ATBF1: Difference between revisions

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Latest revision as of 18:21, 29 August 2017

Zinc finger homeobox protein 3 is a protein that in humans is encoded by the ZFHX3 gene.^[1]^[2]^[3]

References

↑ Morinaga T, Yasuda H, Hashimoto T, Higashio K, Tamaoki T (Dec 1991). "A human alpha-fetoprotein enhancer-binding protein, ATBF1, contains four homeodomains and seventeen zinc fingers". Mol Cell Biol. 11 (12): 6041–9. PMC 361769. PMID 1719379.
↑ Miura Y, Tam T, Ido A, Morinaga T, Miki T, Hashimoto T, Tamaoki T (Dec 1995). "Cloning and characterization of an ATBF1 isoform that expresses in a neuronal differentiation-dependent manner". J Biol Chem. 270 (45): 26840–8. doi:10.1074/jbc.270.45.26840. PMID 7592926.
↑ "Entrez Gene: ATBF1 AT-binding transcription factor 1".

Yamada K, Miura Y, Scheidl T, et al. (1996). "Assignment of the human ATBF1 transcription factor gene to chromosome 16q22.3-q23.1". Genomics. 29 (2): 552–3. doi:10.1006/geno.1995.9967. PMID 8666409.
Bedford MT, Chan DC, Leder P (1997). "FBP WW domains and the Abl SH3 domain bind to a specific class of proline-rich ligands". EMBO J. 16 (9): 2376–83. doi:10.1093/emboj/16.9.2376. PMC 1169838. PMID 9171351.
Kaspar P, Dvoráková M, Králová J, et al. (1999). "Myb-interacting protein, ATBF1, represses transcriptional activity of Myb oncoprotein". J. Biol. Chem. 274 (20): 14422–8. doi:10.1074/jbc.274.20.14422. PMID 10318867.
Loftus BJ, Kim UJ, Sneddon VP, et al. (1999). "Genome duplications and other features in 12 Mb of DNA sequence from human chromosome 16p and 16q". Genomics. 60 (3): 295–308. doi:10.1006/geno.1999.5927. PMID 10493829.
Kaushik N, Malaspina A, de Belleroche J (2000). "Characterization of trinucleotide- and tandem repeat-containing transcripts obtained from human spinal cord cDNA library by high-density filter hybridization". DNA Cell Biol. 19 (5): 265–73. doi:10.1089/10445490050021177. PMID 10855793.
Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. doi:10.1073/pnas.242603899. PMC 139241. PMID 12477932.
Iida M, Imura J, Furuichi T, et al. (2004). "Alteration of the AT motif binding factor-1 expression in alpha-fetoprotein producing gastric cancer: is it an event for differentiation and proliferation of the tumors?". Oncol. Rep. 11 (1): 3–7. doi:10.3892/or.11.1.3. PMID 14654895.
Nojiri S, Joh T, Miura Y, et al. (2004). "ATBF1 enhances the suppression of STAT3 signaling by interaction with PIAS3". Biochem. Biophys. Res. Commun. 314 (1): 97–103. doi:10.1016/j.bbrc.2003.12.054. PMID 14715251.
Martin J, Han C, Gordon LA, et al. (2005). "The sequence and analysis of duplication-rich human chromosome 16". Nature. 432 (7020): 988–94. doi:10.1038/nature03187. PMID 15616553.
Zhang Z, Yamashita H, Toyama T, et al. (2005). "ATBF1-a messenger RNA expression is correlated with better prognosis in breast cancer". Clin. Cancer Res. 11 (1): 193–8. PMID 15671546.
Sun X, Frierson HF, Chen C, et al. (2005). "Frequent somatic mutations of the transcription factor ATBF1 in human prostate cancer". Nat. Genet. 37 (4): 407–12. doi:10.1038/ng1528. PMID 15750593.
Rual JF, Venkatesan K, Hao T, et al. (2005). "Towards a proteome-scale map of the human protein-protein interaction network". Nature. 437 (7062): 1173–8. doi:10.1038/nature04209. PMID 16189514.
Xu J, Sauvageot J, Ewing CM, et al. (2006). "Germline ATBF1 mutations and prostate cancer risk". Prostate. 66 (10): 1082–5. doi:10.1002/pros.20430. PMID 16637072.
Sun X, Zhou Y, Otto KB, et al. (2007). "Infrequent mutation of ATBF1 in human breast cancer". J. Cancer Res. Clin. Oncol. 133 (2): 103–5. doi:10.1007/s00432-006-0148-y. PMID 16932943.
Olsen JV, Blagoev B, Gnad F, et al. (2006). "Global, in vivo, and site-specific phosphorylation dynamics in signaling networks". Cell. 127 (3): 635–48. doi:10.1016/j.cell.2006.09.026. PMID 17081983.
Mori Y, Kataoka H, Miura Y, et al. (2007). "Subcellular localization of ATBF1 regulates MUC5AC transcription in gastric cancer". Int. J. Cancer. 121 (2): 241–7. doi:10.1002/ijc.22654. PMID 17330845.
Cho YG, Song JH, Kim CJ, et al. (2007). "Genetic alterations of the ATBF1 gene in gastric cancer". Clin. Cancer Res. 13 (15 Pt 1): 4355–9. doi:10.1158/1078-0432.CCR-07-0619. PMID 17671116.

External links

ATBF1+protein,+human at the US National Library of Medicine Medical Subject Headings (MeSH)
Human ZFHX3 genome location and ZFHX3 gene details page in the UCSC Genome Browser.

This article on a gene on human chromosome 16 is a stub. You can help Wikipedia by expanding it.

[pmid1719379-1] Morinaga T, Yasuda H, Hashimoto T, Higashio K, Tamaoki T (Dec 1991). "A human alpha-fetoprotein enhancer-binding protein, ATBF1, contains four homeodomains and seventeen zinc fingers". Mol Cell Biol. 11 (12): 6041–9. PMC 361769. PMID 1719379.

[pmid7592926-2] Miura Y, Tam T, Ido A, Morinaga T, Miki T, Hashimoto T, Tamaoki T (Dec 1995). "Cloning and characterization of an ATBF1 isoform that expresses in a neuronal differentiation-dependent manner". J Biol Chem. 270 (45): 26840–8. doi:10.1074/jbc.270.45.26840. PMID 7592926.

[entrez-3] "Entrez Gene: ATBF1 AT-binding transcription factor 1".

[1]

[2]

[3]

@@ Line 1: / Line 1: @@
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+{{Infobox_gene}}
-{{PBB_Controls
+'''Zinc finger homeobox protein 3''' is a [[protein]] that in humans is encoded by the ''ZFHX3'' [[gene]].<ref name="pmid1719379">{{cite journal | vauthors = Morinaga T, Yasuda H, Hashimoto T, Higashio K, Tamaoki T | title = A human alpha-fetoprotein enhancer-binding protein, ATBF1, contains four homeodomains and seventeen zinc fingers | journal = Mol Cell Biol | volume = 11 | issue = 12 | pages = 6041–9 |date=Dec 1991 | pmid = 1719379 | pmc = 361769 | doi =  }}</ref><ref name="pmid7592926">{{cite journal | vauthors = Miura Y, Tam T, Ido A, Morinaga T, Miki T, Hashimoto T, Tamaoki T | title = Cloning and characterization of an ATBF1 isoform that expresses in a neuronal differentiation-dependent manner | journal = J Biol Chem | volume = 270 | issue = 45 | pages = 26840–8 |date=Dec 1995 | pmid = 7592926 | pmc =  | doi =10.1074/jbc.270.45.26840  }}</ref><ref name="entrez">{{cite web | title = Entrez Gene: ATBF1 AT-binding transcription factor 1| url = https://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=463| accessdate = }}</ref>
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- | image = PBB_Protein_ATBF1_image.jpg
- | image_source = [[Protein_Data_Bank|PDB]] rendering based on 2da1.
- | PDB = {{PDB2|2da1}}, {{PDB2|2da2}}, {{PDB2|2da3}}
- | Name = AT-binding transcription factor 1
- | HGNCid = 777
- | Symbol = ATBF1
- | AltSymbols =; ATBT; ZFHX3
- | OMIM = 104155
- | ECnumber =
- | Homologene = 21366
- | MGIid = 99948
- | GeneAtlas_image1 = PBB_GE_ATBF1_208033_s_at_tn.png
- | Function = {{GNF_GO|id=GO:0003705 |text = RNA polymerase II transcription factor activity, enhancer binding}} {{GNF_GO|id=GO:0008270 |text = zinc ion binding}} {{GNF_GO|id=GO:0043565 |text = sequence-specific DNA binding}} {{GNF_GO|id=GO:0046872 |text = metal ion binding}}
- | Component = {{GNF_GO|id=GO:0005622 |text = intracellular}} {{GNF_GO|id=GO:0005634 |text = nucleus}} {{GNF_GO|id=GO:0005739 |text = mitochondrion}}
- | Process = {{GNF_GO|id=GO:0006355 |text = regulation of transcription, DNA-dependent}} {{GNF_GO|id=GO:0006366 |text = transcription from RNA polymerase II promoter}}
- | Orthologs = {{GNF_Ortholog_box
-    | Hs_EntrezGene = 463
-    | Hs_Ensembl = ENSG00000140836
-    | Hs_RefseqProtein = NP_008816
-    | Hs_RefseqmRNA = NM_006885
-    | Hs_GenLoc_db =
-    | Hs_GenLoc_chr = 16
-    | Hs_GenLoc_start = 71378464
-    | Hs_GenLoc_end = 71639775
-    | Hs_Uniprot = Q15911
-    | Mm_EntrezGene = 11906
-    | Mm_Ensembl = ENSMUSG00000038872
-    | Mm_RefseqmRNA = NM_007496
-    | Mm_RefseqProtein = NP_031522
-    | Mm_GenLoc_db =
-    | Mm_GenLoc_chr = 8
-    | Mm_GenLoc_start = 111603773
-    | Mm_GenLoc_end = 111846367
-    | Mm_Uniprot = Q5DTG5
-  }}
-}}
-'''AT-binding transcription factor 1''', also known as '''ATBF1''', is a human [[gene]].<ref name="entrez">{{cite web | title = Entrez Gene: ATBF1 AT-binding transcription factor 1| url = http://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=463| accessdate = }}</ref>
 <!-- The PBB_Summary template is automatically maintained by Protein Box Bot.  See Template:PBB_Controls to Stop updates. -->
 {{PBB_Summary
@@ Line 55: / Line 8: @@
 ==References==
-{{reflist|2}}
+{{reflist}}
 ==Further reading==
 {{refbegin | 2}}
 {{PBB_Further_reading
 | citations =
-*{{cite journal  | author=Morinaga T, Yasuda H, Hashimoto T, ''et al.'' |title=A human alpha-fetoprotein enhancer-binding protein, ATBF1, contains four homeodomains and seventeen zinc fingers. |journal=Mol. Cell. Biol. |volume=11 |issue= 12 |pages= 6041-9 |year= 1991 |pmid= 1719379 |doi=  }}
+*{{cite journal  | vauthors=Yamada K, Miura Y, Scheidl T |title=Assignment of the human ATBF1 transcription factor gene to chromosome 16q22.3-q23.1 |journal=Genomics |volume=29 |issue= 2 |pages= 552–3 |year= 1996 |pmid= 8666409 |doi= 10.1006/geno.1995.9967 |display-authors=etal}}
-*{{cite journal  | author=Miura Y, Tam T, Ido A, ''et al.'' |title=Cloning and characterization of an ATBF1 isoform that expresses in a neuronal differentiation-dependent manner. |journal=J. Biol. Chem. |volume=270 |issue= 45 |pages= 26840-8 |year= 1995 |pmid= 7592926 |doi=  }}
+*{{cite journal  | vauthors=Bedford MT, Chan DC, Leder P |title=FBP WW domains and the Abl SH3 domain bind to a specific class of proline-rich ligands |journal=EMBO J. |volume=16 |issue= 9 |pages= 2376–83 |year= 1997 |pmid= 9171351 |doi= 10.1093/emboj/16.9.2376  | pmc=1169838 }}
-*{{cite journal  | author=Yamada K, Miura Y, Scheidl T, ''et al.'' |title=Assignment of the human ATBF1 transcription factor gene to chromosome 16q22.3-q23.1. |journal=Genomics |volume=29 |issue= 2 |pages= 552-3 |year= 1996 |pmid= 8666409 |doi= 10.1006/geno.1995.9967 }}
+*{{cite journal  | vauthors=Kaspar P, Dvoráková M, Králová J |title=Myb-interacting protein, ATBF1, represses transcriptional activity of Myb oncoprotein |journal=J. Biol. Chem. |volume=274 |issue= 20 |pages= 14422–8 |year= 1999 |pmid= 10318867 |doi=10.1074/jbc.274.20.14422  |display-authors=etal}}
-*{{cite journal  | author=Bedford MT, Chan DC, Leder P |title=FBP WW domains and the Abl SH3 domain bind to a specific class of proline-rich ligands. |journal=EMBO J. |volume=16 |issue= 9 |pages= 2376-83 |year= 1997 |pmid= 9171351 |doi= 10.1093/emboj/16.9.2376 }}
+*{{cite journal  | vauthors=Loftus BJ, Kim UJ, Sneddon VP |title=Genome duplications and other features in 12 Mb of DNA sequence from human chromosome 16p and 16q |journal=Genomics |volume=60 |issue= 3 |pages= 295–308 |year= 1999 |pmid= 10493829 |doi= 10.1006/geno.1999.5927 |display-authors=etal}}
-*{{cite journal  | author=Kaspar P, Dvoráková M, Králová J, ''et al.'' |title=Myb-interacting protein, ATBF1, represses transcriptional activity of Myb oncoprotein. |journal=J. Biol. Chem. |volume=274 |issue= 20 |pages= 14422-8 |year= 1999 |pmid= 10318867 |doi=  }}
+*{{cite journal  | vauthors=Kaushik N, Malaspina A, de Belleroche J |title=Characterization of trinucleotide- and tandem repeat-containing transcripts obtained from human spinal cord cDNA library by high-density filter hybridization |journal=DNA Cell Biol. |volume=19 |issue= 5 |pages= 265–73 |year= 2000 |pmid= 10855793 |doi= 10.1089/10445490050021177 }}
-*{{cite journal  | author=Loftus BJ, Kim UJ, Sneddon VP, ''et al.'' |title=Genome duplications and other features in 12 Mb of DNA sequence from human chromosome 16p and 16q. |journal=Genomics |volume=60 |issue= 3 |pages= 295-308 |year= 1999 |pmid= 10493829 |doi= 10.1006/geno.1999.5927 }}
+*{{cite journal  | vauthors=Strausberg RL, Feingold EA, Grouse LH |title=Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences |journal=Proc. Natl. Acad. Sci. U.S.A. |volume=99 |issue= 26 |pages= 16899–903 |year= 2003 |pmid= 12477932 |doi= 10.1073/pnas.242603899  | pmc=139241 |display-authors=etal}}
-*{{cite journal  | author=Kaushik N, Malaspina A, de Belleroche J |title=Characterization of trinucleotide- and tandem repeat-containing transcripts obtained from human spinal cord cDNA library by high-density filter hybridization. |journal=DNA Cell Biol. |volume=19 |issue= 5 |pages= 265-73 |year= 2000 |pmid= 10855793 |doi= 10.1089/10445490050021177 }}
+*{{cite journal  | vauthors=Iida M, Imura J, Furuichi T |title=Alteration of the AT motif binding factor-1 expression in alpha-fetoprotein producing gastric cancer: is it an event for differentiation and proliferation of the tumors? |journal=Oncol. Rep. |volume=11 |issue= 1 |pages= 3–7 |year= 2004 |pmid= 14654895 |doi=  10.3892/or.11.1.3|display-authors=etal}}
-*{{cite journal  | author=Strausberg RL, Feingold EA, Grouse LH, ''et al.'' |title=Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. |journal=Proc. Natl. Acad. Sci. U.S.A. |volume=99 |issue= 26 |pages= 16899-903 |year= 2003 |pmid= 12477932 |doi= 10.1073/pnas.242603899 }}
+*{{cite journal  | vauthors=Nojiri S, Joh T, Miura Y |title=ATBF1 enhances the suppression of STAT3 signaling by interaction with PIAS3 |journal=Biochem. Biophys. Res. Commun. |volume=314 |issue= 1 |pages= 97–103 |year= 2004 |pmid= 14715251 |doi=10.1016/j.bbrc.2003.12.054  |display-authors=etal}}
-*{{cite journal  | author=Iida M, Imura J, Furuichi T, ''et al.'' |title=Alteration of the AT motif binding factor-1 expression in alpha-fetoprotein producing gastric cancer: is it an event for differentiation and proliferation of the tumors? |journal=Oncol. Rep. |volume=11 |issue= 1 |pages= 3-7 |year= 2004 |pmid= 14654895 |doi=  }}
+*{{cite journal  | vauthors=Martin J, Han C, Gordon LA |title=The sequence and analysis of duplication-rich human chromosome 16 |journal=Nature |volume=432 |issue= 7020 |pages= 988–94 |year= 2005 |pmid= 15616553 |doi= 10.1038/nature03187 |display-authors=etal}}
-*{{cite journal  | author=Nojiri S, Joh T, Miura Y, ''et al.'' |title=ATBF1 enhances the suppression of STAT3 signaling by interaction with PIAS3. |journal=Biochem. Biophys. Res. Commun. |volume=314 |issue= 1 |pages= 97-103 |year= 2004 |pmid= 14715251 |doi=  }}
+*{{cite journal  | vauthors=Zhang Z, Yamashita H, Toyama T |title=ATBF1-a messenger RNA expression is correlated with better prognosis in breast cancer |journal=Clin. Cancer Res. |volume=11 |issue= 1 |pages= 193–8 |year= 2005 |pmid= 15671546 |doi=  |display-authors=etal}}
-*{{cite journal  | author=Martin J, Han C, Gordon LA, ''et al.'' |title=The sequence and analysis of duplication-rich human chromosome 16. |journal=Nature |volume=432 |issue= 7020 |pages= 988-94 |year= 2005 |pmid= 15616553 |doi= 10.1038/nature03187 }}
+*{{cite journal  | vauthors=Sun X, Frierson HF, Chen C |title=Frequent somatic mutations of the transcription factor ATBF1 in human prostate cancer |journal=Nat. Genet. |volume=37 |issue= 4 |pages= 407–12 |year= 2005 |pmid= 15750593 |doi= 10.1038/ng1528 |display-authors=etal}}
-*{{cite journal  | author=Zhang Z, Yamashita H, Toyama T, ''et al.'' |title=ATBF1-a messenger RNA expression is correlated with better prognosis in breast cancer. |journal=Clin. Cancer Res. |volume=11 |issue= 1 |pages= 193-8 |year= 2005 |pmid= 15671546 |doi=  }}
+*{{cite journal  | vauthors=Rual JF, Venkatesan K, Hao T |title=Towards a proteome-scale map of the human protein-protein interaction network |journal=Nature |volume=437 |issue= 7062 |pages= 1173–8 |year= 2005 |pmid= 16189514 |doi= 10.1038/nature04209 |display-authors=etal}}
-*{{cite journal  | author=Sun X, Frierson HF, Chen C, ''et al.'' |title=Frequent somatic mutations of the transcription factor ATBF1 in human prostate cancer. |journal=Nat. Genet. |volume=37 |issue= 4 |pages= 407-12 |year= 2005 |pmid= 15750593 |doi= 10.1038/ng1528 }}
+*{{cite journal  | vauthors=Xu J, Sauvageot J, Ewing CM |title=Germline ATBF1 mutations and prostate cancer risk |journal=Prostate |volume=66 |issue= 10 |pages= 1082–5 |year= 2006 |pmid= 16637072 |doi= 10.1002/pros.20430 |display-authors=etal}}
-*{{cite journal  | author=Rual JF, Venkatesan K, Hao T, ''et al.'' |title=Towards a proteome-scale map of the human protein-protein interaction network. |journal=Nature |volume=437 |issue= 7062 |pages= 1173-8 |year= 2005 |pmid= 16189514 |doi= 10.1038/nature04209 }}
+*{{cite journal  | vauthors=Sun X, Zhou Y, Otto KB |title=Infrequent mutation of ATBF1 in human breast cancer |journal=J. Cancer Res. Clin. Oncol. |volume=133 |issue= 2 |pages= 103–5 |year= 2007 |pmid= 16932943 |doi= 10.1007/s00432-006-0148-y |display-authors=etal}}
-*{{cite journal  | author=Xu J, Sauvageot J, Ewing CM, ''et al.'' |title=Germline ATBF1 mutations and prostate cancer risk. |journal=Prostate |volume=66 |issue= 10 |pages= 1082-5 |year= 2006 |pmid= 16637072 |doi= 10.1002/pros.20430 }}
+*{{cite journal  | vauthors=Olsen JV, Blagoev B, Gnad F |title=Global, in vivo, and site-specific phosphorylation dynamics in signaling networks |journal=Cell |volume=127 |issue= 3 |pages= 635–48 |year= 2006 |pmid= 17081983 |doi= 10.1016/j.cell.2006.09.026 |display-authors=etal}}
-*{{cite journal  | author=Sun X, Zhou Y, Otto KB, ''et al.'' |title=Infrequent mutation of ATBF1 in human breast cancer. |journal=J. Cancer Res. Clin. Oncol. |volume=133 |issue= 2 |pages= 103-5 |year= 2007 |pmid= 16932943 |doi= 10.1007/s00432-006-0148-y }}
+*{{cite journal  | vauthors=Mori Y, Kataoka H, Miura Y |title=Subcellular localization of ATBF1 regulates MUC5AC transcription in gastric cancer |journal=Int. J. Cancer |volume=121 |issue= 2 |pages= 241–7 |year= 2007 |pmid= 17330845 |doi= 10.1002/ijc.22654 |display-authors=etal}}
-*{{cite journal  | author=Olsen JV, Blagoev B, Gnad F, ''et al.'' |title=Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. |journal=Cell |volume=127 |issue= 3 |pages= 635-48 |year= 2006 |pmid= 17081983 |doi= 10.1016/j.cell.2006.09.026 }}
+*{{cite journal  | vauthors=Cho YG, Song JH, Kim CJ |title=Genetic alterations of the ATBF1 gene in gastric cancer |journal=Clin. Cancer Res. |volume=13 |issue= 15 Pt 1 |pages= 4355–9 |year= 2007 |pmid= 17671116 |doi= 10.1158/1078-0432.CCR-07-0619 |display-authors=etal}}
-*{{cite journal  | author=Mori Y, Kataoka H, Miura Y, ''et al.'' |title=Subcellular localization of ATBF1 regulates MUC5AC transcription in gastric cancer. |journal=Int. J. Cancer |volume=121 |issue= 2 |pages= 241-7 |year= 2007 |pmid= 17330845 |doi= 10.1002/ijc.22654 }}
-*{{cite journal  | author=Cho YG, Song JH, Kim CJ, ''et al.'' |title=Genetic alterations of the ATBF1 gene in gastric cancer. |journal=Clin. Cancer Res. |volume=13 |issue= 15 Pt 1 |pages= 4355-9 |year= 2007 |pmid= 17671116 |doi= 10.1158/1078-0432.CCR-07-0619 }}
 }}
 {{refend}}
@@ Line 84: / Line 36: @@
 == External links ==
 * {{MeshName|ATBF1+protein,+human}}
+* {{UCSC gene info|ZFHX3}}
+{{PDB Gallery|geneid=463}}
+{{Transcription factors|g2}}
+<!-- The PBB_Controls template provides controls for Protein Box Bot, please see Template:PBB_Controls for details. -->
+{{PBB_Controls
+| update_page = yes
+| require_manual_inspection = no
+| update_protein_box = yes
+| update_summary = yes
+| update_citations = yes
+}}
-{{protein-stub}}
-{{Transcription factors}}
 [[Category:Transcription factors]]
-{{WikiDoc Sources}}
+{{gene-16-stub}}

ATBF1: Difference between revisions

Latest revision as of 18:21, 29 August 2017

References

Further reading

External links

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