoform 1."
10. NP_001307710.1 zinc finger protein 544 isoform 7: "Transcript Variant: This variant (11) has multiple differences compared to variant 1. These differences result in distinct 5' and 3' UTRs and cause translation initiation at an alternate start site, compared to variant 1. The encoded protein (isoform 7) is shorter and has distinct N- and C-termini, compared to isoform 1."
11. NP_001307711.1 zinc finger protein 544 isoform 8: "Transcript Variant: This variant (12) contains an alternate 3' terminal exon, compared to variant 1. It encodes a shorter isoform (8) which has a distinct C-terminus, compared to isoform 1."
12. NP_001307712.1 zinc finger protein 544 isoform 9: "Transcript Variant: This variant (13) has multiple differences compared to variant 1. These differences result in distinct 5' and 3' UTRs and cause translation initiation at an alternate start site, compared to variant 1. The encoded protein (isoform 9) is shorter and has distinct N- and C-termini, compared to isoform 1."
13. NP_001307714.1 zinc finger protein 544 isoform 10: "Transcript Variant: This variant (14) uses alternate splice sites in the penultimate and 3' terminal exons, compared to variant 1. It encodes isoform 10 which is shorter and has a distinct C-terminus, compared to isoform 1. Variants 14 - 16 encode the same protein (isoform 10)."
14. NP_001307715.1 zinc finger protein 544 isoform 10: "Transcript Variant: This variant (15) differs in the 5' UTR and uses alternate splice sites in the penultimate and 3' terminal exons, compared to variant 1. It encodes isoform 10 which is shorter and has a distinct C-terminus, compared to isoform 1. Variants 14 - 16 encode the same protein (isoform 10)."
15. NP_001307716.1 zinc finger protein 544 isoform 10: "Transcript Variant: This variant (16) differs in the 5' UTR and uses alternate splice sites in the penultimate and 3' terminal exons, compared to variant 1. It encodes isoform 10 which is shorter and has a distinct C-terminus, compared to isoform 1. Variants 14 - 16 encode the same protein (isoform 10)."
16. NP_001307717.1 zinc finger protein 544 isoform 11: "Transcript Variant: This variant (17) uses an alternate splice site in the penultimate exon, compared to variant 1. It encodes isoform 11 which is shorter and has a distinct C-terminus, compared to isoform 1. Variants 17 - 20 encode the same protein (isoform 11)."
17. NP_001307718.1 zinc finger protein 544 isoform 11: "Transcript Variant: This variant (18) differs in the 5' UTR and uses an alternate splice site in the penultimate exon, compared to variant 1. It encodes isoform 11 which is shorter and has a distinct C-terminus, compared to isoform 1. Variants 17 - 20 encode the same protein (isoform 11)."
18. NP_001307720.1 zinc finger protein 544 isoform 11: "Transcript Variant: This variant (19) differs in the 5' UTR and uses an alternate splice site in the penultimate exon, compared to variant 1. It encodes isoform 11 which is shorter and has a distinct C-terminus, compared to isoform 1. Variants 17 - 20 encode the same protein (isoform 11)."
19. NP_001307721.1 zinc finger protein 544 isoform 11: "Transcript Variant: This variant (20) differs in the 5' UTR and uses an alternate splice site in the penultimate exon, compared to variant 1. It encodes isoform 11 which is shorter and has a distinct C-terminus, compared to isoform 1. Variants 17 - 20 encode the same protein (isoform 11)."
20. NP_055295.2 zinc finger protein 544 isoform 1: "Transcript Variant: This variant (1) encodes the longest isoform (1). Variants 1 - 3 encode the same protein (isoform 1)."

Gene ID: 27338 is UBE2S ubiquitin conjugating enzyme E2 S: "This gene encodes a member of the ubiquitin-conjugating enzyme family. The encoded protein is able to form a thiol ester linkage with ubiquitin in a ubiquitin activating enzyme-dependent manner, a characteristic property of ubiquitin carrier proteins." Conserved Domains (1) summary: pfam00179 Location: 16 → 152 UQ_con; Ubiquitin-conjugating enzyme.

Gene ID: 54807 is ZNF586 zinc finger protein 586.

1. NP_001070894.1 zinc finger protein 586 isoform b: "Transcript Variant: This variant (2) lacks an alternate exon that results in a frameshift in the 3' coding region, compared to variant 1. The encoded isoform (b) has a distinct C-terminus and is shorter than isoform a."
2. NP_001191743.1 zinc finger protein 586 isoform c: "Transcript Variant: This variant (3) differs in its 5' UTR and uses a downstream start codon, compared to variant 1. The encoded isoform (c) is shorter at the N-terminus, compared to isoform a."
3. NP_060122.2 zinc finger protein 586 isoform a: "Transcript Variant: This variant (1) encodes the longest isoform (a)." Conserved Domains (5) summary: smart00349 Location: 15 → 56 KRAB; krueppel associated box, COG5048 Location: 104 → 366 COG5048; FOG: Zn-finger [General function prediction only], sd00017 Location: 208 → 228 ZF_C2H2; C2H2 Zn finger [structural motif], pfam01352 Location: 15 → 54 KRAB; KRAB box and pfam13465 Location: 276 → 300 zf-H2C2_2; Zinc-finger double domain.

Gene ID: 55311 is ZNF444 zinc finger protein 444: "This gene encodes a zinc finger protein which activates transcription of a scavenger receptor gene involved in the degradation of acetylated low density lipoprotein (Ac-LDL) (PMID: 11978792). This gene is located in a cluster of zinc finger genes on chromosome 19 at q13.4. A pseudogene of this gene is located on chromosome 15. Multiple transcript variants encoding different isoforms have been found for this gene." Conserved Domains (4) summary: COG5048 Location: 178 → 279 COG5048; FOG: Zn-finger [General function prediction only], sd00017 Location: 180 → 200 ZF_C2H2; C2H2 Zn finger [structural motif], pfam02023 Location: 21 → 98 SCAN; SCAN domain and pfam13465 Location: 192 → 217 zf-H2C2_2; Zinc-finger double domain.

Gene ID: 55659 is ZNF416 zinc finger protein 416.

1. NP_001340334.1 zinc finger protein 416 isoform 2, Conserved Domains (4) summary: COG5048 Location: 253 → 434 COG5048; FOG: Zn-finger [General function prediction only], COG5189 Location: 418 → 501 SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning], sd00017 Location: 200 → 220 ZF_C2H2; C2H2 Zn finger [structural motif] and pfam13465 Location: 212 → 237 zf-H2C2_2; Zinc-finger double domain.

Gene ID: 55663 is ZNF446 zinc finger protein 446.

1. NP_001291382.1 zinc finger protein 446 isoform 2: "Transcript Variant: This variant (2) has a shorter 5' UTR and differs in the 3' exon structure, compared to variant 1. The encoded isoform (2) has a distinct, shorter C-terminus compared to isoform 1."
2. NP_060378.1 zinc finger protein 446 isoform 1: "Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1)." Conserved Domains (5) summary: smart00431 Location: 22 → 137 SCAN; leucine rich region, sd00017 Location: 334 → 354 ZF_C2H2; C2H2 Zn finger [structural motif], pfam01352 Location: 209 → 237 KRAB; KRAB box, pfam02023 Location: 22 → 110 SCAN; SCAN domain and pfam13465 Location: 410 → 432 zf-H2C2_2; Zinc-finger double domain.

Gene ID: 57191 is VN1R1 vomeronasal 1 receptor 1: "Pheromones are chemical signals that elicit specific behavioral responses and physiologic alterations in recipients of the same species. The protein encoded by this gene is similar to pheromone receptors and is primarily localized to the olfactory mucosa. An alternate splice variant of this gene is thought to exist, but its full length nature has not been determined."

1. NP_065684.1 vomeronasal type-1 receptor 1, Conserved Domains (1) summary: pfam03402 Location: 74 → 335 V1R; Vomeronasal organ pheromone receptor family, V1R.

Gene ID: 57343 is ZNF304 zinc finger protein 304: "This gene encodes a member of the Krueppel C2H2-type zinc-finger family of proteins. The encoded protein functions as a transcriptional repressor that recruits a corepressor complex to stimulate promoter hypermethylation and transcriptional silencing of target genes. Expression of this gene is upregulated in colorectal, ovarian and breast cancer, and this gene may promote cancer cell survival, growth and invasion."

1. NP_001277247.1 zinc finger protein 304 isoform 1: "Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1)." Conserved Domains (5) summary: smart00349 Location: 14 → 73 KRAB; krueppel associated box, COG5048 Location: 325 → 680 COG5048; FOG: Zn-finger [General function prediction only], sd00017 Location: 384 → 404 ZF_C2H2; C2H2 Zn finger [structural motif], pfam01352 Location: 14 → 53 KRAB; KRAB box and pfam13465 Location: 396 → 421 zf-H2C2_2; Zinc-finger double domain.

Gene ID: 57573 is ZNF471 zinc finger protein 471.

1. NP_001308697.1 zinc finger protein 471 isoform, 2 variant 2.
2. NP_065864.2 zinc finger protein 471 isoform 1, 2 variant 1, Conserved Domains (5) summary: smart00349 Location: 14 → 73 KRAB; krueppel associated box, COG5048 Location: 203 → 610 COG5048; FOG: Zn-finger [General function prediction only], sd00017 Location: 517 → 537 ZF_C2H2; C2H2 Zn finger [structural motif], pfam01352 Location: 14 → 53 KRAB; KRAB box, pfam13465 Location: 557 → 581 zf-H2C2_2; Zinc-finger double domain.

Gene ID: 57663 is USP29 ubiquitin specific peptidase 29, Conserved Domains (3) summary: cd02257 Location: 823 → 883 Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome, pfam00443 Location: 286 → 550 UCH; Ubiquitin carboxyl-terminal hydrolase and pfam16674 Location: 3 → 104 UCH_N; N-terminal of ubiquitin carboxyl-terminal hydrolase 37.

Gene ID: 58491 is ZNF71 zinc finger protein 71.

1. NP_001357144.1 endothelial zinc finger protein induced by tumor necrosis factor alpha isoform 2, Conserved Domains (3) summary: COG5048 Location: 170 → 544 COG5048; FOG: Zn-finger [General function prediction only], sd00017 Location: 332 → 352 ZF_C2H2; C2H2 Zn finger [structural motif] and pfam01352 Location: 13 → 54 KRAB; KRAB box.

Gene ID: 63934 is ZNF667 zinc finger protein 667.

1. NP_001308284.1 zinc finger protein 667 isoform 2, variant 3.
2. NP_001308285.1 zinc finger protein 667 isoform 1, variant 2, Conserved Domains (3) summary: smart00349 Location: 15 → 74 KRAB; krueppel associated box, COG5048 Location: 141 → 601 COG5048; FOG: Zn-finger [General function prediction only] and sd00017 Location: 501 → 521 ZF_C2H2; C2H2 Zn finger [structural motif].
3. NP_071386.3 zinc finger protein 667 isoform 1: "Transcript Variant: This variant (1) represents the shorter transcript and encodes the functional protein."

Gene ID: 65982 is ZSCAN18 zinc finger and SCAN domain containing 18.

1. NP_001139014.1 zinc finger and SCAN domain-containing protein 18 isoform 1: "Transcript Variant: This variant (1) encodes the longest protein (isoform 1)." Conserved Domains (3) summary: smart00349 Location: 284 → 321 KRAB; krueppel associated box, sd00017 Location: 471 → 491 ZF_C2H2; C2H2 Zn finger [structural motif] and pfam02023 Location: 102 → 189 SCAN; SCAN domain.
2. NP_001139015.1 zinc finger and SCAN domain-containing protein 18 isoform 3: "Transcript Variant: This variant (4) uses a different segment for its 5' UTR and lacks a coding region segment, which results in the use of a downstream start codon, compared to variant 1. Variants 3 and 4 encode the same protein (isoform 3), which is shorter when it is compared to isoform 1."
3. NP_001139016.1 zinc finger and SCAN domain-containing protein 18 isoform 2: "Transcript Variant: This variant (2) uses a different segment for its 5' UTR and lacks a coding region segment, which results in the use of a downstream start codon, compared to variant 1. The resulting protein (isoform 2) has a shorter N-terminus when it is compared to isoform 1."
4. NP_076415.3 zinc finger and SCAN domain-containing protein 18 isoform 3: "Transcript Variant: This variant (3) uses a different segment for its 5' UTR and lacks a coding region segment, which results in the use of a downstream start codon, compared to variant 1. Variants 3 and 4 encode the same protein (isoform 3), which is shorter when it is compared to isoform 1."

Gene ID: 65996 is CENPBD1P1 CENPB DNA-binding domains containing 1 pseudogene 1, non-coding RNA.

Gene ID: 79149 is ZSCAN5A zinc finger and SCAN domain containing 5A.

1. NP_001308990.1 zinc finger and SCAN domain-containing protein 5A isoform a: "Transcript Variant: This variant (1) and variant 2 both encode isoform a."
2. NP_001308991.1 zinc finger and SCAN domain-containing protein 5A isoform a: "Transcript Variant: This variant (2) and variant 1 both encode isoform a."
3. NP_001308993.1 zinc finger and SCAN domain-containing protein 5A isoform b: "Transcript Variant: This variant (4), along with variants 3, 5-8, and 10-11, encodes isoform b." Conserved Domains (5) summary: cd07936 Location: 40 → 124 SCAN; SCAN oligomerization domain, COG5048 Location: 339 → 492 COG5048; FOG: Zn-finger [General function prediction only], sd00017 Location: 414 → 434 ZF_C2H2; C2H2 Zn finger [structural motif] pfam03546 Location: 213 → 355 Treacle; Treacher Collins syndrome protein Treacle and pfam13465 Location: 454 → 479 zf-H2C2_2; Zinc-finger double domain.
4. NP_001308994.1 zinc finger and SCAN domain-containing protein 5A isoform b: "Transcript Variant: This variant (5), along with variants 3-4, 6-8, and 10-11, encodes isoform b."
5. NP_001308995.1 zinc finger and SCAN domain-containing protein 5A isoform b: "Transcript Variant: This variant (6), along with variants 3-5, 7-8, and 10-11, encodes isoform b."
6. NP_001308996.1 zinc finger and SCAN domain-containing protein 5A isoform b: "Transcript Variant: This variant (7), along with variants 3-6, 8, and 10-11, encodes isoform b."
7. NP_001308997.1 zinc finger and SCAN domain-containing protein 5A isoform b: "Transcript Variant: This variant (8), along with variants 3-7 and 10-11, encodes isoform b."
8. NP_001308999.1 zinc finger and SCAN domain-containing protein 5A isoform b: "Transcript Variant: This variant (10), along with variants 3-8 and 11, encodes isoform b."
9. NP_001309001.1 zinc finger and SCAN domain-containing protein 5A isoform b: "Transcript Variant: This variant (11), along with variants 3-8 and 10, encodes isoform b."
10. NP_001309002.1 zinc finger and SCAN domain-containing protein 5A isoform c: "Transcript Variant: This variant (12), along with variants 13-15, encodes isoform c."
11. NP_001309003.1 zinc finger and SCAN domain-containing protein 5A isoform c: "Transcript Variant: This variant (13), along with variants 12 and 14-15, encodes isoform c."
12. NP_001309004.1 zinc finger and SCAN domain-containing protein 5A isoform c: "Transcript Variant: This variant (14), along with variants 12-13 and 15, encodes isoform c."
13. NP_001309005.1 zinc finger and SCAN domain-containing protein 5A isoform c: "Transcript Variant: This variant (15), along with variants 12-14, encodes isoform c."
14. NP_001309006.1 zinc finger and SCAN domain-containing protein 5A isoform d.
15. NP_001309007.1 zinc finger and SCAN domain-containing protein 5A isoform e.
16. NP_077279.1 zinc finger and SCAN domain-containing protein 5A isoform b: "Transcript Variant: This variant (3), along with variants 4-8 and 10-11, encodes isoform b."

Gene ID: 79336 is OR5AH1P olfactory receptor family 5 subfamily AH member 1 pseudogene: "Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms."

Gene ID: 79673 is ZNF329 zinc finger protein 329.

1. NP_078896.3 zinc finger protein 329, Conserved Domains (5) summary: COG5048 Location: 177 → 539 COG5048; FOG: Zn-finger [General function prediction only], sd00017 Location: 233 → 253 ZF_C2H2; C2H2 Zn finger [structural motif], pfam00096 Location: 203 → 225 zf-C2H2; Zinc finger, C2H2 type, pfam13465 Location: 357 → 382 zf-H2C2_2; Zinc-finger double domain and cl19237 Location: 457 → 524 DUF45; Protein of unknown function DUF45.

Gene ID: 79744 is ZNF419 zinc finger protein 419.

1. NP_001091961.1 zinc finger protein 419 isoform 1: "Transcript Variant: This variant (1) encodes the longest isoform (1)." Conserved Domains (5) summary: smart00349 Location: 28 → 88 KRAB; krueppel associated box, COG5048 Location: 262 → 418 COG5048; FOG: Zn-finger [General function prediction only], sd00017 Location: 262 → 282 ZF_C2H2; C2H2 Zn finger [structural motif], pfam01352 Location: 28 → 67 KRAB; KRAB box and pfam13465 Location: 330 → 355 zf-H2C2_2; Zinc-finger double domain.
2. NP_001091962.1 zinc finger protein 419 isoform 3: "Transcript Variant: This variant (3) lacks an alternate in-frame exon in the 5' coding region, compared to variant 1, resulting in an isoform (3) that is shorter than isoform 1."
3. NP_001091963.1 zinc finger protein 419 isoform 4: "Transcript Variant: This variant (4) lacks an alternate in-frame exon and uses an alternate in-frame splice site in the 5' coding region, compared to variant 1, resulting in an isoform (4) that is shorter than isoform 1."
4. NP_001091964.1 zinc finger protein 419 isoform 5: "Transcript Variant: This variant (5) lacks an alternate in-frame exon in the 5' coding region, compared to variant 1, resulting in an isoform (5) that is shorter than isoform 1."
5. NP_001091965.1 zinc finger protein 419 isoform 6: "Transcript Variant: This variant (6) lacks two alternate in-frame exons in the 5' coding region, compared to variant 1, resulting in an isoform (6) that is shorter than isoform 1."
6. NP_001091966.1 zinc finger protein 419 isoform 7: "Transcript Variant: This variant (7) lacks two alternate in-frame exons and and uses an alternate in-frame splice site in the 5' coding region, compared to variant 1, resulting in an isoform (7) that is shorter than isoform 1."
7. NP_001278672.1 zinc finger protein 419 isoform 8: "Transcript Variant: This variant (8) uses an alternate in-frame splice site and lacks an alternate in-frame exon in the 5' coding region, compared to variant 1, resulting in an isoform (8) that is shorter than isoform 1."
8. NP_001278673.1 zinc finger protein 419 isoform 9 precursor: "Transcript Variant: This variant (9) uses an alternate splice site and it thus differs in its 5' UTR and initiates translation at a downstream in-frame start codon, and it also lacks an in-frame exon in the 5' coding region, compared to variant 1. The encoded isoform (9) is shorter at the N-terminus, compared to isoform 1."
9. NP_001278674.1 zinc finger protein 419 isoform 10: "Transcript Variant: This variant (10) lacks an alternate in-frame exon in the 5' coding region, and it uses an alternate splice site in its 3' terminal exon and thus differs in the 3' coding region, compared to variant 1. The encoded isoform (10) has a distinct C-terminus and is shorter than isoform 1."
10. NP_078967.3 zinc finger protein 419 isoform 2: "Transcript Variant: This variant (2) uses an alternate in-frame splice site in the 5' coding region, compared to variant 1, resulting in an isoform (2) that is shorter than isoform 1."

Gene ID: 79818 is ZNF552 zinc finger protein 552.

1. NP_079038.2 zinc finger protein 552, Conserved Domains (5) summary: smart00349 Location: 14 → 55 KRAB; krueppel associated box, COG5048 Location: 243 → 407 COG5048; FOG: Zn-finger [General function prediction only], sd00017 Location: 298 → 318 ZF_C2H2; C2H2 Zn finger [structural motif], pfam01352 Location: 14 → 53 KRAB; KRAB box and pfam13465 Location: 339 → 362 zf-H2C2_2; Zinc-finger double domain.

Gene ID: 79891 is ZNF671 zinc finger protein 671.

1. NP_001308304.1 zinc finger protein 671 isoform 2. Conserved Domains (5) summary: smart00349 Location: 1 → 32 KRAB; krueppel associated box, COG5048 Location: 208 → 366 COG5048; FOG: Zn-finger [General function prediction only], sd00017 Location: 294 → 314 ZF_C2H2; C2H2 Zn finger [structural motif], pfam00096 Location: 292 → 314 zf-C2H2; Zinc finger, C2H2 type and pfam13465 Location: 223 → 247 zf-H2C2_2; Zinc-finger double domain.
2. NP_001308305.1 zinc finger protein 671 isoform 3.
3. NP_079109.2 zinc finger protein 671 isoform 1.

Gene ID: 80095 is ZNF606 zinc finger protein 606: "This gene encodes a zinc finger protein containing a Kruppel-associated box (KRAB) domain at its N-terminus, followed by contiguous C2H2 zinc finger motifs. The encoded protein is a nuclear protein that can act as a transcriptional repressor of growth factor-mediated signaling pathways in a reporter gene assay. This protein has been shown to interact with the SRY-box 9 gene product, and suppresses its transcriptional activity by inhibiting its DNA binding activity. Reduced expression of this gene promotes chondrocyte differentiation. Alternative splicing results in multiple transcript variants encoding different isoforms."

1. NP_001334951.1 zinc finger protein 606 isoform 1: "Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Both variants 1 and 2 encode the same isoform (1)." Conserved Domains (3) summary: smart00349 Location: 62 → 122 KRAB; krueppel associated box, COG5048 Location: 383 → 774 COG5048; FOG: Zn-finger [General function prediction only] and sd00017 Location: 458 → 478 ZF_C2H2; C2H2 Zn finger [structural motif].

Gene ID: 84878 is ZBTB45 zinc finger and BTB domain containing 45.

1. NP_001303907.1 zinc finger and BTB domain-containing protein 45: "Transcript Variant: This variant (1) represents the longest transcript. All six variants encode the same protein." Conserved Domains (6) summary: smart00225 Location: 34 → 124 BTB; Broad-Complex, Tramtrack and Bric a brac, COG5048 Location: 405 → 472 COG5048; FOG: Zn-finger [General function prediction only], sd00017 Location: 405 → 425 ZF_C2H2; C2H2 Zn finger [structural motif], pfam00096 Location: 459 → 481 zf-C2H2; Zinc finger, C2H2 type, pfam00651 Location: 23 → 122 BTB; BTB/POZ domain and pfam13465 Location: 445 → 470 zf-H2C2_2; Zinc-finger double domain.
2. NP_001303908.1 zinc finger and BTB domain-containing protein 45: "Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1. All six variants encode the same protein."
3. NP_001303909.1 zinc finger and BTB domain-containing protein 45: "Transcript Variant: This variant (4) differs in the 5' UTR compared to variant 1. All six variants encode the same protein."
4. NP_001303910.1 zinc finger and BTB domain-containing protein 45: "Transcript Variant: This variant (5) differs in the 5' UTR compared to variant 1. All six variants encode the same protein."
5. NP_001303911.1 zinc finger and BTB domain-containing protein 45: "Transcript Variant: This variant (6) differs in the 5' UTR compared to variant 1. All six variants encode the same protein."
6. NP_116181.1 zinc finger and BTB domain-containing protein 45: "Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. All six variants encode the same protein."

Gene ID: 84914 is ZNF587 zinc finger protein 587.

1. NP_001191746.1 zinc finger protein 587 isoform 2: "Transcript Variant: This variant (2) uses an alternate in-frame splice site in the 5' coding region, compared to variant 1, resulting in an isoform (2) that is 1 aa shorter than isoform 1." Conserved Domains (5) summary: smart00349 Location: 14 → 69 KRAB; krueppel associated box, COG5048 Location: 272 → 567 COG5048; FOG: Zn-finger [General function prediction only], sd00017 Location: 353 → 373 ZF_C2H2; C2H2 Zn finger [structural motif], pfam01352 Location: 14 → 53 KRAB; KRAB box and pfam13465 Location: 533 → 556 zf-H2C2_2; Zinc-finger double domain.
2. NP_116217.1 zinc finger protein 587 isoform 1: "Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1)."

Gene ID: 85569 is GALP galanin like peptide: "This gene encodes a member of the galanin family of neuropeptides. The encoded protein binds galanin receptors 1, 2 and 3 with the highest affinity for galanin receptor 3 and has been implicated in biological processes involving the central nervous system including hypothalamic regulation of metabolism and reproduction. A peptide encoded by a splice variant of this gene, termed alarin, has vasoactive properties, displays antimicrobial activity against E. coli, and may serve as a marker for neuroblastic tumors."

1. NP_149097.1 galanin-like peptide isoform 1 precursor: "Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1)." Conserved Domains (1) summary: pfam01296 Location: 33 → 45 Galanin; Galanin.

Gene ID: 90233 is ZNF551 zinc finger protein 551.

1. NP_001257867.1 zinc finger protein 551 isoform 2: "Transcript Variant: This variant (2) uses an alternate splice site at the 3' end of the first exon compared to variant 1. The resulting isoform (2) is shorter at the N-terminus compared to isoform 1." Conserved Domains (5) summary: smart00349 Location: 1 → 43 KRAB; krueppel associated box, COG5048 Location: 251 → 596 COG5048; FOG: Zn-finger [General function prediction only], sd00017 Location: 561 → 581 ZF_C2H2; C2H2 Zn finger [structural motif], pfam01352 Location: 1 → 40 KRAB; KRAB box and pfam13465 Location: 601 → 626 zf-H2C2_2; Zinc-finger double domain.
2. NP_612356.2 zinc finger protein 551 isoform 1: "Transcript Variant: This variant (1) represents the longest transcript and encodes the longer isoform (1)."

Gene ID: 90485 is ZNF835 zinc finger protein 835.

1. NP_001005850.2 zinc finger protein 835, Conserved Domains (5) summary: COG5048 Location: 136 → 487 COG5048; FOG: Zn-finger [General function prediction only], sd00017 Location: 140 → 160 ZF_C2H2; C2H2 Zn finger [structural motif], pfam00096 Location: 474 → 496 zf-C2H2; Zinc finger, C2H2 type, pfam13465 Location: 348 → 373 zf-H2C2_2; Zinc-finger double domain and cl00955 Location: 178 → 243 Ribosomal_L34e; Ribosomal protein L34e.

Gene ID: 114026 is ZIM3 zinc finger imprinted 3.

1. NP_443114.1 zinc finger imprinted 3, Conserved Domains (5) summary: smart00349 Location: 8 → 68 KRAB; krueppel associated box, COG5048 Location: 304 → 465 COG5048; FOG: Zn-finger [General function prediction only], sd00017 Location: 281 → 301 ZF_C2H2; C2H2 Zn finger [structural motif], pfam13465 Location: 237 → 261 zf-H2C2_2; Zinc-finger double domain and pfam15909 Location: 172 → 241 zf-C2H2_8; C2H2-type zinc ribbon.

Gene ID: 114189 is SIGLEC31P sialic acid binding Ig like lectin 31, pseudogene.

Gene ID: 116412 is ZNF837 zinc finger protein 837.

1. NP_612475.1 zinc finger protein 837: "Transcript Variant: This variant (2) uses an alternate splice site, compared to variant 1, and is protein-coding." cl26386 Location: 3 → 265 DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III.

Gene ID: 125919 is ZNF543 zinc finger protein 543.

1. NP_998763.2 zinc finger protein 543, Conserved Domains (3) summary: smart00349 Location: 9 → 69 KRAB; krueppel associated box, COG5048 Location: 223 → 562 COG5048; FOG: Zn-finger [General function prediction only] and sd00017 Location: 397 → 417 ZF_C2H2; C2H2 Zn finger [structural motif].

Gene ID: 126204 is NLRP13 NLR family pyrin domain containing 13: "This gene encodes a member of the NACHT, leucine rich repeat, and PYD containing (NLRP) protein family. It has an N-terminal pyrin domain, followed by a NACHT domain, a NACHT-associated domain (NAD), and a C-terminal leucine-rich repeat (LRR) region. NLRP proteins are implicated in the activation of proinflammatory caspases through multiprotein complexes called inflammasomes. Alternative splicing results in multiple transcript variants encoding different isoforms."

1. NP_001307986.1 NACHT, LRR and PYD domains-containing protein 13 isoform 2, Conserved Domains (6) summary: smart00382 Location: 229 → 362 AAA; ATPases associated with a variety of cellular activities, cd00116 Location: 718 → 977 LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1), cd08320 Location: 17 → 107 Pyrin_NALPs; Pyrin death domain found in NALP proteins, sd00033 Location: 784 → 811 LRR_RI; leucine-rich repeat [structural motif], sd00034 Location: 728 → 756 LRR_AMN1; leucine-rich repeat [structural motif] and pfam05729 Location: 230 → 401 NACHT; NACHT domain.

Gene ID: 126205 is NLRP8 NLR family pyrin domain containing 8: "This gene encodes a member of the nucleotide-binding oligomerization domain/ leucine rich repeat/ pyrin domain containing (NLRP) subfamily, which belongs to the Nod-like receptor family of proteins. NLRP genes play roles in the mammalian innate immune system through inflammasome formation and activation of caspases. In addition, NLRP genes have been found to function during mammalian reproduction. Consistent with a function during human preimplantation development, this gene is expressed at high levels in oocytes with decreased levels in embryos. Alternative splicing results in multiple transcript variants."

1. NP_001303929.1 NACHT, LRR and PYD domains-containing protein 8 isoform 2: "Transcript Variant: This variant (2) uses an alternate in-frame splice junction compared to variant 1. The resulting isoform (2) has the same N- and C-termini but is shorter compared to isoform 1." Conserved Domains (6) summary: COG4886 Location: 810 → 974 LRR; Leucine-rich repeat (LRR) protein [Transcription], cd00116 Location: 775 → 988 LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1), cd08320 Location: 41 → 123 Pyrin_NALPs; Pyrin death domain found in NALP proteins, sd00033 Location: 818 → 846 LRR_RI; leucine-rich repeat [structural motif], sd00034 Location: 734 → 760 LRR_AMN1; leucine-rich repeat [structural motif] and cl21455 Location: 205 → 372 P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases.

Gene ID: 126206 is NLRP5 NLR family pyrin domain containing 5: "The protein encoded by this gene belongs to the NALP protein family. Members of the NALP protein family typically contain a NACHT domain, a NACHT-associated domain (NAD), a C-terminal leucine-rich repeat (LRR) region, and an N-terminal pyrin domain (PYD). Expression of this gene is restricted to the oocyte. A mouse gene that encodes a maternal oocyte protein, similar to this encoded protein, is required for normal early embryogenesis."

1. NP_703148.4 NACHT, LRR and PYD domains-containing protein 5, Conserved Domains (5) summary: cd00116 Location: 897 → 1159 LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1), cd08320 Location: 65 → 148 Pyrin_NALPs; Pyrin death domain found in NALP proteins, sd00033 Location: 839 → 863 LRR_RI; leucine-rich repeat [structural motif], sd00034 Location: 868 → 895 LRR_AMN1; leucine-rich repeat [structural motif] and pfam05729 Location: 280 → 443 NACHT; NACHT domain.

Gene ID: 126208 is ZNF787 zinc finger protein 787.

1. NP_001002836.2 zinc finger protein 787 isoform 1: "Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1)." Conserved Domains (2) summary: COG5048 Location: 67 → 200 COG5048; FOG: Zn-finger [General function prediction only] and sd00017 Location: 68 → 88 ZF_C2H2; C2H2 Zn finger [structural motif].

Gene ID: 140612 is ZFP28 ZFP28 zinc finger protein.

1. NP_065879.1 zinc finger protein 28 homolog isoform 1

See identical proteins and their annotated locations for NP_065879.1 Status: VALIDATED Description Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1). Source sequence(s) AC005498, AF507045 Consensus CDS CCDS12946.1 UniProtKB/Swiss-Prot Q8NHY6 Related ENSP00000301318.3, ENST00000301318.8 Conserved Domains (6) summary: smart00349 Location: 103 → 163 KRAB; krueppel associated box, COG5048 Location: 417 → 806 COG5048; FOG: Zn-finger [General function prediction only], sd00017 Location: 619 → 639 ZF_C2H2; C2H2 Zn finger [structural motif], pfam00096 Location: 420 → 442 zf-C2H2; Zinc finger, C2H2 type, pfam01352 Location: 103 → 142 KRAB; KRAB box and pfam13465 Location: 659 → 684 zf-H2C2_2; Zinc-finger double domain.

Gene ID: 147670 is SMIM17 small integral membrane protein 17.

Gene ID: 147685 is C19orf18 chromosome 19 open reading frame 18.

1. NP_689687.1 uncharacterized protein C19orf18 precursor.

Gene ID: 147686 is ZNF418 zinc finger protein 418.

1. NP_001303956.1 zinc finger protein 418 isoform a: "Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (a)." Conserved Domains (5) summary: smart00349 Location: 26 → 67 KRAB; krueppel associated box, COG5048 Location: 304 → 692 COG5048; FOG: Zn-finger [General function prediction only], sd00017 Location: 505 → 525 ZF_C2H2; C2H2 Zn finger [structural motif], pfam01352 Location: 26 → 65 KRAB; KRAB box and pfam13465 Location: 433 → 458 zf-H2C2_2; Zinc-finger double domain.
2. NP_001303957.1 zinc finger protein 418 isoform b: "Transcript Variant: This variant (2) differs in the 5' UTR and coding sequence compared to variant 1. The resulting isoform (b) has a shorter and distinct N-terminus compared to isoform a."
3. NP_001303958.1 zinc finger protein 418 isoform c: "Transcript Variant: This variant (4) differs in the 5' UTR and coding sequence compared to variant 1. The resulting isoform (c) has a shorter and distinct N-terminus compared to isoform a. Variants 3 and 4 both encode the same isoform (c)."
4. NP_001303959.1 zinc finger protein 418 isoform d: "Transcript Variant: This variant (5) lacks three alternate exons compared to variant 1. The resulting isoform (d) is shorter at the N-terminus compared to isoform a."
5. NP_597717.1 zinc finger protein 418 isoform c: "Transcript Variant: This variant (3) lacks an alternate 5' exon and uses an alternate in-frame splice junction compared to variant 1. The resulting isoform (c) has a shorter and distinct N-terminus compared to isoform a. Variants 3 and 4 both encode the same isoform (c)."

Gene ID: 147687 is ZNF417 zinc finger protein 417.

1. NP_001284663.1 zinc finger protein 417 isoform 2: "Transcript Variant: This variant (2) uses an alternate in-frame splice site in the 5' coding region, compared to variant 1. It encodes isoform 2, which is shorter by one amino acid, compared to isoform 1." Conserved Domains (5) summary: smart00349 Location: 14 → 69 KRAB; krueppel associated box, COG5048 Location: 272 → 567 COG5048; FOG: Zn-finger [General function prediction only], sd00017 Location: 353 → 373 ZF_C2H2; C2H2 Zn finger [structural motif], pfam01352 Location: 14 → 53 KRAB; KRAB box and pfam13465 Location: 393 → 418 zf-H2C2_2; Zinc-finger double domain.
2. NP_689688.2 zinc finger protein 417 isoform 1: "Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1)."

Gene ID: 147694 is ZNF548 zinc finger protein 548.

1. NP_001166244.1 zinc finger protein 548 isoform 1: "Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1)." Conserved Domains (5) summary: smart00349 Location: 20 → 60 KRAB; krueppel associated box, COG5048 Location: 292 → 507 COG5048; FOG: Zn-finger [General function prediction only], sd00017 Location: 295 → 315 ZF_C2H2; C2H2 Zn finger [structural motif], pfam01352 Location: 20 → 59 KRAB; KRAB box and pfam13465 Location: 280 → 304 zf-H2C2_2; Zinc-finger double domain.
2. NP_690873.2 zinc finger protein 548 isoform 2: "Transcript Variant: This variant (2) lacks an alternate in-frame exon in the 5' coding region, compared to variant 1. The resulting isoform (2) lacks an internal segment, compared to isoform 1."

Gene ID: 147945 is NLRP4 NLR family pyrin domain containing 4: "The protein encoded by this gene is a member of the nucleotide-binding and leucine-rich repeat receptor (NLR) family, and is predicted to contain an N-terminal pyrin effector domain (PYD), a centrally-located nucleotide-binding and oligomerization domain (NACHT) and C-terminal leucine-rich repeats (LRR). This gene product has a demonstrated role as a negative regulator of autophagy and type I interferon signaling pathways as a result of protein interactions with its NACHT domain. The PYD domain has also been shown to be important in the inhibition of NF-kB (nuclear factor kappa-light-chain-enhancer of activated B cells)."

1. NP_604393.2 NACHT, LRR and PYD domains-containing protein 4, Conserved Domains (7) summary: smart00382 Location: 147 → 279 AAA; ATPases associated with a variety of cellular activities, cd00116 Location: 724 → 957 LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1), cd08320 Location: 11 → 92 Pyrin_NALPs; Pyrin death domain found in NALP proteins, sd00033 Location: 640 → 668 LRR_RI; leucine-rich repeat [structural motif], sd00034 Location: 895 → 922 LRR_AMN1; leucine-rich repeat [structural motif], pfam05729 Location: 149 → 318 NACHT; NACHT domain and cl00416 Location: 512 → 570 CS_ACL-C_CCL; Citrate synthase (CS), citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) from citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. Some CS proteins function as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. CCL cleaves citryl-CoA (CiCoA) to AcCoA and OAA. ACLs catalyze an ATP- and a CoA- dependant cleavage of citrate to form AcCoA and OAA; they do this in a multistep reaction, the final step of which is likely to involve the cleavage of CiCoA to generate AcCoA and OAA. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate CiCoA, and c) the hydrolysis of CiCoA to produce citrate and CoA. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the active site. Type II CSs are unique to gram-negative bacteria and are homohexamers of identical subunits (approximated as a trimer of dimers). Some type II CSs are strongly and specifically inhibited by NADH through an allosteric mechanism. In fungi, yeast, plants, and animals ACL is cytosolic and generates AcCoA for lipogenesis. In several groups of autotrophic prokaryotes and archaea, ACL carries out the citrate-cleavage reaction of the reductive tricarboxylic acid (rTCA) cycle. In the family Aquificaceae this latter reaction in the rTCA cycle is carried out via a two enzyme system the second enzyme of which is CCL.

Gene ID: 147947 is ZNF542P zinc finger protein 542, pseudogene.

1. NR_003127.2 RNA Sequence, non-coding RNA: "Transcript Variant: This variant (4) has an alternate first exon, includes an additional internal exon in the 5' region, and uses an alternate splice site in an internal exon in the 3' region, compared to variant 1."
2. NR_024055.2 RNA Sequence, non-coding RNA: "Transcript Variant: This variant (5) has an alternate first exon, includes an additional internal exon in the 5' region, and lacks an internal exon in the 3' region, compared to variant 1."
3. NR_024056.2 RNA Sequence, non-coding RNA: "Transcript Variant: This variant (2) uses an alternate splice site in an internal exon in the 3' region, compared to variant 1."
4. NR_024057.2 RNA Sequence, non-coding RNA: "Transcript Variant: This variant (3) lacks an alternate internal exon in the 3' region, compared to variant 1."
5. NR_033418.1 RNA Sequence, non-coding RNA: "Transcript Variant: This variant (1) represents the longest transcript."

Gene ID: 147948 is ZNF582 zinc finger protein 582: "The protein encoded by this gene is a zing finger protein and putative transcription factor that is highly methylated in cervical cancers. Two transcript variants encoding different isoforms have been found for this gene."

1. NP_001307300.1 zinc finger protein 582 isoform 1: "Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1)." Conserved Domains (5) summary: smart00349 Location: 39 → 97 KRAB; krueppel associated box, COG5048 Location:211 → 439 COG5048; FOG: Zn-finger [General function prediction only], sd00017 Location: 372 → 392 ZF_C2H2; C2H2 Zn f inger [structural motif], pfam01352 Location: 39 → 76 KRAB; KRAB box and pfam13465 Location: 413 → 437 zf-H2C2_2; Zinc-finger double domain.
2. NP_653291.1 zinc finger protein 582 isoform 2: "Transcript Variant: This variant (2) uses an alternate splice junction in the 5' end compared to variant 1. The resulting isoform (2) is shorter at the N-terminus compared to isoform 1."

Gene ID: 147949 is ZNF583 zinc finger protein 583.

1. NP_001153332.1 zinc finger protein 583: "Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1, 2 and 3 encode the same protein." Conserved Domains (3) summary: smart00349 Location: 6 → 66 KRAB; krueppel associated box, COG5048 Location: 209 → 542 COG5048; FOG: Zn-finger [General function prediction only] and sd00017 Location: 214 → 234 ZF_C2H2; C2H2 Zn finger [structural motif].
2. NP_001153333.1 zinc finger protein 583: "Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1. Variants 1, 2 and 3 encode the same protein."
3. NP_689691.2 zinc finger protein 583: "Transcript Variant: This variant (1) represents the longest transcript. Variants 1, 2 and 3 encode the same protein."

Gene ID: 162968 see Complex locus A1BG and ZNF497.

Gene ID: 162972 is ZNF550 zinc finger protein 550.

1. NP_001264019.1 zinc finger protein 550 isoform a: "Transcript Variant: This variant (1) represents the longest transcript and encodes the longer isoform (a). Variants 1, 2 and 3 all encode isoform a." Conserved Domains (6) summary: smart00349 Location: 12 → 72 KRAB; krueppel associated box, COG5048 Location: 200 → 357 COG5048; FOG: Zn-finger [General function prediction only], sd00017 Location: 205 → 225 ZF_C2H2; C2H2 Zn finger [structural motif], pfam00096 Location: 203 → 225 zf-C2H2; Zinc finger, C2H2 type, pfam01352 Location: 12 → 51 KRAB; KRAB box and pfam13465 Location: 357 → 382 zf-H2C2_2; Zinc-finger double domain.
2. NP_001264020.1 zinc finger protein 550 isoform a: "Transcript Variant: This variant (2) uses an alternate splice site in the 3' UTR, compared to variant 1. Variants 1, 2 and 3 all encode isoform a."
3. NP_001264021.1 zinc finger protein 550 isoform a: "Transcript Variant: This variant (3) lacks an exon in the 3' UTR, compared to variant 1. Variants 1, 2 and 3 all encode isoform a."
4. NP_001264022.1 zinc finger protein 550 isoform b: "Transcript Variant: This variant (4) contains alternate 3' exon structure and it thus differs in the 3' coding region, compared to variant 1. The encoded isoform (b) has a distinct and shorter C-terminus, compared to isoform a."

Gene ID: 201514 is ZNF584 zinc finger protein 584.

1. NP_001304931.1 zinc finger protein 584 isoform 2: "Transcript Variant: This variant (2) uses an alternate in-frame splice site in the 5' coding region and contains an alternate exon the in the 3' coding region that results in a frameshift compared to variant 1. It encodes isoform 2, which is shorter than and has a distinct C-terminus compared to isoform 1." Conserved Domains (2) summary: smart00349 Location: 9 → 69 KRAB; krueppel associated box and pfam01352 Location: 9 → 48 KRAB; KRAB box.
2. NP_001350609.1 zinc finger protein 584 isoform 3 [variant 4].
3. NP_775819.1 zinc finger protein 584 isoform 1: "Transcript Variant: This variant (1) encodes the longest isoform (1)"

Gene ID: 201516 is ZSCAN4 zinc finger and SCAN domain containing 4 aka ZNF494: "The ZSCAN4 gene encodes a protein involved in telomere maintenance and with a key role in the critical feature of mouse embryonic stem (ES) cells, namely, defying cellular senescence and maintaining normal karyotype for many cell divisions in culture (Zalzman et al., 2010 [PubMed 20336070])."

1. NP_689890.1 zinc finger and SCAN domain-containing protein 4, smart00431 Location: 40 → 148 SCAN; leucine rich region and cd07936 Location: 40 → 124 SCAN; SCAN oligomerization domain.

Gene ID: 256051 is ZNF549 zinc finger protein 549: "The ZSCAN4 gene encodes a protein involved in telomere maintenance and with a key role in the critical feature of mouse embryonic stem (ES) cells, namely, defying cellular senescence and maintaining normal karyotype for many cell divisions in culture (Zalzman et al., 2010 [PubMed 20336070])."

1. NP_001186224.2 zinc finger protein 549 isoform 1: "Transcript Variant: This variant (1) encodes the longer isoform (1)." Conserved Domains (4) summary: COG5048 Location: 223 → 603 COG5048; FOG: Zn-finger [General function prediction only], sd00017 Location: 391 → 411 ZF_C2H2; C2H2 Zn finger [structural motif], pfam01352 Location: 27 → 67 KRAB; KRAB box and pfam13465 Location: 600 → 624 zf-H2C2_2; Zinc-finger double domain.
2. NP_694995.2 zinc finger protein 549 isoform 2: "Transcript Variant: This variant (2) contains an alternate exon] in the 5' coding region, compared to variant 1. Isoform 2 has a shorter N-terminus, compared to isoform 1."

Gene ID: 284306 is ZNF547 zinc finger protein 547.

1. NP_775902.2 zinc finger protein 547, Conserved Domains (5) summary: smart00349 Location: 11 → 66 KRAB; krueppel associated box, COG5048 Location: 156 → 314 COG5048; FOG: Zn-finger [General function prediction only], sd00017 Location: 186 → 206 ZF_C2H2; C2H2 Zn finger [structural motif], pfam01352 Location: 11 → 50 KRAB; KRAB box and pfam13465 Location: 199 → 221 zf-H2C2_2; Zinc-finger double domain.

Gene ID: 284307 is ZIK1 zinc finger protein interacting with K protein 1.

1. NP_001010879.2 zinc finger protein interacting with ribonucleoprotein K, variant 1, Conserved Domains (5) summary: smart00349 Location: 27 → 68 KRAB; krueppel associated box, COG5048 Location: 269 → 449 COG5048; FOG: Zn-finger [General function prediction only], sd00017 Location:381 → 401, ZF_C2H2; C2H2 Zn finger [structural motif], pfam01352 Location: 27 → 66 KRAB; KRAB box and pfam13465 Location: 394 → 418 zf-H2C2_2; Zinc-finger double domain.
2. NP_001308074.1 zinc finger protein interacting with ribonucleoprotein K, variant 2.
3. NP_001308075.1 zinc finger protein interacting with ribonucleoprotein K, variant 3.
4. NP_001308076.1 zinc finger protein interacting with ribonucleoprotein K, variant 4.

Gene ID: 284309 is ZNF776 zinc finger protein 776.

1. NP_001334936.1 zinc finger protein 776 isoform 2: "Transcript Variant: This variant (2) uses an alternate splice structure in its 3' coding region, resulting in a translational frameshift and shorter 3' UTR, compared to variant 1. The encoded isoform (2) is substantially shorter and has a distinct C-terminus compared to isoform 1."
2. NP_775903.3 zinc finger protein 776 isoform 1: "Transcript Variant: This variant (1) encodes the longer isoform (1)." Conserved Domains (5) summary: smart00349 Location:14 → 55 KRAB; krueppel associated box, COG5048 Location: 291 → 439 COG5048; FOG: Zn-finger [General function prediction only], sd00017 Location: 322 → 342 ZF_C2H2; C2H2 Zn finger [structural motif], pfam01352 Location: 14 → 53 KRAB; KRAB box and pfam13465 Location: 390 → 415 zf-H2C2_2; Zinc-finger double domain.

Gene ID: 284312 is ZSCAN1 zinc finger and SCAN domain containing 1.

1. NP_872378.3 zinc finger and SCAN domain-containing protein 1, Conserved Domains (3) summary: sd00017 Location: 294 → 314 ZF_C2H2; C2H2 Zn finger [structural motif], pfam02023 Location: 35 → 122 SCAN; SCAN domain and pfam13465 Location: 306 → 331 zf-H2C2_2; Zinc-finger double domain.

Gene ID: 342933 is ZSCAN5B zinc finger and SCAN domain containing 5B.

1. NP_001073925.2 zinc finger and SCAN domain-containing protein 5B, Conserved Domains (5) summary: smart00431 Location: 40 → 139 SCAN; leucine rich region, cd07936 Location: 40 → 124 SCAN; SCAN oligomerization domain, sd00017 Location:385 → 405 ZF_C2H2; C2H2 Zn finger [structural motif], pfam00096 Location: 355 → 377 zf-C2H2; Zinc finger, C2H2 type and pfam13465 Location: 453 → 478 zf-H2C2_2; Zinc-finger double domain.

Gene ID: 342945 see Complex locus A1BG and ZNF497.

Gene ID: 348327 is ZNF530 zinc finger protein 530.

1. NP_001308910.1 zinc finger protein 530 isoform 2, variant 2.
2. NP_065931.3 zinc finger protein 530 isoform 1, variant 1, Conserved Domains (6) summary: smart00349 Location: 14 → 55 KRAB; krueppel associated box, COG5048 Location: 264 → 598 COG5048; FOG: Zn-finger [General function prediction only], sd00017 Location: 521 → 541 ZF_C2H2; C2H2 Zn finger [structural motif], pfam00096 Location: 267 → 289 zf-C2H2; Zinc finger, C2H2 type, pfam01352 Location: 14 → 53 KRAB; KRAB box and pfam13465 Location: 533 → 558 zf-H2C2_2; Zinc-finger double domain.

Gene ID: 374928 is ZNF773 zinc finger protein 773.

1. NP_001291263.1 zinc finger protein 773 isoform b: "Transcript Variant: This variant (2) uses an alternate in-frame splice site in the central coding region compared to variant 1. The encoded isoform (b) is shorter than isoform a." Conserved Domains (5) summary: smart00349 Location: 14 → 74 KRAB; krueppel associated box, COG5048 Location: 208 → 437 COG5048; FOG: Zn-finger [General function prediction only], sd00017 Location: 192 → 212 ZF_C2H2; C2H2 Zn finger [structural motif], pfam01352 Location: 14 → 53 KRAB; KRAB box and pfam13465 Location: 372 → 396 zf-H2C2_2; Zinc-finger double domain.
2. NP_001291264.1 zinc finger protein 773 isoform c: "Transcript Variant: This variant (3) differs in the 3' structure, and uses an alternate in-frame splice site in the central coding region, resulting in a distinct 3' coding region and 3' UTR, compared to variant 1. The encoded isoform (c) is shorter, and has a distinct C-terminus, compared to isoform a."
3. NP_001291265.1 zinc finger protein 773 isoform d: "Transcript Variant: This variant (4) differs in the 3' UTR, and uses two alternate splice site in the coding region, one of which results in a frameshift compared to variant 1. The encoded isoform (d) is shorter, and has a distinct C-terminus, compared to isoform a."
4. NP_001291266.1 zinc finger protein 773 isoform e: "Transcript Variant: This variant (5) differs in the 3' structure, and uses an alternate in-frame splice site in the central coding region, resulting in a distinct 3' coding region and 3' UTR, compared to variant 1. The encoded isoform (e) is shorter, and has a distinct C-terminus, compared to isoform a."
5. NP_940944.1 zinc finger protein 773 isoform a: "Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (a)."

Gene ID: 386758 is ZNF582-AS1 ZNF582 antisense RNA 1 (head to head), ncRNA.

Gene ID: 388566 is ZNF470 zinc finger protein 470.

1. NP_001001668.3 zinc finger protein 470, Conserved Domains (5) summary: smart00349 Location: 23 → 83 KRAB; krueppel associated box, COG5048 Location: 254 → 669 COG5048; FOG: Zn-finger [General function prediction only], sd00017 Location: 258 → 278 ZF_C2H2; C2H2 Zn finger [structural motif], pfam01352 Location: 23 → 62 KRAB; KRAB box and pfam13465 Location: 523 → 548 zf-H2C2_2; Zinc-finger double domain.

Gene ID: 388567 is ZNF749 zinc finger protein 749.

1. NP_001018855.2 zinc finger protein 749 isoform 1, variant 1, Conserved Domains (5) summary: smart00349 Location: 8 → 62 KRAB; krueppel associated box, COG5048 Location: 295 → 689 COG5048; FOG: Zn-finger [General function prediction only], sd00017 Location: 586 → 606 ZF_C2H2; C2H2 Zn finger [structural motif], pfam01352 Location: 10 → 47 KRAB; KRAB box and pfam13465 Location: 599 → 623 zf-H2C2_2; Zinc-finger double domain.
2. NP_001308881.1 zinc finger protein 749 isoform 2, variant 2.
3. NP_001308882.1 zinc finger protein 749 isoform 3, variant 3.
4. NP_001308883.1 zinc finger protein 749 isoform 3, variant 4.

Gene ID: 388569 is ZNF324B zinc finger protein 324B.

1. NP_997278.2 zinc finger protein 324B, Conserved Domains (3) summary: smart00349 Location: 1 → 61 KRAB; krueppel associated box, COG5048 Location: 268 → 499 COG5048; FOG: Zn-finger [General function prediction only] and sd00017 Location: 259 → 279 ZF_C2H2; C2H2 Zn finger [structural motif].

Gene ID: 390980 is ZNF805 zinc finger protein 805.

1. NP_001018857.2 zinc finger protein 805 isoform 1: "Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1)." Conserved Domains (6) summary: smart00349 Location: 13 → 73 KRAB; krueppel associated box, COG5048 Location: 192 → 568 COG5048; FOG: Zn-finger [General function prediction only], sd00017 Location: 485 → 505 ZF_C2H2; C2H2 Zn finger [structural motif], pfam00096 Location: 399 → 421 zf-C2H2; Zinc finger, C2H2 type, pfam01352 Location: 13 → 52 KRAB; KRAB box and pfam13465 Location: 413 → 438 zf-H2C2_2; Zinc-finger double domain.
2. NP_001138550.1 zinc finger protein 805 isoform 2: "Transcript Variant: This variant (2) lacks an alternate exon in the 5' coding region, compared to variant 1. This difference causes translation initiation at a downstream AUG and results in an isoform (2) with a shorter N-terminus compared to isoform 1."

Gene ID: 400720 is ZNF772 zinc finger protein 772.

1. NP_001019767.1 zinc finger protein 772 isoform 1: "Transcript Variant: This variant (1) represents the longest transcript and it encodes the longest protein (isoform 1)." Conserved Domains (6) summary: smart00349 Location: 27 → 87 KRAB; krueppel associated box, COG5048 Location: 158 → 464 COG5048; FOG: Zn-finger [General function prediction only], sd00017 Location: 268 → 288 ZF_C2H2; C2H2 Zn finger [structural motif], pfam00096 Location: 266 → 288 zf-C2H2; Zinc finger, C2H2 type, pfam01352 Location: 27 → 66 KRAB; KRAB box and pfam13465 Location: 280 → 305 zf-H2C2_2; Zinc-finger double domain.
2. NP_001137540.1 zinc finger protein 772 isoform 2: "Transcript Variant: This variant (2) lacks an alternate segment in the coding region, compared to variant 1. The resulting protein (isoform 2) is shorter when it is compared to isoform 1."
3. NP_001317542.1 zinc finger protein 772 isoform 3: "Transcript Variant: This variant differs in the 5' UTR which results in the use of a downstream start codon compared to variant 1. The encoded isoform (3) has a shorter N-terminus than isoform 1."

Gene ID: 503538 see Complex locus A1BG and ZNF497.

Gene ID: 503835 is DUXA double homeobox A: "Homeobox genes encode DNA-binding proteins, many of which are thought to be involved in early embryonic development. Homeobox genes encode a DNA-binding domain of 60 to 63 amino acids referred to as the homeodomain. This gene is a member of the DUXA homeobox gene family. Evidence of mRNA expression has not yet been found for this gene. Multiple, related processed pseudogenes have been found which are thought to reflect expression of this gene in the germ line or embryonic cells."

1. NP_001012747.1 double homeobox protein A, cd00086 Location: 16 → 74 homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner. pfam00046 Location: 105 → 155 Homeobox; Homeobox domain.

Gene ID: 646698 is ZSCAN5DP zinc finger and SCAN domain containing 5D pseudogene.

Gene ID: 646709 is LOC646709 NADH:ubiquinone oxidoreductase complex assembly factor 1 pseudogene.

Gene ID: 646820 is RPL19P19 ribosomal protein L19 pseudogene 19.

Gene ID: 646862 is RNF225 ring finger protein 225.

1. NP_001182064.1 RING finger protein 225: cd00162 Location: 63 → 115 RING; RING-finger (Really Interesting New Gene) RING finger is a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc. It is defined by the "cross-brace" motif that chelates zinc atoms by eight amino acid residues, typically Cys or His, arranged in a characteristic spacing. Canonical RING motifs have been categorized as two major subclasses, RING-HC (C3HC4-type) and RING-H2 (C3H2C3-type), according to their Cys/His content. There are also many variants of RING fingers. Some have different Cys/His pattern. Some lack a single Cys or His residues at typical Zn ligand positions. Especially, the fourth or eighth zinc ligand is prevalently exchanged for an Asp, which can indeed chelate Zn in a RING finger as well. C4C4-, C3HC3D-, C2H2C4-, and C3HC5-type RING fingers are closely related to RING-HC finger. In contrast, C4HC3- (RING-CH alias RINGv), C3H3C2-, C3H2C2D-, C3DHC3-, and C4HC2H-type RING fingers are close to RING-H2 finger. However, not all RING finger-containing proteins display regular RING finger features, and the RING finger family has turned out to be multifarious. The degenerated RING fingers from Siz/PIAS RING (SP-RING) family proteins and sporulation protein RMD5, are characterized by lacking the second, fifth, and sixth Zn2+ ion-coordinating residues. They bind only one Zn2+ ion. On the other hand, the RING fingers of the human APC11 and RBX1 proteins can bind a third Zn atom since they harbor four additional Zn ligands. U-box is a modified form of the RING finger domain that lacks metal chelating Cys and His. It resembles the cross-brace RING structure consisting of three beta-sheets and a single alpha-helix, which would be stabilized by salt bridges instead of chelated metal ions. U-box proteins are widely distributed among eukaryotic organisms and show a higher prevalence in plants than in other organisms. RING finger/U-box-containing proteins are a group of diverse proteins with a variety of cellular functions, including oncogenesis, development, viral replication, signal transduction, the cell cycle and apoptosis. Many of them are ubiquitin-protein ligases (E3s) that serves as a scaffold for binding to ubiquitin-conjugating enzymes (E2s, also referred to as ubiquitin carrier proteins or UBCs) in close proximity to substrate proteins, which enables efficient transfer of ubiquitin from E2 to the substrates.

Gene ID: 649137 is ZSCAN5C zinc finger and SCAN domain containing 5C.

1. NP_001345342.1 zinc finger and SCAN domain-containing protein 5C, cd07936 Location: 40 → 124 SCAN; SCAN oligomerization domain.

Gene ID: 649186 is VN2R17P vomeronasal 2 receptor 17, pseudogene.

Gene ID: 729999 is LOC729999 glycerol-3-phosphate dehydrogenase 2 (mitochondrial) pseudogene.

Gene ID: 730051 is ZNF814 zinc finger protein 814.

1. NP_001138461.1 zinc finger protein 814, Conserved Domains (5) summary: smart00349 Location: 15 → 56 KRAB; krueppel associated box, COG5048 Location: 214 → 650 COG5048; FOG: Zn-finger [General function prediction only], sd00017 Location: 746 → 766 ZF_C2H2; C2H2 Zn finger [structural motif] pfam01352 Location: 15 → 54 KRAB; KRAB box and pfam13465 Location: 590 → 615zf-H2C2_2; Zinc-finger double domain.

Gene ID: 100033406 is VN2R18P vomeronasal 2 receptor 18 pseudogene.

Gene ID: 100033407 is VN2R19P vomeronasal 2 receptor 19, pseudogene.

Gene ID: 100073347 is MIMT1 MER1 repeat containing imprinted transcript 1.

1. NR_024059.2 RNA Sequence: long non-coding RNA.

Gene ID: 100128252 is ZNF667-AS1 ZNF667 antisense RNA 1 (head to head).

1. NR_036521.1 RNA Sequence: "Transcript Variant: This variant (1) represents the longer transcript."
2. NR_036522.1 RNA Sequence: "Transcript Variant: This variant (2) uses an alternate splice donor site, compared to variant 1."

Gene ID: 100128398 is LOC100128398 uncharacterized LOC100128398.

1. NR_036508.1 RNA Sequence: ncRNA.

Gene ID: 100129796 is RPL13P13 ribosomal protein L13 pseudogene 13.

Gene ID: 100130490 is TPRG1LP1 tumor protein p63 regulated 1 like pseudogene 1.

Gene ID: 100131691 is MZF1-AS1 MZF1 antisense RNA 1.

1. NR_027334.2 RNA Sequence: ncRNA.

Gene ID: 100131934 is LETM1P2 leucine zipper and EF-hand containing transmembrane protein 1 pseudogene 2.

Gene ID: 100132009 is LOC100132009 pentatricopeptide repeat domain 3 pseudogene.

Gene ID: 100169890 is PEG3-AS1 PEG3 antisense RNA 1.

1. NR_023847.2 RNA Sequence: ncRNA.

Gene ID: 100271545 is RPL7AP69 ribosomal protein L7a pseudogene 69.

Gene ID: 100271626 is RPL23AP79 ribosomal protein L23a pseudogene 79.

Gene ID: 100271650 is RPS15AP36 ribosomal protein S15a pseudogene 36.

Gene ID: 100288211 is LOC100288211 PPPDE peptidase domain containing 1 pseudogene.

Gene ID: 100293516 is ZNF587B zinc finger protein 587B.

Gene ID: 100312849 is VN1R107P vomeronasal 1 receptor 107 pseudogene.

Gene ID: 100419839 is LOC100419839 zinc finger protein 300 pseudogene.

Gene ID: 100419840 see Complex locus A1BG and ZNF497.

Gene ID: 100419847 is LOC100419847 zinc finger protein 436 pseudogene.

Gene ID: 100419848 is LOC100419848 zinc finger protein 250 pseudogene.

Gene ID: 100421657 is HNRNPDLP4 HNRNPDL pseudogene 4.

Gene ID: 100506374 is EDDM13 epididymal protein 13.

1. NP_001341587.1 epididymal protein 13 precursor.

Gene ID: 100616168 is MIR4754 microRNA 4754: "microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop.".

Gene ID: 100874260 is UBE2CP5 ubiquitin conjugating enzyme E2 C pseudogene 5.

1. NR_144562.1 RNA Sequence: ncRNA.

Gene ID: 100887072 is LOC100887072 zinc finger protein 470 pseudogene.

Gene ID: 101928886 is LINC01864 long intergenic non-protein coding RNA 1864.

Gene ID: 101928982 is LOC101928982 uncharacterized LOC101928982, ncRNA.

Gene ID: 101929059 is ZIM2-AS1 ZIM2 antisense RNA 1. Gene ID: 102465484 is MIR6806 microRNA 6806: "microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop."

Gene ID: 102465976 is MIR6807 microRNA 6807: "microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop."

Gene ID: 105372468 is LOC105372468 uncharacterized LOC105372468, ncRNA.

Gene ID: 105372470 is LOC105372470 uncharacterized LOC105372470, ncRNA.

Gene ID: 105372471 is LOC105372471 uncharacterized LOC105372471, ncRNA.

Gene ID: 105372472 is LOC105372472 uncharacterized LOC105372472, ncRNA.

Gene ID: 105372473 is LOC105372473 uncharacterized LOC105372473, ncRNA.

Gene ID: 105372475 is LOC105372475 uncharacterized LOC105372475, ncRNA.

Gene ID: 105372476 is ZNF460-AS1 ZNF460 antisense RNA 1, ncRNA.

Gene ID: 105372478 is LOC105372478 taste receptor type 1 member 2-like.

1. XP_011525888.1 taste receptor type 1 member 2-like, Conserved Domains (1) summary: cd06350 Location: 1 → 122 PBP1_GPCR_family_C_like; Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs) Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extracellular region is further devided into the ligand-binding domain (LBD) and the cysteine-rich domain. The LBD has sequence similarity to the LIVBP, which is a bacterial periplasmic protein (PBP), as well as to the extracellular region of both iGluR and the gamma-aminobutyric acid (GABA)b receptor. iGluRs are divided into three main subtypes based on pharmacological profile: NMDA, AMPA, and kainate receptors. All family C GPCRs have a large extracellular N terminus that contain a domain with homology to bacterial periplasmic amino acid-binding proteins.

Gene ID: 105372479 is LOC105372479 uncharacterized LOC105372479, ncRNA.

Gene ID: 105372480 is LOC105372480 uncharacterized LOC105372480, ncRNA.

Gene ID: 105372481 is ERVK3-1 endogenous retrovirus group K3 member 1, ncRNA.

Gene ID: 105372482 is LOC105372482 uncharacterized LOC105372482, ncRNA.

Gene ID: 105372483 see Complex locus A1BG and ZNF497.

Gene ID: 105372484 is LOC105372484 uncharacterized LOC105372484, ncRNA.

Gene ID: 105372485 is LOC105372485 uncharacterized LOC105372485, ncRNA.

Gene ID: 105372486 is LOC105372486 uncharacterized LOC105372486, ncRNA.

Gene ID: 106479017 see Complex locus A1BG and ZNF497.

Gene ID: 106479415 is RN7SL526P RNA, 7SL, cytoplasmic 526, pseudogene.

Gene ID: 106479477 is RN7SL693P RNA, 7SL, cytoplasmic 693, pseudogene.

Gene ID: 106480240 is SLC25A36P1 SLC25A36 pseudogene 1.

Gene ID: 106480516 is RN7SL525P RNA, 7SL, cytoplasmic 525, pseudogene.

Gene ID: 106481602 is RNU6-1337P RNA, U6 small nuclear 1337, pseudogene.

Gene ID: 107987272 is LOC107987272 uncharacterized LOC107987272, ncRNA.

Gene ID: 108903150 is ZNF8-ERVK3-1 ZNF8-ERVK3-1 readthrough, ncRNA: "This locus represents naturally occurring readthrough transcription between the neighboring ZNF8 (zinc finger protein 8) and ERVK3-1 (endogenous retrovirus group K3, member 1) genes on chromosome 19. The readthrough transcript is a candidate for nonsense-mediated mRNA decay (NMD), and is unlikely to produce a protein product."

Gene ID: 110806301 is LINC02560 long intergenic non-protein coding RNA 2560, ncRNA.

Gene ID: 113218487 is MIR10394 microRNA 10394.

Gene ID: 114818278 is ZNF71-SMIM17 ZNF71-SMIM17 readthrough (NMD candidate).

Gene locations

1. NLRP8 55947832..
2. Gene ID: 101928886 LINC01864 is at NC_000019.10 (56066684..56078801).
3. ZNF444 ..56160893.
4. RPL13P13 ..56216974.
5. ZSCAN5A 56219670..56368383.
6. Gene ID: 100506374 EDDM13 is at NC_000019.10 (56272748..56310454).
7. Gene ID: 106480240 SLC25A36P1 is at NC_000019.10 (56386226..56386690).
8. ZNF583 ..56427364.
9. ZNF667-AS1 56477874..
10. Gene ID: 101928982 LOC101928982 is at NC_000019.10 (56536158..56538762, complement).
11. ZNF470 56567468..56582894.
12. Gene ID: 114818278 ZNF71-SMIM17 is at NC_000019.10 (56595302..56657247).
13. LOC105372472 ..56758298.
14. Gene ID: 101929059 ZIM2-AS1 is at NC_000019.10 (56765322..56799646).
15. MIMT1 ..56848556.
16. RPL7AP69 57065346..
17. Gene ID: 100419839 LOC100419839 is at NC_000019.10 (57111120..57112027, complement).
18. ZIM3 ..57145202.
19. ZNF587B 57830299.
20. Gene ID: 100874260 UBE2CP5 is at NC_000019.10 (57867760..57869011).
21. ZNF417 ..57916592.
22. LOC105372478 58019302..
23. ZSCAN1 ..58033989.
24. Gene ID: 100421657 HNRNPDLP4 is at NC_000019.10 (58049046..58049547, complement).
25. Gene ID: 106479415 RN7SL526P is at NC_000019.10 (58069970..58070288).
26. ZNF274 58182989..
27. Gene ID: 100419847 LOC100419847 is at NC_000019.10 (58224506..58225357).
28. ZNF8 58278955..
29. Gene ID: 108903150 ZNF8-ERVK3-1 is at NC_000019.10 (58278966..58315657).
30. Gene ID: 100887072 LOC100887072 is at NC_000019.10 (58319277..58320489).
31. Gene ID: 102465484 MIR6806 is at NC_000019.10 (58334688..58334751).
32. ZNF497 58354357..58362751.
33. A1BG-AS1 ..58355183.
34. Gene ID: 105372484 LOC105372484 is at NC_000019.10 (58377583..58379025).
35. Gene ID: 100616168 MIR4754 is at NC_000019.10 (58386770..58386858, complement).
36. RPS5 58387269..58394804.
37. Gene ID: 113218487 MIR10394 is at NC_000019.10 (58393364..58393446).
38. Gene ID: 110806301 LINC02560 is at NC_000019.10 (58400203..58400679).
39. ZNF584 58401472..
40. ZNF132 ..58440153.
41. Gene ID: 100419848 LOC100419848 is at NC_000019.10 (58444928..58445479).
42. ZNF324 ..58475436.
43. LOC112577454 58475962..
44. ZNF446 58476352..
45. Gene ID: 106481602 RNU6-1337P is at NC_000019.10 (58483749..58483843, complement).
46. Gene ID: 106479477 RN7SL693P is at NC_000019.10 (58490797..58491075).
47. SLC27A5 58498333..58512065.
48. Gene ID: 105372485 LOC105372485 is at NC_000019.10 (58499523..58511123).
49. Gene ID: 105372486 LOC105372486 is at NC_000019.10 (58514247..58516426).
50. ZBTB45 ..58542718.
51. Gene ID: 106480516 RN7SL525P is at NC_000019.10 (58543299..58543578, complement).
52. TRIM28 ..58550722.
53. MIR6807 ..58550722.
54. CHMP2A ..58555624.
55. MZF1-AS1 58559186..
56. Gene ID: 107987272 LOC107987272 is at NC_000019.10 (58586267..58590946).
57. RPL23AP79 ..58599484.

Hypotheses

1. Downstream core promoters may work as transcription factors even as their complements or inverses.
2. In addition to the DNA binding sequences listed above, the transcription factors that can open up and attach through the local epigenome need to be known and specified.
3. Each DNA binding domain serving as a transcription factor for the promoter of any immunoglobulin supergene family member, also serves or is present in the promoters for A1BG.
4. The function of A1BG is the same as other immunoglobulin genes possessing the immunoglobulin domain cl11960 and/or any of three immunoglobulin-like domains: pfam13895, cd05751 and smart00410 in the order and nucleotide sequence: cd05751 Location: 401 → 493, smart00410 Location: 218 → 280, pfam13895 Location: 210 → 301 and cl11960 Location: 28 → 110.

See also

• A1BG gene transcriptions
• Alpha-1-B glycoprotein
• Immunoglobulin domain cl11960
• Immunoglobulin like domain cd05751
• Immunoglobulin like domain pfam13895
• Immunoglobulin like domain smart00410
• Immunoglobulin supergene family
• Nuclear factor gene transcriptions
• SCAN domain

External links

• GenomeNet KEGG database
• Home - Gene - NCBI
• NCBI All Databases Search
• NCBI Site Search

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