SALL1: Difference between revisions

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{{Infobox_gene}}
{{PBB_Controls
'''Sal-like 1 (Drosophila)''', also known as '''SALL1''', is a [[protein]] which in humans is encoded by the ''SALL1'' [[gene]].<ref name="entrez">{{cite web | title = Entrez Gene: SALL1 sal-like 1 (Drosophila)| url = https://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=6299| accessdate = }}</ref><ref name="pmid9425907">{{cite journal | vauthors = Kohlhase J, Wischermann A, Reichenbach H, Froster U, Engel W | title = Mutations in the SALL1 putative transcription factor gene cause Townes-Brocks syndrome | journal = Nature Genetics | volume = 18 | issue = 1 | pages = 81–3 | date = Jan 1998 | pmid = 9425907 | doi = 10.1038/ng0198-81 }}</ref> As the full name suggests, it is one of the human versions of the ''spalt'' (''sal'') gene known in ''[[Drosophila]]''.
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<!-- The GNF_Protein_box is automatically maintained by Protein Box Bot.  See Template:PBB_Controls to Stop updates. -->
== Function ==
{{GNF_Protein_box
| image =
| image_source =
| PDB =
| Name = Sal-like 1 (Drosophila)
| HGNCid = 10524
| Symbol = SALL1
| AltSymbols =; HSAL1; TBS; ZNF794
| OMIM = 602218
| ECnumber = 
| Homologene = 2230
| MGIid = 1889585
| GeneAtlas_image1 = PBB_GE_SALL1_206893_at_tn.png
| Function = {{GNF_GO|id=GO:0003700 |text = transcription factor activity}} {{GNF_GO|id=GO:0008270 |text = zinc ion binding}} {{GNF_GO|id=GO:0046872 |text = metal ion binding}}
| Component = {{GNF_GO|id=GO:0005622 |text = intracellular}} {{GNF_GO|id=GO:0005634 |text = nucleus}}
| Process = {{GNF_GO|id=GO:0001657 |text = ureteric bud development}} {{GNF_GO|id=GO:0006350 |text = transcription}} {{GNF_GO|id=GO:0006355 |text = regulation of transcription, DNA-dependent}} {{GNF_GO|id=GO:0009653 |text = anatomical structure morphogenesis}} {{GNF_GO|id=GO:0031129 |text = inductive cell-cell signaling}}
| Orthologs = {{GNF_Ortholog_box
    | Hs_EntrezGene = 6299
    | Hs_Ensembl = ENSG00000103449
    | Hs_RefseqProtein = NP_002959
    | Hs_RefseqmRNA = NM_002968
    | Hs_GenLoc_db = 
    | Hs_GenLoc_chr = 16
    | Hs_GenLoc_start = 49727830
    | Hs_GenLoc_end = 49742653
    | Hs_Uniprot = Q9NSC2
    | Mm_EntrezGene = 58198
    | Mm_Ensembl = ENSMUSG00000031665
    | Mm_RefseqmRNA = NM_021390
    | Mm_RefseqProtein = NP_067365
    | Mm_GenLoc_db = 
    | Mm_GenLoc_chr = 8
    | Mm_GenLoc_start = 91917351
    | Mm_GenLoc_end = 91934267
    | Mm_Uniprot = Q6P5E3
  }}
}}
'''Sal-like 1 (Drosophila)''', also known as '''SALL1''', is a human [[gene]].<ref name="entrez">{{cite web | title = Entrez Gene: SALL1 sal-like 1 (Drosophila)| url = http://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=6299| accessdate = }}</ref>


<!-- The PBB_Summary template is automatically maintained by Protein Box Bot. See Template:PBB_Controls to Stop updates. -->
The protein encoded by this gene is a [[zinc finger]] transcriptional repressor and may be part of the NuRD [[histone deacetylase]] (HDAC) complex.<ref name="entrez"/>
{{PBB_Summary
| section_title =
| summary_text =
}}


==References==
== Clinical significance ==
{{reflist|2}}
==Further reading==
{{refbegin | 2}}
{{PBB_Further_reading
| citations =
*{{cite journal  | author=Nishinakamura R, Takasato M |title=Essential roles of Sall1 in kidney development. |journal=Kidney Int. |volume=68 |issue= 5 |pages= 1948-50 |year= 2006 |pmid= 16221172 |doi= 10.1111/j.1523-1755.2005.00626.x }}
*{{cite journal  | author=Sweetman D, Münsterberg A |title=The vertebrate spalt genes in development and disease. |journal=Dev. Biol. |volume=293 |issue= 2 |pages= 285-93 |year= 2006 |pmid= 16545361 |doi= 10.1016/j.ydbio.2006.02.009 }}
*{{cite journal  | author=Kohlhase J, Schuh R, Dowe G, ''et al.'' |title=Isolation, characterization, and organ-specific expression of two novel human zinc finger genes related to the Drosophila gene spalt. |journal=Genomics |volume=38 |issue= 3 |pages= 291-8 |year= 1997 |pmid= 8975705 |doi= 10.1006/geno.1996.0631 }}
*{{cite journal  | author=Kohlhase J, Wischermann A, Reichenbach H, ''et al.'' |title=Mutations in the SALL1 putative transcription factor gene cause Townes-Brocks syndrome. |journal=Nat. Genet. |volume=18 |issue= 1 |pages= 81-3 |year= 1998 |pmid= 9425907 |doi= 10.1038/ng0198-81 }}
*{{cite journal  | author=Kohlhase J, Taschner PE, Burfeind P, ''et al.'' |title=Molecular analysis of SALL1 mutations in Townes-Brocks syndrome. |journal=Am. J. Hum. Genet. |volume=64 |issue= 2 |pages= 435-45 |year= 1999 |pmid= 9973281 |doi=  }}
*{{cite journal  | author=Marlin S, Blanchard S, Slim R, ''et al.'' |title=Townes-Brocks syndrome: detection of a SALL1 mutation hot spot and evidence for a position effect in one patient. |journal=Hum. Mutat. |volume=14 |issue= 5 |pages= 377-86 |year= 2000 |pmid= 10533063 |doi= 10.1002/(SICI)1098-1004(199911)14:5<377::AID-HUMU3>3.0.CO;2-A }}
*{{cite journal  | author=Engels S, Kohlhase J, McGaughran J |title=A SALL1 mutation causes a branchio-oto-renal syndrome-like phenotype. |journal=J. Med. Genet. |volume=37 |issue= 6 |pages= 458-60 |year= 2000 |pmid= 10928856 |doi=  }}
*{{cite journal  | author=Buck A, Archangelo L, Dixkens C, Kohlhase J |title=Molecular cloning, chromosomal localization, and expression of the murine SALL1 ortholog Sall1. |journal=Cytogenet. Cell Genet. |volume=89 |issue= 3-4 |pages= 150-3 |year= 2000 |pmid= 10965108 |doi=  }}
*{{cite journal  | author=Surka WS, Kohlhase J, Neunert CE, ''et al.'' |title=Unique family with Townes-Brocks syndrome, SALL1 mutation, and cardiac defects. |journal=Am. J. Med. Genet. |volume=102 |issue= 3 |pages= 250-7 |year= 2001 |pmid= 11484202 |doi=  }}
*{{cite journal  | author=Netzer C, Rieger L, Brero A, ''et al.'' |title=SALL1, the gene mutated in Townes-Brocks syndrome, encodes a transcriptional repressor which interacts with TRF1/PIN2 and localizes to pericentromeric heterochromatin. |journal=Hum. Mol. Genet. |volume=10 |issue= 26 |pages= 3017-24 |year= 2002 |pmid= 11751684 |doi=  }}
*{{cite journal  | author=Kiefer SM, McDill BW, Yang J, Rauchman M |title=Murine Sall1 represses transcription by recruiting a histone deacetylase complex. |journal=J. Biol. Chem. |volume=277 |issue= 17 |pages= 14869-76 |year= 2002 |pmid= 11836251 |doi= 10.1074/jbc.M200052200 }}
*{{cite journal  | author=Ma Y, Chai L, Cortez SC, ''et al.'' |title=SALL1 expression in the human pituitary-adrenal/gonadal axis. |journal=J. Endocrinol. |volume=173 |issue= 3 |pages= 437-48 |year= 2002 |pmid= 12065233 |doi=  }}
*{{cite journal  | author=Netzer C, Bohlander SK, Rieger L, ''et al.'' |title=Interaction of the developmental regulator SALL1 with UBE2I and SUMO-1. |journal=Biochem. Biophys. Res. Commun. |volume=296 |issue= 4 |pages= 870-6 |year= 2002 |pmid= 12200128 |doi=  }}
*{{cite journal  | author=Strausberg RL, Feingold EA, Grouse LH, ''et al.'' |title=Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. |journal=Proc. Natl. Acad. Sci. U.S.A. |volume=99 |issue= 26 |pages= 16899-903 |year= 2003 |pmid= 12477932 |doi= 10.1073/pnas.242603899 }}
*{{cite journal  | author=Sato A, Kishida S, Tanaka T, ''et al.'' |title=Sall1, a causative gene for Townes-Brocks syndrome, enhances the canonical Wnt signaling by localizing to heterochromatin. |journal=Biochem. Biophys. Res. Commun. |volume=319 |issue= 1 |pages= 103-13 |year= 2004 |pmid= 15158448 |doi= 10.1016/j.bbrc.2004.04.156 }}
*{{cite journal  | author=Suzuki Y, Yamashita R, Shirota M, ''et al.'' |title=Sequence comparison of human and mouse genes reveals a homologous block structure in the promoter regions. |journal=Genome Res. |volume=14 |issue= 9 |pages= 1711-8 |year= 2004 |pmid= 15342556 |doi= 10.1101/gr.2435604 }}
*{{cite journal  | author=Botzenhart EM, Green A, Ilyina H, ''et al.'' |title=SALL1 mutation analysis in Townes-Brocks syndrome: twelve novel mutations and expansion of the phenotype. |journal=Hum. Mutat. |volume=26 |issue= 3 |pages= 282 |year= 2006 |pmid= 16088922 |doi= 10.1002/humu.9362 }}
*{{cite journal  | author=Kimura K, Wakamatsu A, Suzuki Y, ''et al.'' |title=Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. |journal=Genome Res. |volume=16 |issue= 1 |pages= 55-65 |year= 2006 |pmid= 16344560 |doi= 10.1101/gr.4039406 }}
*{{cite journal  | author=Borozdin W, Steinmann K, Albrecht B, ''et al.'' |title=Detection of heterozygous SALL1 deletions by quantitative real time PCR proves the contribution of a SALL1 dosage effect in the pathogenesis of Townes-Brocks syndrome. |journal=Hum. Mutat. |volume=27 |issue= 2 |pages= 211-2 |year= 2006 |pmid= 16429401 |doi= 10.1002/humu.9396 }}
}}
{{refend}}


{{protein-stub}}
Defects in this gene are a cause of [[Townes–Brocks syndrome]] (TBS) as well as [[branchio-oto-renal syndrome]] (BOR). Two transcript variants encoding different isoforms have been found for this gene.<ref name="entrez"/>
{{WikiDoc Sources}}
 
== Interactions ==
 
SALL1 has been shown to [[Protein-protein interaction|interact]] with [[TERF1]]<ref name=pmid11751684>{{cite journal | vauthors = Netzer C, Rieger L, Brero A, Zhang CD, Hinzke M, Kohlhase J, Bohlander SK | title = SALL1, the gene mutated in Townes-Brocks syndrome, encodes a transcriptional repressor which interacts with TRF1/PIN2 and localizes to pericentromeric heterochromatin | journal = Human Molecular Genetics | volume = 10 | issue = 26 | pages = 3017–24 | date = Dec 2001 | pmid = 11751684 | doi = 10.1093/hmg/10.26.3017 }}</ref> and [[UBE2I]].<ref name=pmid12200128>{{cite journal | vauthors = Netzer C, Bohlander SK, Rieger L, Müller S, Kohlhase J | title = Interaction of the developmental regulator SALL1 with UBE2I and SUMO-1 | journal = Biochemical and Biophysical Research Communications | volume = 296 | issue = 4 | pages = 870–6 | date = Aug 2002 | pmid = 12200128 | doi = 10.1016/S0006-291X(02)02003-X }}</ref>
 
== References ==
{{Reflist}}
 
== External links ==
* [https://www.ncbi.nlm.nih.gov/bookshelf/br.fcgi?book=gene&part=tbs  GeneReviews/NCBI/NIH/UW entry on Townes-Brocks Syndrome]
 
== Further reading ==
{{Refbegin | 2}}
* {{cite journal | vauthors = Nishinakamura R, Takasato M | title = Essential roles of Sall1 in kidney development | journal = Kidney International | volume = 68 | issue = 5 | pages = 1948–50 | date = Nov 2005 | pmid = 16221172 | doi = 10.1111/j.1523-1755.2005.00626.x }}
* {{cite journal | vauthors = Sweetman D, Münsterberg A | title = The vertebrate spalt genes in development and disease | journal = Developmental Biology | volume = 293 | issue = 2 | pages = 285–93 | date = May 2006 | pmid = 16545361 | doi = 10.1016/j.ydbio.2006.02.009 }}
* {{cite journal | vauthors = Kohlhase J, Schuh R, Dowe G, Kühnlein RP, Jäckle H, Schroeder B, Schulz-Schaeffer W, Kretzschmar HA, Köhler A, Müller U, Raab-Vetter M, Burkhardt E, Engel W, Stick R | title = Isolation, characterization, and organ-specific expression of two novel human zinc finger genes related to the Drosophila gene spalt | journal = Genomics | volume = 38 | issue = 3 | pages = 291–8 | date = Dec 1996 | pmid = 8975705 | doi = 10.1006/geno.1996.0631 }}
* {{cite journal | vauthors = Kohlhase J, Wischermann A, Reichenbach H, Froster U, Engel W | title = Mutations in the SALL1 putative transcription factor gene cause Townes-Brocks syndrome | journal = Nature Genetics | volume = 18 | issue = 1 | pages = 81–3 | date = Jan 1998 | pmid = 9425907 | doi = 10.1038/ng0198-81 }}
* {{cite journal | vauthors = Kohlhase J, Taschner PE, Burfeind P, Pasche B, Newman B, Blanck C, Breuning MH, ten Kate LP, Maaswinkel-Mooy P, Mitulla B, Seidel J, Kirkpatrick SJ, Pauli RM, Wargowski DS, Devriendt K, Proesmans W, Gabrielli O, Coppa GV, Wesby-van Swaay E, Trembath RC, Schinzel AA, Reardon W, Seemanova E, Engel W | title = Molecular analysis of SALL1 mutations in Townes-Brocks syndrome | journal = American Journal of Human Genetics | volume = 64 | issue = 2 | pages = 435–45 | date = Feb 1999 | pmid = 9973281 | pmc = 1377753 | doi = 10.1086/302238 }}
* {{cite journal | vauthors = Marlin S, Blanchard S, Slim R, Lacombe D, Denoyelle F, Alessandri JL, Calzolari E, Drouin-Garraud V, Ferraz FG, Fourmaintraux A, Philip N, Toublanc JE, Petit C | title = Townes-Brocks syndrome: detection of a SALL1 mutation hot spot and evidence for a position effect in one patient | journal = Human Mutation | volume = 14 | issue = 5 | pages = 377–86 | year = 2000 | pmid = 10533063 | doi = 10.1002/(SICI)1098-1004(199911)14:5<377::AID-HUMU3>3.0.CO;2-A }}
* {{cite journal | vauthors = Engels S, Kohlhase J, McGaughran J | title = A SALL1 mutation causes a branchio-oto-renal syndrome-like phenotype | journal = Journal of Medical Genetics | volume = 37 | issue = 6 | pages = 458–60 | date = Jun 2000 | pmid = 10928856 | pmc = 1734618 | doi = 10.1136/jmg.37.6.458 }}
* {{cite journal | vauthors = Buck A, Archangelo L, Dixkens C, Kohlhase J | title = Molecular cloning, chromosomal localization, and expression of the murine SALL1 ortholog Sall1 | journal = Cytogenetics and Cell Genetics | volume = 89 | issue = 3-4 | pages = 150–3 | year = 2000 | pmid = 10965108 | doi = 10.1159/000015598 }}
* {{cite journal | vauthors = Surka WS, Kohlhase J, Neunert CE, Schneider DS, Proud VK | title = Unique family with Townes-Brocks syndrome, SALL1 mutation, and cardiac defects | journal = American Journal of Medical Genetics | volume = 102 | issue = 3 | pages = 250–7 | date = Aug 2001 | pmid = 11484202 | doi = 10.1002/1096-8628(20010815)102:3<250::AID-AJMG1479>3.0.CO;2-Q }}
* {{cite journal | vauthors = Netzer C, Rieger L, Brero A, Zhang CD, Hinzke M, Kohlhase J, Bohlander SK | title = SALL1, the gene mutated in Townes-Brocks syndrome, encodes a transcriptional repressor which interacts with TRF1/PIN2 and localizes to pericentromeric heterochromatin | journal = Human Molecular Genetics | volume = 10 | issue = 26 | pages = 3017–24 | date = Dec 2001 | pmid = 11751684 | doi = 10.1093/hmg/10.26.3017 }}
* {{cite journal | vauthors = Kiefer SM, McDill BW, Yang J, Rauchman M | title = Murine Sall1 represses transcription by recruiting a histone deacetylase complex | journal = The Journal of Biological Chemistry | volume = 277 | issue = 17 | pages = 14869–76 | date = Apr 2002 | pmid = 11836251 | doi = 10.1074/jbc.M200052200 }}
* {{cite journal | vauthors = Ma Y, Chai L, Cortez SC, Stopa EG, Steinhoff MM, Ford D, Morgan J, Maizel AL | title = SALL1 expression in the human pituitary-adrenal/gonadal axis | journal = The Journal of Endocrinology | volume = 173 | issue = 3 | pages = 437–48 | date = Jun 2002 | pmid = 12065233 | doi = 10.1677/joe.0.1730437 }}
* {{cite journal | vauthors = Netzer C, Bohlander SK, Rieger L, Müller S, Kohlhase J | title = Interaction of the developmental regulator SALL1 with UBE2I and SUMO-1 | journal = Biochemical and Biophysical Research Communications | volume = 296 | issue = 4 | pages = 870–6 | date = Aug 2002 | pmid = 12200128 | doi = 10.1016/S0006-291X(02)02003-X }}
* {{cite journal | vauthors = Sato A, Kishida S, Tanaka T, Kikuchi A, Kodama T, Asashima M, Nishinakamura R | title = Sall1, a causative gene for Townes-Brocks syndrome, enhances the canonical Wnt signaling by localizing to heterochromatin | journal = Biochemical and Biophysical Research Communications | volume = 319 | issue = 1 | pages = 103–13 | date = Jun 2004 | pmid = 15158448 | doi = 10.1016/j.bbrc.2004.04.156 }}
* {{cite journal | vauthors = Suzuki Y, Yamashita R, Shirota M, Sakakibara Y, Chiba J, Mizushima-Sugano J, Nakai K, Sugano S | title = Sequence comparison of human and mouse genes reveals a homologous block structure in the promoter regions | journal = Genome Research | volume = 14 | issue = 9 | pages = 1711–8 | date = Sep 2004 | pmid = 15342556 | pmc = 515316 | doi = 10.1101/gr.2435604 }}
* {{cite journal | vauthors = Botzenhart EM, Green A, Ilyina H, König R, Lowry RB, Lo IF, Shohat M, Burke L, McGaughran J, Chafai R, Pierquin G, Michaelis RC, Whiteford ML, Simola KO, Rösler B, Kohlhase J | title = SALL1 mutation analysis in Townes-Brocks syndrome: twelve novel mutations and expansion of the phenotype | journal = Human Mutation | volume = 26 | issue = 3 | pages = 282 | date = Sep 2005 | pmid = 16088922 | doi = 10.1002/humu.9362 }}
* {{cite journal | vauthors = Kimura K, Wakamatsu A, Suzuki Y, Ota T, Nishikawa T, Yamashita R, Yamamoto J, Sekine M, Tsuritani K, Wakaguri H, Ishii S, Sugiyama T, Saito K, Isono Y, Irie R, Kushida N, Yoneyama T, Otsuka R, Kanda K, Yokoi T, Kondo H, Wagatsuma M, Murakawa K, Ishida S, Ishibashi T, Takahashi-Fujii A, Tanase T, Nagai K, Kikuchi H, Nakai K, Isogai T, Sugano S | title = Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes | journal = Genome Research | volume = 16 | issue = 1 | pages = 55–65 | date = Jan 2006 | pmid = 16344560 | pmc = 1356129 | doi = 10.1101/gr.4039406 }}
* {{cite journal | vauthors = Borozdin W, Steinmann K, Albrecht B, Bottani A, Devriendt K, Leipoldt M, Kohlhase J | title = Detection of heterozygous SALL1 deletions by quantitative real time PCR proves the contribution of a SALL1 dosage effect in the pathogenesis of Townes-Brocks syndrome | journal = Human Mutation | volume = 27 | issue = 2 | pages = 211–2 | date = Feb 2006 | pmid = 16429401 | doi = 10.1002/humu.9396 }}
{{Refend}}
 
{{NLM content}}
{{Transcription factors|g2}}
 
 
 
[[Category:Transcription factors]]

Latest revision as of 05:52, 11 September 2017

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Identifiers
Aliases
External IDsGeneCards: [1]
Orthologs
SpeciesHumanMouse
Entrez

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Ensembl

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UniProt

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RefSeq (mRNA)

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RefSeq (protein)

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Location (UCSC)n/an/a
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Wikidata
View/Edit Human

Sal-like 1 (Drosophila), also known as SALL1, is a protein which in humans is encoded by the SALL1 gene.[1][2] As the full name suggests, it is one of the human versions of the spalt (sal) gene known in Drosophila.

Function

The protein encoded by this gene is a zinc finger transcriptional repressor and may be part of the NuRD histone deacetylase (HDAC) complex.[1]

Clinical significance

Defects in this gene are a cause of Townes–Brocks syndrome (TBS) as well as branchio-oto-renal syndrome (BOR). Two transcript variants encoding different isoforms have been found for this gene.[1]

Interactions

SALL1 has been shown to interact with TERF1[3] and UBE2I.[4]

References

  1. ↑ 1.0 1.1 1.2 "Entrez Gene: SALL1 sal-like 1 (Drosophila)".
  2. ↑ Kohlhase J, Wischermann A, Reichenbach H, Froster U, Engel W (Jan 1998). "Mutations in the SALL1 putative transcription factor gene cause Townes-Brocks syndrome". Nature Genetics. 18 (1): 81–3. doi:10.1038/ng0198-81. PMID 9425907.
  3. ↑ Netzer C, Rieger L, Brero A, Zhang CD, Hinzke M, Kohlhase J, Bohlander SK (Dec 2001). "SALL1, the gene mutated in Townes-Brocks syndrome, encodes a transcriptional repressor which interacts with TRF1/PIN2 and localizes to pericentromeric heterochromatin". Human Molecular Genetics. 10 (26): 3017–24. doi:10.1093/hmg/10.26.3017. PMID 11751684.
  4. ↑ Netzer C, Bohlander SK, Rieger L, Müller S, Kohlhase J (Aug 2002). "Interaction of the developmental regulator SALL1 with UBE2I and SUMO-1". Biochemical and Biophysical Research Communications. 296 (4): 870–6. doi:10.1016/S0006-291X(02)02003-X. PMID 12200128.

External links

Further reading

This article incorporates text from the United States National Library of Medicine, which is in the public domain.

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