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< | {{For|the failed Formula One team|US F1 Team}} | ||
{{ | {{Infobox_gene}} | ||
| | '''Upstream stimulatory factor 1''' is a [[protein]] that in humans is encoded by the ''USF1'' [[gene]].<ref name="pmid8486371">{{cite journal | vauthors = Shieh BH, Sparkes RS, Gaynor RB, Lusis AJ | title = Localization of the gene-encoding upstream stimulatory factor (USF) to human chromosome 1q22-q23 | journal = Genomics | volume = 16 | issue = 1 | pages = 266–8 | date = Apr 1993 | pmid = 8486371 | pmc = | doi = 10.1006/geno.1993.1174 }}</ref><ref name="entrez">{{cite web | title = Entrez Gene: USF1 upstream transcription factor 1| url = https://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=7391| accessdate = }}</ref> | ||
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== Function == | |||
This gene encodes a member of the [[basic helix-loop-helix]] [[leucine zipper]] family and can function as a cellular [[transcription factor]]. The encoded protein can activate transcription through pyrimidine-rich [[initiator element|initiator]] (Inr) elements and [[E-box]] motifs. This gene has been linked to [[combined hyperlipidemia|familial combined hyperlipidemia (FCHL)]]. Two transcript variants encoding distinct [[Protein isoform|isoforms]] have been identified for this gene.<ref name="entrez"/> | |||
==References== | A study of mice suggested reduced USF1 levels increases metabolism in [[brown fat]].<ref name="pmid26819196">{{cite journal | vauthors = Laurila PP, Soronen J, Kooijman S, Forsström S, Boon MR, Surakka I, Kaiharju E, Coomans CP, Van Den Berg SA, Autio A, Sarin AP, Kettunen J, Tikkanen E, Manninen T, Metso J, Silvennoinen R, Merikanto K, Ruuth M, Perttilä J, Mäkelä A, Isomi A, Tuomainen AM, Tikka A, Ramadan UA, Seppälä I, Lehtimäki T, Eriksson J, Havulinna A, Jula A, Karhunen PJ, Salomaa V, Perola M, Ehnholm C, Lee-Rueckert M, Van Eck M, Roivainen A, Taskinen MR, Peltonen L, Mervaala E, Jalanko A, Hohtola E, Olkkonen VM, Ripatti S, Kovanen PT, Rensen PC, Suomalainen A, Jauhiainen M | display-authors = 6 | title = USF1 deficiency activates brown adipose tissue and improves cardiometabolic health | journal = Science Translational Medicine | volume = 8 | issue = 323 | pages = 323ra13 | year = 2016 | pmid = 26819196 | doi = 10.1126/scitranslmed.aad0015 }}</ref> | ||
{{reflist | |||
==Further reading== | == Interactions == | ||
USF1 (human gene) has been shown to [[Protein-protein interaction|interact]] with [[USF2]],<ref name=pmid17353931>{{cite journal | vauthors = Ewing RM, Chu P, Elisma F, Li H, Taylor P, Climie S, McBroom-Cerajewski L, Robinson MD, O'Connor L, Li M, Taylor R, Dharsee M, Ho Y, Heilbut A, Moore L, Zhang S, Ornatsky O, Bukhman YV, Ethier M, Sheng Y, Vasilescu J, Abu-Farha M, Lambert JP, Duewel HS, Stewart II, Kuehl B, Hogue K, Colwill K, Gladwish K, Muskat B, Kinach R, Adams SL, Moran MF, Morin GB, Topaloglou T, Figeys D | title = Large-scale mapping of human protein-protein interactions by mass spectrometry | journal = Molecular Systems Biology | volume = 3 | issue = 1 | pages = 89 | year = 2007 | pmid = 17353931 | pmc = 1847948 | doi = 10.1038/msb4100134 }}</ref><ref name=pmid8576131>{{cite journal | vauthors = Viollet B, Lefrançois-Martinez AM, Henrion A, Kahn A, Raymondjean M, Martinez A | title = Immunochemical characterization and transacting properties of upstream stimulatory factor isoforms | journal = The Journal of Biological Chemistry | volume = 271 | issue = 3 | pages = 1405–15 | date = Jan 1996 | pmid = 8576131 | doi = 10.1074/jbc.271.3.1405 }}</ref> [[FOSL1]]<ref name=pmid9160889>{{cite journal | vauthors = Pognonec P, Boulukos KE, Aperlo C, Fujimoto M, Ariga H, Nomoto A, Kato H | title = Cross-family interaction between the bHLHZip USF and bZip Fra1 proteins results in down-regulation of AP1 activity | journal = Oncogene | volume = 14 | issue = 17 | pages = 2091–8 | date = May 1997 | pmid = 9160889 | doi = 10.1038/sj.onc.1201046 }}</ref> and [[GTF2I]].<ref name=pmid9384587>{{cite journal | vauthors = Roy AL, Du H, Gregor PD, Novina CD, Martinez E, Roeder RG | title = Cloning of an inr- and E-box-binding protein, TFII-I, that interacts physically and functionally with USF1 | journal = The EMBO Journal | volume = 16 | issue = 23 | pages = 7091–104 | date = Dec 1997 | pmid = 9384587 | pmc = 1170311 | doi = 10.1093/emboj/16.23.7091 }}</ref><ref name=pmid1961251>{{cite journal | vauthors = Roy AL, Meisterernst M, Pognonec P, Roeder RG | title = Cooperative interaction of an initiator-binding transcription initiation factor and the helix-loop-helix activator USF | journal = Nature | volume = 354 | issue = 6350 | pages = 245–8 | date = Nov 1991 | pmid = 1961251 | doi = 10.1038/354245a0 }}</ref> | |||
== References == | |||
{{reflist}} | |||
== Further reading == | |||
{{refbegin | 2}} | {{refbegin | 2}} | ||
* {{cite journal | vauthors = Corre S, Galibert MD | title = [USF as a key regulatory element of gene expression] | journal = Médecine Sciences | volume = 22 | issue = 1 | pages = 62–7 | date = Jan 2006 | pmid = 16386222 | doi = 10.1051/medsci/200622162 }} | |||
* {{cite journal | vauthors = Lee JC, Lusis AJ, Pajukanta P | title = Familial combined hyperlipidemia: upstream transcription factor 1 and beyond | journal = Current Opinion in Lipidology | volume = 17 | issue = 2 | pages = 101–9 | date = Apr 2006 | pmid = 16531745 | doi = 10.1097/01.mol.0000217890.54875.13 }} | |||
*{{cite journal | * {{cite journal | vauthors = Roy AL, Meisterernst M, Pognonec P, Roeder RG | title = Cooperative interaction of an initiator-binding transcription initiation factor and the helix-loop-helix activator USF | journal = Nature | volume = 354 | issue = 6350 | pages = 245–8 | date = Nov 1991 | pmid = 1961251 | doi = 10.1038/354245a0 }} | ||
*{{cite journal | * {{cite journal | vauthors = Gregor PD, Sawadogo M, Roeder RG | title = The adenovirus major late transcription factor USF is a member of the helix-loop-helix group of regulatory proteins and binds to DNA as a dimer | journal = Genes & Development | volume = 4 | issue = 10 | pages = 1730–40 | date = Oct 1990 | pmid = 2249772 | doi = 10.1101/gad.4.10.1730 }} | ||
*{{cite journal | * {{cite journal | vauthors = Henrion AA, Martinez A, Mattei MG, Kahn A, Raymondjean M | title = Structure, sequence, and chromosomal location of the gene for USF2 transcription factors in mouse | journal = Genomics | volume = 25 | issue = 1 | pages = 36–43 | date = Jan 1995 | pmid = 7774954 | doi = 10.1016/0888-7543(95)80107-W }} | ||
*{{cite journal | * {{cite journal | vauthors = Ferré-D'Amaré AR, Pognonec P, Roeder RG, Burley SK | title = Structure and function of the b/HLH/Z domain of USF | journal = The EMBO Journal | volume = 13 | issue = 1 | pages = 180–9 | date = Jan 1994 | pmid = 8306960 | pmc = 394791 | doi = }} | ||
*{{cite journal | * {{cite journal | vauthors = Viollet B, Lefrançois-Martinez AM, Henrion A, Kahn A, Raymondjean M, Martinez A | title = Immunochemical characterization and transacting properties of upstream stimulatory factor isoforms | journal = The Journal of Biological Chemistry | volume = 271 | issue = 3 | pages = 1405–15 | date = Jan 1996 | pmid = 8576131 | doi = 10.1074/jbc.271.3.1405 }} | ||
*{{cite journal | * {{cite journal | vauthors = Ghosh AK, Datta PK, Jacob ST | title = The dual role of helix-loop--helix-zipper protein USF in ribosomal RNA gene transcription in vivo | journal = Oncogene | volume = 14 | issue = 5 | pages = 589–94 | date = Feb 1997 | pmid = 9053857 | doi = 10.1038/sj.onc.1200866 }} | ||
*{{cite journal | * {{cite journal | vauthors = Pognonec P, Boulukos KE, Aperlo C, Fujimoto M, Ariga H, Nomoto A, Kato H | title = Cross-family interaction between the bHLHZip USF and bZip Fra1 proteins results in down-regulation of AP1 activity | journal = Oncogene | volume = 14 | issue = 17 | pages = 2091–8 | date = May 1997 | pmid = 9160889 | doi = 10.1038/sj.onc.1201046 }} | ||
*{{cite journal | * {{cite journal | vauthors = Roy AL, Du H, Gregor PD, Novina CD, Martinez E, Roeder RG | title = Cloning of an inr- and E-box-binding protein, TFII-I, that interacts physically and functionally with USF1 | journal = The EMBO Journal | volume = 16 | issue = 23 | pages = 7091–104 | date = Dec 1997 | pmid = 9384587 | pmc = 1170311 | doi = 10.1093/emboj/16.23.7091 }} | ||
*{{cite journal | * {{cite journal | vauthors = Pajukanta P, Nuotio I, Terwilliger JD, Porkka KV, Ylitalo K, Pihlajamäki J, Suomalainen AJ, Syvänen AC, Lehtimäki T, Viikari JS, Laakso M, Taskinen MR, Ehnholm C, Peltonen L | title = Linkage of familial combined hyperlipidaemia to chromosome 1q21-q23 | journal = Nature Genetics | volume = 18 | issue = 4 | pages = 369–73 | date = Apr 1998 | pmid = 9537421 | doi = 10.1038/ng0498-369 }} | ||
*{{cite journal | * {{cite journal | vauthors = Hartley JL, Temple GF, Brasch MA | title = DNA cloning using in vitro site-specific recombination | journal = Genome Research | volume = 10 | issue = 11 | pages = 1788–95 | date = Nov 2000 | pmid = 11076863 | pmc = 310948 | doi = 10.1101/gr.143000 }} | ||
*{{cite journal | * {{cite journal | vauthors = Wiemann S, Weil B, Wellenreuther R, Gassenhuber J, Glassl S, Ansorge W, Böcher M, Blöcker H, Bauersachs S, Blum H, Lauber J, Düsterhöft A, Beyer A, Köhrer K, Strack N, Mewes HW, Ottenwälder B, Obermaier B, Tampe J, Heubner D, Wambutt R, Korn B, Klein M, Poustka A | title = Toward a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs | journal = Genome Research | volume = 11 | issue = 3 | pages = 422–35 | date = Mar 2001 | pmid = 11230166 | pmc = 311072 | doi = 10.1101/gr.GR1547R }} | ||
*{{cite journal | * {{cite journal | vauthors = Bengtsson SH, Madeyski-Bengtson K, Nilsson J, Bjursell G | title = Transcriptional regulation of the human carboxyl ester lipase gene in THP-1 monocytes: an E-box required for activation binds upstream stimulatory factors 1 and 2 | journal = The Biochemical Journal | volume = 365 | issue = Pt 2 | pages = 481–8 | date = Jul 2002 | pmid = 11945176 | pmc = 1222691 | doi = 10.1042/BJ20020223 }} | ||
*{{cite journal | * {{cite journal | vauthors = Villavicencio EH, Yoon JW, Frank DJ, Füchtbauer EM, Walterhouse DO, Iannaccone PM | title = Cooperative E-box regulation of human GLI1 by TWIST and USF | journal = Genesis | volume = 32 | issue = 4 | pages = 247–58 | date = Apr 2002 | pmid = 11948912 | doi = 10.1002/gene.10078 }} | ||
*{{cite journal | * {{cite journal | vauthors = Coulson JM, Edgson JL, Marshall-Jones ZV, Mulgrew R, Quinn JP, Woll PJ | title = Upstream stimulatory factor activates the vasopressin promoter via multiple motifs, including a non-canonical E-box | journal = The Biochemical Journal | volume = 369 | issue = Pt 3 | pages = 549–61 | date = Feb 2003 | pmid = 12403649 | pmc = 1223122 | doi = 10.1042/BJ20021176 }} | ||
*{{cite journal | * {{cite journal | vauthors = Salero E, Giménez C, Zafra F | title = Identification of a non-canonical E-box motif as a regulatory element in the proximal promoter region of the apolipoprotein E gene | journal = The Biochemical Journal | volume = 370 | issue = Pt 3 | pages = 979–86 | date = Mar 2003 | pmid = 12444925 | pmc = 1223214 | doi = 10.1042/BJ20021142 }} | ||
*{{cite journal | * {{cite journal | vauthors = Pickwell GV, Shih H, Quattrochi LC | title = Interaction of upstream stimulatory factor proteins with an E-box located within the human CYP1A2 5'-flanking gene contributes to basal transcriptional gene activation | journal = Biochemical Pharmacology | volume = 65 | issue = 7 | pages = 1087–96 | date = Apr 2003 | pmid = 12663044 | doi = 10.1016/S0006-2952(03)00037-6 }} | ||
*{{cite journal | |||
*{{cite journal | |||
}} | |||
{{refend}} | {{refend}} | ||
{{ | == External links == | ||
{{Transcription factors}} | * {{FactorBook|USF1}} | ||
{{PDB Gallery|geneid=7391}} | |||
{{Transcription factors|g1}} | |||
[[Category:Transcription factors]] | [[Category:Transcription factors]] | ||
Revision as of 10:01, 17 September 2017
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External IDs | GeneCards: [1] | ||||||
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Species | Human | Mouse | |||||
Entrez |
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Ensembl |
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UniProt |
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RefSeq (mRNA) |
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RefSeq (protein) |
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Location (UCSC) | n/a | n/a | |||||
PubMed search | n/a | n/a | |||||
Wikidata | |||||||
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Upstream stimulatory factor 1 is a protein that in humans is encoded by the USF1 gene.[1][2]
Function
This gene encodes a member of the basic helix-loop-helix leucine zipper family and can function as a cellular transcription factor. The encoded protein can activate transcription through pyrimidine-rich initiator (Inr) elements and E-box motifs. This gene has been linked to familial combined hyperlipidemia (FCHL). Two transcript variants encoding distinct isoforms have been identified for this gene.[2]
A study of mice suggested reduced USF1 levels increases metabolism in brown fat.[3]
Interactions
USF1 (human gene) has been shown to interact with USF2,[4][5] FOSL1[6] and GTF2I.[7][8]
References
- ↑ Shieh BH, Sparkes RS, Gaynor RB, Lusis AJ (Apr 1993). "Localization of the gene-encoding upstream stimulatory factor (USF) to human chromosome 1q22-q23". Genomics. 16 (1): 266–8. doi:10.1006/geno.1993.1174. PMID 8486371.
- ↑ 2.0 2.1 "Entrez Gene: USF1 upstream transcription factor 1".
- ↑ Laurila PP, Soronen J, Kooijman S, Forsström S, Boon MR, Surakka I, et al. (2016). "USF1 deficiency activates brown adipose tissue and improves cardiometabolic health". Science Translational Medicine. 8 (323): 323ra13. doi:10.1126/scitranslmed.aad0015. PMID 26819196.
- ↑ Ewing RM, Chu P, Elisma F, Li H, Taylor P, Climie S, McBroom-Cerajewski L, Robinson MD, O'Connor L, Li M, Taylor R, Dharsee M, Ho Y, Heilbut A, Moore L, Zhang S, Ornatsky O, Bukhman YV, Ethier M, Sheng Y, Vasilescu J, Abu-Farha M, Lambert JP, Duewel HS, Stewart II, Kuehl B, Hogue K, Colwill K, Gladwish K, Muskat B, Kinach R, Adams SL, Moran MF, Morin GB, Topaloglou T, Figeys D (2007). "Large-scale mapping of human protein-protein interactions by mass spectrometry". Molecular Systems Biology. 3 (1): 89. doi:10.1038/msb4100134. PMC 1847948. PMID 17353931.
- ↑ Viollet B, Lefrançois-Martinez AM, Henrion A, Kahn A, Raymondjean M, Martinez A (Jan 1996). "Immunochemical characterization and transacting properties of upstream stimulatory factor isoforms". The Journal of Biological Chemistry. 271 (3): 1405–15. doi:10.1074/jbc.271.3.1405. PMID 8576131.
- ↑ Pognonec P, Boulukos KE, Aperlo C, Fujimoto M, Ariga H, Nomoto A, Kato H (May 1997). "Cross-family interaction between the bHLHZip USF and bZip Fra1 proteins results in down-regulation of AP1 activity". Oncogene. 14 (17): 2091–8. doi:10.1038/sj.onc.1201046. PMID 9160889.
- ↑ Roy AL, Du H, Gregor PD, Novina CD, Martinez E, Roeder RG (Dec 1997). "Cloning of an inr- and E-box-binding protein, TFII-I, that interacts physically and functionally with USF1". The EMBO Journal. 16 (23): 7091–104. doi:10.1093/emboj/16.23.7091. PMC 1170311. PMID 9384587.
- ↑ Roy AL, Meisterernst M, Pognonec P, Roeder RG (Nov 1991). "Cooperative interaction of an initiator-binding transcription initiation factor and the helix-loop-helix activator USF". Nature. 354 (6350): 245–8. doi:10.1038/354245a0. PMID 1961251.
Further reading
- Corre S, Galibert MD (Jan 2006). "[USF as a key regulatory element of gene expression]". Médecine Sciences. 22 (1): 62–7. doi:10.1051/medsci/200622162. PMID 16386222.
- Lee JC, Lusis AJ, Pajukanta P (Apr 2006). "Familial combined hyperlipidemia: upstream transcription factor 1 and beyond". Current Opinion in Lipidology. 17 (2): 101–9. doi:10.1097/01.mol.0000217890.54875.13. PMID 16531745.
- Roy AL, Meisterernst M, Pognonec P, Roeder RG (Nov 1991). "Cooperative interaction of an initiator-binding transcription initiation factor and the helix-loop-helix activator USF". Nature. 354 (6350): 245–8. doi:10.1038/354245a0. PMID 1961251.
- Gregor PD, Sawadogo M, Roeder RG (Oct 1990). "The adenovirus major late transcription factor USF is a member of the helix-loop-helix group of regulatory proteins and binds to DNA as a dimer". Genes & Development. 4 (10): 1730–40. doi:10.1101/gad.4.10.1730. PMID 2249772.
- Henrion AA, Martinez A, Mattei MG, Kahn A, Raymondjean M (Jan 1995). "Structure, sequence, and chromosomal location of the gene for USF2 transcription factors in mouse". Genomics. 25 (1): 36–43. doi:10.1016/0888-7543(95)80107-W. PMID 7774954.
- Ferré-D'Amaré AR, Pognonec P, Roeder RG, Burley SK (Jan 1994). "Structure and function of the b/HLH/Z domain of USF". The EMBO Journal. 13 (1): 180–9. PMC 394791. PMID 8306960.
- Viollet B, Lefrançois-Martinez AM, Henrion A, Kahn A, Raymondjean M, Martinez A (Jan 1996). "Immunochemical characterization and transacting properties of upstream stimulatory factor isoforms". The Journal of Biological Chemistry. 271 (3): 1405–15. doi:10.1074/jbc.271.3.1405. PMID 8576131.
- Ghosh AK, Datta PK, Jacob ST (Feb 1997). "The dual role of helix-loop--helix-zipper protein USF in ribosomal RNA gene transcription in vivo". Oncogene. 14 (5): 589–94. doi:10.1038/sj.onc.1200866. PMID 9053857.
- Pognonec P, Boulukos KE, Aperlo C, Fujimoto M, Ariga H, Nomoto A, Kato H (May 1997). "Cross-family interaction between the bHLHZip USF and bZip Fra1 proteins results in down-regulation of AP1 activity". Oncogene. 14 (17): 2091–8. doi:10.1038/sj.onc.1201046. PMID 9160889.
- Roy AL, Du H, Gregor PD, Novina CD, Martinez E, Roeder RG (Dec 1997). "Cloning of an inr- and E-box-binding protein, TFII-I, that interacts physically and functionally with USF1". The EMBO Journal. 16 (23): 7091–104. doi:10.1093/emboj/16.23.7091. PMC 1170311. PMID 9384587.
- Pajukanta P, Nuotio I, Terwilliger JD, Porkka KV, Ylitalo K, Pihlajamäki J, Suomalainen AJ, Syvänen AC, Lehtimäki T, Viikari JS, Laakso M, Taskinen MR, Ehnholm C, Peltonen L (Apr 1998). "Linkage of familial combined hyperlipidaemia to chromosome 1q21-q23". Nature Genetics. 18 (4): 369–73. doi:10.1038/ng0498-369. PMID 9537421.
- Hartley JL, Temple GF, Brasch MA (Nov 2000). "DNA cloning using in vitro site-specific recombination". Genome Research. 10 (11): 1788–95. doi:10.1101/gr.143000. PMC 310948. PMID 11076863.
- Wiemann S, Weil B, Wellenreuther R, Gassenhuber J, Glassl S, Ansorge W, Böcher M, Blöcker H, Bauersachs S, Blum H, Lauber J, Düsterhöft A, Beyer A, Köhrer K, Strack N, Mewes HW, Ottenwälder B, Obermaier B, Tampe J, Heubner D, Wambutt R, Korn B, Klein M, Poustka A (Mar 2001). "Toward a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs". Genome Research. 11 (3): 422–35. doi:10.1101/gr.GR1547R. PMC 311072. PMID 11230166.
- Bengtsson SH, Madeyski-Bengtson K, Nilsson J, Bjursell G (Jul 2002). "Transcriptional regulation of the human carboxyl ester lipase gene in THP-1 monocytes: an E-box required for activation binds upstream stimulatory factors 1 and 2". The Biochemical Journal. 365 (Pt 2): 481–8. doi:10.1042/BJ20020223. PMC 1222691. PMID 11945176.
- Villavicencio EH, Yoon JW, Frank DJ, Füchtbauer EM, Walterhouse DO, Iannaccone PM (Apr 2002). "Cooperative E-box regulation of human GLI1 by TWIST and USF". Genesis. 32 (4): 247–58. doi:10.1002/gene.10078. PMID 11948912.
- Coulson JM, Edgson JL, Marshall-Jones ZV, Mulgrew R, Quinn JP, Woll PJ (Feb 2003). "Upstream stimulatory factor activates the vasopressin promoter via multiple motifs, including a non-canonical E-box". The Biochemical Journal. 369 (Pt 3): 549–61. doi:10.1042/BJ20021176. PMC 1223122. PMID 12403649.
- Salero E, Giménez C, Zafra F (Mar 2003). "Identification of a non-canonical E-box motif as a regulatory element in the proximal promoter region of the apolipoprotein E gene". The Biochemical Journal. 370 (Pt 3): 979–86. doi:10.1042/BJ20021142. PMC 1223214. PMID 12444925.
- Pickwell GV, Shih H, Quattrochi LC (Apr 2003). "Interaction of upstream stimulatory factor proteins with an E-box located within the human CYP1A2 5'-flanking gene contributes to basal transcriptional gene activation". Biochemical Pharmacology. 65 (7): 1087–96. doi:10.1016/S0006-2952(03)00037-6. PMID 12663044.