HOXA4: Difference between revisions

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Latest revision as of 20:03, 8 November 2017

Homeobox A4, also known as HOXA4, is a protein which in humans is encoded by the HOXA4 gene.^[1]^[2]

Function

In vertebrates, the genes encoding the class of transcription factors called homeobox genes are found in clusters named A, B, C, and D on four separate chromosomes.^[3] Expression of these proteins is spatially and temporally regulated during embryonic development. This gene is part of the A cluster on chromosome 7 and encodes a DNA-binding transcription factor which may regulate gene expression, morphogenesis, and differentiation.^[1]

References

↑ ^1.0 ^1.1 "Entrez Gene: HOXA4 homeobox A4".
↑ McAlpine PJ, Shows TB (July 1990). "Nomenclature for human homeobox genes". Genomics. 7 (3): 460. doi:10.1016/0888-7543(90)90186-X. PMID 1973146.
↑ Scott MP (November 1992). "Vertebrate homeobox gene nomenclature". Cell. 71 (4): 551–3. doi:10.1016/0092-8674(92)90588-4. PMID 1358459.

Scott MP (1992). "Vertebrate homeobox gene nomenclature". Cell. 71 (4): 551–3. doi:10.1016/0092-8674(92)90588-4. PMID 1358459.
Buettner R, Yim SO, Hong YS, et al. (1991). "Alteration of homeobox gene expression by N-ras transformation of PA-1 human teratocarcinoma cells". Mol. Cell. Biol. 11 (7): 3573–83. PMC 361102. PMID 1675427.
McAlpine PJ, Shows TB (1990). "Nomenclature for human homeobox genes". Genomics. 7 (3): 460. doi:10.1016/0888-7543(90)90186-X. PMID 1973146.
Peverali FA, D'Esposito M, Acampora D, et al. (1991). "Expression of HOX homeogenes in human neuroblastoma cell culture lines". Differentiation. 45 (1): 61–9. doi:10.1111/j.1432-0436.1990.tb00458.x. PMID 1981366.
Ferguson-Smith AC, Fienberg A, Ruddle FH (1989). "Isolation, chromosomal localization, and nucleotide sequence of the human HOX 1.4 homeobox". Genomics. 5 (2): 250–8. doi:10.1016/0888-7543(89)90054-2. PMID 2571574.
Boncinelli E, Acampora D, Pannese M, et al. (1990). "Organization of human class I homeobox genes". Genome. 31 (2): 745–56. doi:10.1139/g89-133. PMID 2576652.
Verlinsky Y, Morozov G, Gindilis V, et al. (1995). "Homeobox gene expression in human oocytes and preembryos". Mol. Reprod. Dev. 41 (2): 127–32. doi:10.1002/mrd.1080410202. PMID 7654365.
Apiou F, Flagiello D, Cillo C, et al. (1996). "Fine mapping of human HOX gene clusters". Cytogenet. Cell Genet. 73 (1–2): 114–5. doi:10.1159/000134320. PMID 8646877.
Kuliev A, Kukharenko V, Morozov G, et al. (1996). "Expression of homebox-containing genes in human preimplantation development and in embryos with chromosomal aneuploidies". J. Assist. Reprod. Genet. 13 (2): 177–81. doi:10.1007/BF02072541. PMID 8688592.
Duluc I, Lorentz O, Fritsch C, et al. (1997). "Changing intestinal connective tissue interactions alters homeobox gene expression in epithelial cells". J. Cell Sci. 110 (11): 1317–24. PMID 9202392.
Stelnicki EJ, Kömüves LG, Kwong AO, et al. (1998). "HOX homeobox genes exhibit spatial and temporal changes in expression during human skin development". J. Invest. Dermatol. 110 (2): 110–5. doi:10.1046/j.1523-1747.1998.00092.x. PMID 9457903.
Verlinsky Y, Morozov G, Verlinsky O, et al. (1998). "Isolation of cDNA libraries from individual human preimplantation embryos". Mol. Hum. Reprod. 4 (6): 571–5. doi:10.1093/molehr/4.6.571. PMID 9665340.
"Toward a complete human genome sequence". Genome Res. 8 (11): 1097–108. 1999. doi:10.1101/gr.8.11.1097. PMID 9847074.
Kosaki K, Kosaki R, Suzuki T, et al. (2002). "Complete mutation analysis panel of the 39 human HOX genes". Teratology. 65 (2): 50–62. doi:10.1002/tera.10009. PMID 11857506.
Larramendy ML, Niini T, Elonen E, et al. (2003). "Overexpression of translocation-associated fusion genes of FGFRI, MYC, NPMI, and DEK, but absence of the translocations in acute myeloid leukemia. A microarray analysis". Haematologica. 87 (6): 569–77. PMID 12031912.
Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. doi:10.1073/pnas.242603899. PMC 139241. PMID 12477932.
Méchine-Neuville A, Lefebvre O, Bellocq JP, et al. (2003). "[Increased expression of HOXA9 gene in Hirschsprung disease]". Gastroenterol. Clin. Biol. 26 (12): 1110–7. PMID 12520199.
Hillier LW, Fulton RS, Fulton LA, et al. (2003). "The DNA sequence of human chromosome 7". Nature. 424 (6945): 157–64. doi:10.1038/nature01782. PMID 12853948.
Strathdee G, Sim A, Parker A, et al. (2007). "Promoter hypermethylation silences expression of the HoxA4 gene and correlates with IgVh mutational status in CLL". Leukemia. 20 (7): 1326–9. doi:10.1038/sj.leu.2404254. PMID 16688227.

External links

HOXA4+protein,+human at the US National Library of Medicine Medical Subject Headings (MeSH)

This article incorporates text from the United States National Library of Medicine, which is in the public domain.

This article on a gene on human chromosome 7 is a stub. You can help Wikipedia by expanding it.

[entrez-1] 1.0 ^1.1 "Entrez Gene: HOXA4 homeobox A4".

[pmid1973146-2] McAlpine PJ, Shows TB (July 1990). "Nomenclature for human homeobox genes". Genomics. 7 (3): 460. doi:10.1016/0888-7543(90)90186-X. PMID 1973146.

[pmid1358459-3] Scott MP (November 1992). "Vertebrate homeobox gene nomenclature". Cell. 71 (4): 551–3. doi:10.1016/0092-8674(92)90588-4. PMID 1358459.

[1]

[2]

[3]

@@ Line 1: / Line 1: @@
-<!-- The PBB_Controls template provides controls for Protein Box Bot, please see Template:PBB_Controls for details. -->
+{{Infobox_gene}}
-{{PBB_Controls
+'''Homeobox A4''', also known as '''HOXA4''', is a [[protein]] which in humans is encoded by the ''HOXA4'' [[gene]].<ref name="entrez">{{cite web | title = Entrez Gene: HOXA4 homeobox A4| url = https://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=3201| accessdate = }}</ref><ref name="pmid1973146">{{cite journal |vauthors=McAlpine PJ, Shows TB | title = Nomenclature for human homeobox genes| journal = Genomics | volume = 7 | issue = 3 | pages = 460 |date=July 1990 | pmid = 1973146 | doi = 10.1016/0888-7543(90)90186-X| url = }}</ref>
-| update_page = yes
-| require_manual_inspection = no
-| update_protein_box = yes
-| update_summary = yes
-| update_citations = yes
-}}
-<!-- The GNF_Protein_box is automatically maintained by Protein Box Bot.  See Template:PBB_Controls to Stop updates. -->
+== Function ==
-{{GNF_Protein_box
- | image =
- | image_source =
- | PDB =
- | Name = Homeobox A4
- | HGNCid = 5105
- | Symbol = HOXA4
- | AltSymbols =; HOX1; HOX1D
- | OMIM = 142953
- | ECnumber =
- | Homologene = 37583
- | MGIid = 96176
- | GeneAtlas_image1 = PBB_GE_HOXA4_206289_at_tn.png
- | Function = {{GNF_GO|id=GO:0003700 |text = transcription factor activity}} {{GNF_GO|id=GO:0043565 |text = sequence-specific DNA binding}}
- | Component = {{GNF_GO|id=GO:0005634 |text = nucleus}}
- | Process = {{GNF_GO|id=GO:0006355 |text = regulation of transcription, DNA-dependent}} {{GNF_GO|id=GO:0007275 |text = multicellular organismal development}} {{GNF_GO|id=GO:0009653 |text = anatomical structure morphogenesis}}
- | Orthologs = {{GNF_Ortholog_box
-    | Hs_EntrezGene = 3201
-    | Hs_Ensembl = ENSG00000197576
-    | Hs_RefseqProtein = NP_002132
-    | Hs_RefseqmRNA = NM_002141
-    | Hs_GenLoc_db =
-    | Hs_GenLoc_chr = 7
-    | Hs_GenLoc_start = 27134535
-    | Hs_GenLoc_end = 27136924
-    | Hs_Uniprot = Q00056
-    | Mm_EntrezGene = 15401
-    | Mm_Ensembl = ENSMUSG00000000942
-    | Mm_RefseqmRNA = NM_008265
-    | Mm_RefseqProtein = NP_032291
-    | Mm_GenLoc_db =
-    | Mm_GenLoc_chr = 6
-    | Mm_GenLoc_start = 52119270
-    | Mm_GenLoc_end = 52121286
-    | Mm_Uniprot = Q61681
-  }}
-}}
-'''Homeobox A4''', also known as '''HOXA4''', is a human [[gene]].<ref name="entrez">{{cite web | title = Entrez Gene: HOXA4 homeobox A4| url = http://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=3201| accessdate = }}</ref>
-<!-- The PBB_Summary template is automatically maintained by Protein Box Bot.  See Template:PBB_Controls to Stop updates. -->
+In vertebrates, the genes encoding the class of [[transcription factor]]s called [[homeobox]] genes are found in clusters named A, B, C, and D on four separate chromosomes.<ref name="pmid1358459">{{cite journal | author = Scott MP | title = Vertebrate homeobox gene nomenclature | journal = Cell | volume = 71 | issue = 4 | pages = 551–3 |date=November 1992 | pmid = 1358459 | doi = 10.1016/0092-8674(92)90588-4| url = }}</ref>  Expression of these proteins is spatially and temporally regulated during [[embryonic development]]. This gene is part of the A cluster on chromosome 7 and encodes a DNA-binding transcription factor which may regulate [[gene expression]], [[morphogenesis]], and [[cellular differentiation|differentiation]].<ref name="entrez"/>
-{{PBB_Summary
-| section_title =
-| summary_text = In vertebrates, the genes encoding the class of transcription factors called homeobox genes are found in clusters named A, B, C, and D on four separate chromosomes. Expression of these proteins is spatially and temporally regulated during embryonic development. This gene is part of the A cluster on chromosome 7 and encodes a DNA-binding transcription factor which may regulate gene expression, morphogenesis, and differentiation.<ref name="entrez">{{cite web | title = Entrez Gene: HOXA4 homeobox A4| url = http://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=3201| accessdate = }}</ref>
-}}
 ==See also==
 * [[Homeobox]]
-==References==
+== References ==
-{{reflist|2}}
+{{reflist}}
 ==Further reading==
@@ Line 64: / Line 16: @@
 {{PBB_Further_reading
 | citations =
-*{{cite journal  | author=Scott MP |title=Vertebrate homeobox gene nomenclature. |journal=Cell |volume=71 |issue= 4 |pages= 551-3 |year= 1992 |pmid= 1358459 |doi=  }}
+*{{cite journal  | author=Scott MP |title=Vertebrate homeobox gene nomenclature. |journal=Cell |volume=71 |issue= 4 |pages= 551–3 |year= 1992 |pmid= 1358459 |doi=10.1016/0092-8674(92)90588-4  }}
-*{{cite journal  | author=Buettner R, Yim SO, Hong YS, ''et al.'' |title=Alteration of homeobox gene expression by N-ras transformation of PA-1 human teratocarcinoma cells. |journal=Mol. Cell. Biol. |volume=11 |issue= 7 |pages= 3573-83 |year= 1991 |pmid= 1675427 |doi=  }}
+*{{cite journal   |vauthors=Buettner R, Yim SO, Hong YS, etal |title=Alteration of homeobox gene expression by N-ras transformation of PA-1 human teratocarcinoma cells. |journal=Mol. Cell. Biol. |volume=11 |issue= 7 |pages= 3573–83 |year= 1991 |pmid= 1675427 |doi=  | pmc=361102  }}
-*{{cite journal  | author=McAlpine PJ, Shows TB |title=Nomenclature for human homeobox genes. |journal=Genomics |volume=7 |issue= 3 |pages= 460 |year= 1990 |pmid= 1973146 |doi=  }}
+*{{cite journal  |vauthors=McAlpine PJ, Shows TB |title=Nomenclature for human homeobox genes. |journal=Genomics |volume=7 |issue= 3 |pages= 460 |year= 1990 |pmid= 1973146 |doi=10.1016/0888-7543(90)90186-X  }}
-*{{cite journal  | author=Peverali FA, D'Esposito M, Acampora D, ''et al.'' |title=Expression of HOX homeogenes in human neuroblastoma cell culture lines. |journal=Differentiation |volume=45 |issue= 1 |pages= 61-9 |year= 1991 |pmid= 1981366 |doi=  }}
+*{{cite journal   |vauthors=Peverali FA, D'Esposito M, Acampora D, etal |title=Expression of HOX homeogenes in human neuroblastoma cell culture lines. |journal=Differentiation |volume=45 |issue= 1 |pages= 61–9 |year= 1991 |pmid= 1981366 |doi=10.1111/j.1432-0436.1990.tb00458.x  }}
-*{{cite journal  | author=Ferguson-Smith AC, Fienberg A, Ruddle FH |title=Isolation, chromosomal localization, and nucleotide sequence of the human HOX 1.4 homeobox. |journal=Genomics |volume=5 |issue= 2 |pages= 250-8 |year= 1989 |pmid= 2571574 |doi=  }}
+*{{cite journal  |vauthors=Ferguson-Smith AC, Fienberg A, Ruddle FH |title=Isolation, chromosomal localization, and nucleotide sequence of the human HOX 1.4 homeobox. |journal=Genomics |volume=5 |issue= 2 |pages= 250–8 |year= 1989 |pmid= 2571574 |doi=10.1016/0888-7543(89)90054-2  }}
-*{{cite journal  | author=Boncinelli E, Acampora D, Pannese M, ''et al.'' |title=Organization of human class I homeobox genes. |journal=Genome |volume=31 |issue= 2 |pages= 745-56 |year= 1990 |pmid= 2576652 |doi=  }}
+*{{cite journal   |vauthors=Boncinelli E, Acampora D, Pannese M, etal |title=Organization of human class I homeobox genes. |journal=Genome |volume=31 |issue= 2 |pages= 745–56 |year= 1990 |pmid= 2576652 |doi=  10.1139/g89-133}}
-*{{cite journal  | author=Verlinsky Y, Morozov G, Gindilis V, ''et al.'' |title=Homeobox gene expression in human oocytes and preembryos. |journal=Mol. Reprod. Dev. |volume=41 |issue= 2 |pages= 127-32 |year= 1995 |pmid= 7654365 |doi= 10.1002/mrd.1080410202 }}
+*{{cite journal   |vauthors=Verlinsky Y, Morozov G, Gindilis V, etal |title=Homeobox gene expression in human oocytes and preembryos. |journal=Mol. Reprod. Dev. |volume=41 |issue= 2 |pages= 127–32 |year= 1995 |pmid= 7654365 |doi= 10.1002/mrd.1080410202 }}
-*{{cite journal  | author=Apiou F, Flagiello D, Cillo C, ''et al.'' |title=Fine mapping of human HOX gene clusters. |journal=Cytogenet. Cell Genet. |volume=73 |issue= 1-2 |pages= 114-5 |year= 1996 |pmid= 8646877 |doi=  }}
+*{{cite journal   |vauthors=Apiou F, Flagiello D, Cillo C, etal |title=Fine mapping of human HOX gene clusters. |journal=Cytogenet. Cell Genet. |volume=73 |issue= 1-2 |pages= 114–5 |year= 1996 |pmid= 8646877 |doi=10.1159/000134320  }}
-*{{cite journal  | author=Kuliev A, Kukharenko V, Morozov G, ''et al.'' |title=Expression of homebox-containing genes in human preimplantation development and in embryos with chromosomal aneuploidies. |journal=J. Assist. Reprod. Genet. |volume=13 |issue= 2 |pages= 177-81 |year= 1996 |pmid= 8688592 |doi=  }}
+*{{cite journal   |vauthors=Kuliev A, Kukharenko V, Morozov G, etal |title=Expression of homebox-containing genes in human preimplantation development and in embryos with chromosomal aneuploidies. |journal=J. Assist. Reprod. Genet. |volume=13 |issue= 2 |pages= 177–81 |year= 1996 |pmid= 8688592 |doi=10.1007/BF02072541  }}
-*{{cite journal  | author=Duluc I, Lorentz O, Fritsch C, ''et al.'' |title=Changing intestinal connective tissue interactions alters homeobox gene expression in epithelial cells. |journal=J. Cell. Sci. |volume=110 ( Pt 11) |issue=  |pages= 1317-24 |year= 1997 |pmid= 9202392 |doi=  }}
+*{{cite journal   |vauthors=Duluc I, Lorentz O, Fritsch C, etal |title=Changing intestinal connective tissue interactions alters homeobox gene expression in epithelial cells. |journal=J. Cell Sci. |volume=110 |issue=  11|pages= 1317–24 |year= 1997 |pmid= 9202392 |doi=  }}
-*{{cite journal  | author=Stelnicki EJ, Kömüves LG, Kwong AO, ''et al.'' |title=HOX homeobox genes exhibit spatial and temporal changes in expression during human skin development. |journal=J. Invest. Dermatol. |volume=110 |issue= 2 |pages= 110-5 |year= 1998 |pmid= 9457903 |doi= 10.1046/j.1523-1747.1998.00092.x }}
+*{{cite journal   |vauthors=Stelnicki EJ, Kömüves LG, Kwong AO, etal |title=HOX homeobox genes exhibit spatial and temporal changes in expression during human skin development. |journal=J. Invest. Dermatol. |volume=110 |issue= 2 |pages= 110–5 |year= 1998 |pmid= 9457903 |doi= 10.1046/j.1523-1747.1998.00092.x }}
-*{{cite journal  | author=Verlinsky Y, Morozov G, Verlinsky O, ''et al.'' |title=Isolation of cDNA libraries from individual human preimplantation embryos. |journal=Mol. Hum. Reprod. |volume=4 |issue= 6 |pages= 571-5 |year= 1998 |pmid= 9665340 |doi=  }}
+*{{cite journal   |vauthors=Verlinsky Y, Morozov G, Verlinsky O, etal |title=Isolation of cDNA libraries from individual human preimplantation embryos. |journal=Mol. Hum. Reprod. |volume=4 |issue= 6 |pages= 571–5 |year= 1998 |pmid= 9665340 |doi=10.1093/molehr/4.6.571  }}
-*{{cite journal  | author= |title=Toward a complete human genome sequence. |journal=Genome Res. |volume=8 |issue= 11 |pages= 1097-108 |year= 1999 |pmid= 9847074 |doi=  }}
+*{{cite journal  |title=Toward a complete human genome sequence. |journal=Genome Res. |volume=8 |issue= 11 |pages= 1097–108 |year= 1999 |pmid= 9847074 |doi=  10.1101/gr.8.11.1097}}
-*{{cite journal  | author=Kosaki K, Kosaki R, Suzuki T, ''et al.'' |title=Complete mutation analysis panel of the 39 human HOX genes. |journal=Teratology |volume=65 |issue= 2 |pages= 50-62 |year= 2002 |pmid= 11857506 |doi= 10.1002/tera.10009 }}
+*{{cite journal   |vauthors=Kosaki K, Kosaki R, Suzuki T, etal |title=Complete mutation analysis panel of the 39 human HOX genes. |journal=Teratology |volume=65 |issue= 2 |pages= 50–62 |year= 2002 |pmid= 11857506 |doi= 10.1002/tera.10009 }}
-*{{cite journal  | author=Larramendy ML, Niini T, Elonen E, ''et al.'' |title=Overexpression of translocation-associated fusion genes of FGFRI, MYC, NPMI, and DEK, but absence of the translocations in acute myeloid leukemia. A microarray analysis. |journal=Haematologica |volume=87 |issue= 6 |pages= 569-77 |year= 2003 |pmid= 12031912 |doi=  }}
+*{{cite journal   |vauthors=Larramendy ML, Niini T, Elonen E, etal |title=Overexpression of translocation-associated fusion genes of FGFRI, MYC, NPMI, and DEK, but absence of the translocations in acute myeloid leukemia. A microarray analysis. |journal=Haematologica |volume=87 |issue= 6 |pages= 569–77 |year= 2003 |pmid= 12031912 |doi=  }}
-*{{cite journal  | author=Strausberg RL, Feingold EA, Grouse LH, ''et al.'' |title=Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. |journal=Proc. Natl. Acad. Sci. U.S.A. |volume=99 |issue= 26 |pages= 16899-903 |year= 2003 |pmid= 12477932 |doi= 10.1073/pnas.242603899 }}
+*{{cite journal   |vauthors=Strausberg RL, Feingold EA, Grouse LH, etal |title=Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. |journal=Proc. Natl. Acad. Sci. U.S.A. |volume=99 |issue= 26 |pages= 16899–903 |year= 2003 |pmid= 12477932 |doi= 10.1073/pnas.242603899  | pmc=139241 }}
-*{{cite journal  | author=Méchine-Neuville A, Lefebvre O, Bellocq JP, ''et al.'' |title=[Increased expression of HOXA9 gene in Hirschsprung disease] |journal=Gastroenterol. Clin. Biol. |volume=26 |issue= 12 |pages= 1110-7 |year= 2003 |pmid= 12520199 |doi=  }}
+*{{cite journal   |vauthors=Méchine-Neuville A, Lefebvre O, Bellocq JP, etal |title=[Increased expression of HOXA9 gene in Hirschsprung disease] |journal=Gastroenterol. Clin. Biol. |volume=26 |issue= 12 |pages= 1110–7 |year= 2003 |pmid= 12520199 |doi=  }}
-*{{cite journal  | author=Hillier LW, Fulton RS, Fulton LA, ''et al.'' |title=The DNA sequence of human chromosome 7. |journal=Nature |volume=424 |issue= 6945 |pages= 157-64 |year= 2003 |pmid= 12853948 |doi= 10.1038/nature01782 }}
+*{{cite journal   |vauthors=Hillier LW, Fulton RS, Fulton LA, etal |title=The DNA sequence of human chromosome 7. |journal=Nature |volume=424 |issue= 6945 |pages= 157–64 |year= 2003 |pmid= 12853948 |doi= 10.1038/nature01782 }}
-*{{cite journal  | author=Strathdee G, Sim A, Parker A, ''et al.'' |title=Promoter hypermethylation silences expression of the HoxA4 gene and correlates with IgVh mutational status in CLL. |journal=Leukemia |volume=20 |issue= 7 |pages= 1326-9 |year= 2007 |pmid= 16688227 |doi= 10.1038/sj.leu.2404254 }}
+*{{cite journal   |vauthors=Strathdee G, Sim A, Parker A, etal |title=Promoter hypermethylation silences expression of the HoxA4 gene and correlates with IgVh mutational status in CLL. |journal=Leukemia |volume=20 |issue= 7 |pages= 1326–9 |year= 2007 |pmid= 16688227 |doi= 10.1038/sj.leu.2404254 }}
 }}
 {{refend}}
@@ Line 90: / Line 42: @@
 {{NLM content}}
-{{protein-stub}}
+{{Transcription factors|g3}}
-{{Transcription factors}}
+<!-- The PBB_Controls template provides controls for Protein Box Bot, please see Template:PBB_Controls for details. -->
+{{PBB_Controls
+| update_page = yes
+| require_manual_inspection = no
+| update_protein_box = yes
+| update_summary = no
+| update_citations = yes
+}}
 [[Category:Transcription factors]]
-{{WikiDoc Sources}}
+{{gene-7-stub}}

HOXA4: Difference between revisions

Latest revision as of 20:03, 8 November 2017

Contents

Function

See also

References

Further reading

External links

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