GABPA: Difference between revisions

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{{Infobox_gene}}
{{PBB_Controls
'''GA-binding protein alpha chain''' is a [[protein]] that in humans is encoded by the ''GABPA'' [[gene]].<ref name="pmid8441384">{{cite journal | vauthors = Watanabe H, Sawada J, Yano K, Yamaguchi K, Goto M, Handa H | title = cDNA cloning of transcription factor E4TF1 subunits with Ets and notch motifs | journal = Molecular and Cellular Biology | volume = 13 | issue = 3 | pages = 1385–91 | date = Mar 1993 | pmid = 8441384 | pmc = 359448 | doi = }}</ref>
| update_page = yes
| require_manual_inspection = no
| update_protein_box = yes
| update_summary = yes
| update_citations = yes
}}


<!-- The GNF_Protein_box is automatically maintained by Protein Box Bot.  See Template:PBB_Controls to Stop updates. -->
== Function ==
{{GNF_Protein_box
| image = PBB_Protein_GABPA_image.jpg
| image_source = [[Protein_Data_Bank|PDB]] rendering based on 1awc.
| PDB = {{PDB2|1awc}}, {{PDB2|1sxd}}
| Name = GA binding protein transcription factor, alpha subunit 60kDa
| HGNCid = 4071
| Symbol = GABPA
| AltSymbols =; E4TF1-60; E4TF1A; NFT2; NRF2; NRF2A
| OMIM = 600609
| ECnumber = 
| Homologene = 1543
| MGIid = 95610
| GeneAtlas_image1 = PBB_GE_GABPA_210188_at_tn.png
| Function = {{GNF_GO|id=GO:0003700 |text = transcription factor activity}} {{GNF_GO|id=GO:0003702 |text = RNA polymerase II transcription factor activity}} {{GNF_GO|id=GO:0003713 |text = transcription coactivator activity}} {{GNF_GO|id=GO:0005515 |text = protein binding}} {{GNF_GO|id=GO:0043565 |text = sequence-specific DNA binding}}
| Component = {{GNF_GO|id=GO:0005634 |text = nucleus}}
| Process = {{GNF_GO|id=GO:0006350 |text = transcription}} {{GNF_GO|id=GO:0006355 |text = regulation of transcription, DNA-dependent}} {{GNF_GO|id=GO:0006366 |text = transcription from RNA polymerase II promoter}}
| Orthologs = {{GNF_Ortholog_box
    | Hs_EntrezGene = 2551
    | Hs_Ensembl = ENSG00000154727
    | Hs_RefseqProtein = NP_002031
    | Hs_RefseqmRNA = NM_002040
    | Hs_GenLoc_db = 
    | Hs_GenLoc_chr = 21
    | Hs_GenLoc_start = 26028752
    | Hs_GenLoc_end = 26066641
    | Hs_Uniprot = Q06546
    | Mm_EntrezGene = 14390
    | Mm_Ensembl = ENSMUSG00000008976
    | Mm_RefseqmRNA = NM_008065
    | Mm_RefseqProtein = NP_032091
    | Mm_GenLoc_db = 
    | Mm_GenLoc_chr = 16
    | Mm_GenLoc_start = 84717716
    | Mm_GenLoc_end = 84746371
    | Mm_Uniprot = Q6HAA1
  }}
}}
'''GA binding protein transcription factor, alpha subunit 60kDa''', also known as '''GABPA''', is a human [[gene]].


<!-- The PBB_Summary template is automatically maintained by Protein Box Bot.  See Template:PBB_Controls to Stop updates. -->
This gene encodes one of three GA-binding protein transcription factor subunits which functions as a DNA-binding subunit.  Since this subunit shares identity with a subunit encoding the nuclear respiratory factor 2 gene, it is likely involved in activation of cytochrome oxidase expression and nuclear control of mitochondrial function.  This subunit also shares identity with a subunit constituting the transcription factor E4TF1, responsible for expression of the adenovirus E4 gene.  Because of its chromosomal localization and ability to form heterodimers with other polypeptides, this gene may play a role in the Down Syndrome phenotype.<ref name="entrez">{{cite web | title = Entrez Gene: GABPA GA binding protein transcription factor, alpha subunit 60kDa| url = https://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=2551| accessdate = }}</ref>
{{PBB_Summary
| section_title =
| summary_text = This gene encodes one of three GA-binding protein transcription factor subunits which functions as a DNA-binding subunit.  Since this subunit shares identity with a subunit encoding the nuclear respiratory factor 2 gene, it is likely involved in activation of cytochrome oxidase expression and nuclear control of mitochondrial function.  This subunit also shares identity with a subunit constituting the transcription factor E4TF1, responsible for expression of the adenovirus E4 gene.  Because of its chromosomal localization and ability to form heterodimers with other polypeptides, this gene may play a role in the Down Syndrome phenotype.<ref name="entrez">{{cite web | title = Entrez Gene: GABPA GA binding protein transcription factor, alpha subunit 60kDa| url = http://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=2551| accessdate = }}</ref>
}}


==References==
== Interactions ==
{{reflist|2}}


==Further reading==
GABPA has been shown to [[Protein-protein interaction|interact]] with [[Host cell factor C1]],<ref name=pmid10675337>{{cite journal | vauthors = Vogel JL, Kristie TM | title = The novel coactivator C1 (HCF) coordinates multiprotein enhancer formation and mediates transcription activation by GABP | journal = The EMBO Journal | volume = 19 | issue = 4 | pages = 683–90 | date = Feb 2000 | pmid = 10675337 | pmc = 305606 | doi = 10.1093/emboj/19.4.683 }}</ref> [[Sp1 transcription factor]]<ref name=pmid11237613>{{cite journal | vauthors = Galvagni F, Capo S, Oliviero S | title = Sp1 and Sp3 physically interact and co-operate with GABP for the activation of the utrophin promoter | journal = Journal of Molecular Biology | volume = 306 | issue = 5 | pages = 985–96 | date = Mar 2001 | pmid = 11237613 | doi = 10.1006/jmbi.2000.4335 }}</ref> and [[Sp3 transcription factor]].<ref name=pmid11237613/>
 
== References ==
{{reflist}}
 
== Further reading ==
{{refbegin | 2}}
{{refbegin | 2}}
{{PBB_Further_reading
* {{cite journal | vauthors = Chrast R, Chen H, Morris MA, Antonarakis SE | title = Mapping of the human transcription factor GABPA (E4TF1-60) gene to chromosome 21 | journal = Genomics | volume = 28 | issue = 1 | pages = 119–22 | date = Jul 1995 | pmid = 7590737 | doi = 10.1006/geno.1995.1117 }}
| citations =
* {{cite journal | vauthors = Sawada J, Goto M, Watanabe H, Handa H, Yoshida MC | title = Regional mapping of two subunits of transcription factor E4TF1 to human chromosome | journal = Japanese Journal of Cancer Research | volume = 86 | issue = 1 | pages = 10–2 | date = Jan 1995 | pmid = 7737900 | doi = 10.1111/j.1349-7006.1995.tb02981.x }}
*{{cite journal | author=Chrast R, Chen H, Morris MA, Antonarakis SE |title=Mapping of the human transcription factor GABPA (E4TF1-60) gene to chromosome 21. |journal=Genomics |volume=28 |issue= 1 |pages= 119-22 |year= 1995 |pmid= 7590737 |doi= 10.1006/geno.1995.1117 }}
* {{cite journal | vauthors = Gugneja S, Virbasius JV, Scarpulla RC | title = Four structurally distinct, non-DNA-binding subunits of human nuclear respiratory factor 2 share a conserved transcriptional activation domain | journal = Molecular and Cellular Biology | volume = 15 | issue = 1 | pages = 102–11 | date = Jan 1995 | pmid = 7799916 | pmc = 231915 | doi =  }}
*{{cite journal | author=Sawada J, Goto M, Watanabe H, ''et al.'' |title=Regional mapping of two subunits of transcription factor E4TF1 to human chromosome. |journal=Jpn. J. Cancer Res. |volume=86 |issue= 1 |pages= 10-2 |year= 1995 |pmid= 7737900 |doi= }}
* {{cite journal | vauthors = Maruyama K, Sugano S | title = Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides | journal = Gene | volume = 138 | issue = 1-2 | pages = 171–4 | date = Jan 1994 | pmid = 8125298 | doi = 10.1016/0378-1119(94)90802-8 }}
*{{cite journal | author=Gugneja S, Virbasius JV, Scarpulla RC |title=Four structurally distinct, non-DNA-binding subunits of human nuclear respiratory factor 2 share a conserved transcriptional activation domain. |journal=Mol. Cell. Biol. |volume=15 |issue= 1 |pages= 102-11 |year= 1995 |pmid= 7799916 |doi=  }}
* {{cite journal | vauthors = Goto M, Shimizu T, Sawada J, Sawa C, Watanabe H, Ichikawa H, Ohira M, Ohki M, Handa H | title = Assignment of the E4TF1-60 gene to human chromosome 21q21.2-q21.3 | journal = Gene | volume = 166 | issue = 2 | pages = 337–8 | date = Dec 1995 | pmid = 8543189 | doi = 10.1016/0378-1119(95)00575-7 }}
*{{cite journal | author=Maruyama K, Sugano S |title=Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides. |journal=Gene |volume=138 |issue= 1-2 |pages= 171-4 |year= 1994 |pmid= 8125298 |doi= }}
* {{cite journal | vauthors = Sawa C, Goto M, Suzuki F, Watanabe H, Sawada J, Handa H | title = Functional domains of transcription factor hGABP beta1/E4TF1-53 required for nuclear localization and transcription activation | journal = Nucleic Acids Research | volume = 24 | issue = 24 | pages = 4954–61 | date = Dec 1996 | pmid = 9016666 | pmc = 146336 | doi = 10.1093/nar/24.24.4954 }}
*{{cite journal | author=Watanabe H, Sawada J, Yano K, ''et al.'' |title=cDNA cloning of transcription factor E4TF1 subunits with Ets and notch motifs. |journal=Mol. Cell. Biol. |volume=13 |issue= 3 |pages= 1385-91 |year= 1993 |pmid= 8441384 |doi= }}
* {{cite journal | vauthors = Suzuki Y, Yoshitomo-Nakagawa K, Maruyama K, Suyama A, Sugano S | title = Construction and characterization of a full length-enriched and a 5'-end-enriched cDNA library | journal = Gene | volume = 200 | issue = 1-2 | pages = 149–56 | date = Oct 1997 | pmid = 9373149 | doi = 10.1016/S0378-1119(97)00411-3 }}
*{{cite journal | author=Goto M, Shimizu T, Sawada J, ''et al.'' |title=Assignment of the E4TF1-60 gene to human chromosome 21q21.2-q21.3. |journal=Gene |volume=166 |issue= 2 |pages= 337-8 |year= 1996 |pmid= 8543189 |doi= }}
* {{cite journal | vauthors = Batchelor AH, Piper DE, de la Brousse FC, McKnight SL, Wolberger C | title = The structure of GABPalpha/beta: an ETS domain- ankyrin repeat heterodimer bound to DNA | journal = Science | volume = 279 | issue = 5353 | pages = 1037–41 | date = Feb 1998 | pmid = 9461436 | doi = 10.1126/science.279.5353.1037 }}
*{{cite journal | author=Sawa C, Goto M, Suzuki F, ''et al.'' |title=Functional domains of transcription factor hGABP beta1/E4TF1-53 required for nuclear localization and transcription activation. |journal=Nucleic Acids Res. |volume=24 |issue= 24 |pages= 4954-61 |year= 1997 |pmid= 9016666 |doi= }}
* {{cite journal | vauthors = Suzuki F, Goto M, Sawa C, Ito S, Watanabe H, Sawada J, Handa H | title = Functional interactions of transcription factor human GA-binding protein subunits | journal = The Journal of Biological Chemistry | volume = 273 | issue = 45 | pages = 29302–8 | date = Nov 1998 | pmid = 9792629 | doi = 10.1074/jbc.273.45.29302 }}
*{{cite journal | author=Suzuki Y, Yoshitomo-Nakagawa K, Maruyama K, ''et al.'' |title=Construction and characterization of a full length-enriched and a 5'-end-enriched cDNA library. |journal=Gene |volume=200 |issue= 1-2 |pages= 149-56 |year= 1997 |pmid= 9373149 |doi= }}
* {{cite journal | vauthors = Itoh K, Wakabayashi N, Katoh Y, Ishii T, Igarashi K, Engel JD, Yamamoto M | title = Keap1 represses nuclear activation of antioxidant responsive elements by Nrf2 through binding to the amino-terminal Neh2 domain | journal = Genes & Development | volume = 13 | issue = 1 | pages = 76–86 | date = Jan 1999 | pmid = 9887101 | pmc = 316370 | doi = 10.1101/gad.13.1.76 }}
*{{cite journal | author=Batchelor AH, Piper DE, de la Brousse FC, ''et al.'' |title=The structure of GABPalpha/beta: an ETS domain- ankyrin repeat heterodimer bound to DNA. |journal=Science |volume=279 |issue= 5353 |pages= 1037-41 |year= 1998 |pmid= 9461436 |doi= }}
* {{cite journal | vauthors = Bannert N, Avots A, Baier M, Serfling E, Kurth R | title = GA-binding protein factors, in concert with the coactivator CREB binding protein/p300, control the induction of the interleukin 16 promoter in T lymphocytes | journal = Proceedings of the National Academy of Sciences of the United States of America | volume = 96 | issue = 4 | pages = 1541–6 | date = Feb 1999 | pmid = 9990060 | pmc = 15509 | doi = 10.1073/pnas.96.4.1541 }}
*{{cite journal | author=Suzuki F, Goto M, Sawa C, ''et al.'' |title=Functional interactions of transcription factor human GA-binding protein subunits. |journal=J. Biol. Chem. |volume=273 |issue= 45 |pages= 29302-8 |year= 1998 |pmid= 9792629 |doi= }}
* {{cite journal | vauthors = Sawada J, Simizu N, Suzuki F, Sawa C, Goto M, Hasegawa M, Imai T, Watanabe H, Handa H | title = Synergistic transcriptional activation by hGABP and select members of the activation transcription factor/cAMP response element-binding protein family | journal = The Journal of Biological Chemistry | volume = 274 | issue = 50 | pages = 35475–82 | date = Dec 1999 | pmid = 10585419 | doi = 10.1074/jbc.274.50.35475 }}
*{{cite journal | author=Itoh K, Wakabayashi N, Katoh Y, ''et al.'' |title=Keap1 represses nuclear activation of antioxidant responsive elements by Nrf2 through binding to the amino-terminal Neh2 domain. |journal=Genes Dev. |volume=13 |issue= 1 |pages= 76-86 |year= 1999 |pmid= 9887101 |doi= }}
* {{cite journal | vauthors = Guo A, Nie F, Wong-Riley M | title = Human nuclear respiratory factor 2 alpha subunit cDNA: isolation, subcloning, sequencing, and in situ hybridization of transcripts in normal and monocularly deprived macaque visual system | journal = The Journal of Comparative Neurology | volume = 417 | issue = 2 | pages = 221–32 | date = Feb 2000 | pmid = 10660899 | doi = 10.1002/(SICI)1096-9861(20000207)417:2<221::AID-CNE7>3.0.CO;2-4 }}
*{{cite journal | author=Bannert N, Avots A, Baier M, ''et al.'' |title=GA-binding protein factors, in concert with the coactivator CREB binding protein/p300, control the induction of the interleukin 16 promoter in T lymphocytes. |journal=Proc. Natl. Acad. Sci. U.S.A. |volume=96 |issue= 4 |pages= 1541-6 |year= 1999 |pmid= 9990060 |doi= }}
* {{cite journal | vauthors = Vogel JL, Kristie TM | title = The novel coactivator C1 (HCF) coordinates multiprotein enhancer formation and mediates transcription activation by GABP | journal = The EMBO Journal | volume = 19 | issue = 4 | pages = 683–90 | date = Feb 2000 | pmid = 10675337 | pmc = 305606 | doi = 10.1093/emboj/19.4.683 }}
*{{cite journal | author=Sawada J, Simizu N, Suzuki F, ''et al.'' |title=Synergistic transcriptional activation by hGABP and select members of the activation transcription factor/cAMP response element-binding protein family. |journal=J. Biol. Chem. |volume=274 |issue= 50 |pages= 35475-82 |year= 2000 |pmid= 10585419 |doi= }}
* {{cite journal | vauthors = Hattori M, Fujiyama A, Taylor TD, Watanabe H, Yada T, Park HS, Toyoda A, Ishii K, Totoki Y, Choi DK, Groner Y, Soeda E, Ohki M, Takagi T, Sakaki Y, Taudien S, Blechschmidt K, Polley A, Menzel U, Delabar J, Kumpf K, Lehmann R, Patterson D, Reichwald K, Rump A, Schillhabel M, Schudy A, Zimmermann W, Rosenthal A, Kudoh J, Schibuya K, Kawasaki K, Asakawa S, Shintani A, Sasaki T, Nagamine K, Mitsuyama S, Antonarakis SE, Minoshima S, Shimizu N, Nordsiek G, Hornischer K, Brant P, Scharfe M, Schon O, Desario A, Reichelt J, Kauer G, Blocker H, Ramser J, Beck A, Klages S, Hennig S, Riesselmann L, Dagand E, Haaf T, Wehrmeyer S, Borzym K, Gardiner K, Nizetic D, Francis F, Lehrach H, Reinhardt R, Yaspo ML | title = The DNA sequence of human chromosome 21 | journal = Nature | volume = 405 | issue = 6784 | pages = 311–9 | date = May 2000 | pmid = 10830953 | doi = 10.1038/35012518 }}
*{{cite journal | author=Guo A, Nie F, Wong-Riley M |title=Human nuclear respiratory factor 2 alpha subunit cDNA: isolation, subcloning, sequencing, and in situ hybridization of transcripts in normal and monocularly deprived macaque visual system. |journal=J. Comp. Neurol. |volume=417 |issue= 2 |pages= 221-32 |year= 2000 |pmid= 10660899 |doi= }}
* {{cite journal | vauthors = Galvagni F, Capo S, Oliviero S | title = Sp1 and Sp3 physically interact and co-operate with GABP for the activation of the utrophin promoter | journal = Journal of Molecular Biology | volume = 306 | issue = 5 | pages = 985–96 | date = Mar 2001 | pmid = 11237613 | doi = 10.1006/jmbi.2000.4335 }}
*{{cite journal | author=Vogel JL, Kristie TM |title=The novel coactivator C1 (HCF) coordinates multiprotein enhancer formation and mediates transcription activation by GABP. |journal=EMBO J. |volume=19 |issue= 4 |pages= 683-90 |year= 2000 |pmid= 10675337 |doi= 10.1093/emboj/19.4.683 }}
* {{cite journal | vauthors = Dhakshinamoorthy S, Porter AG | title = Nitric oxide-induced transcriptional up-regulation of protective genes by Nrf2 via the antioxidant response element counteracts apoptosis of neuroblastoma cells | journal = The Journal of Biological Chemistry | volume = 279 | issue = 19 | pages = 20096–107 | date = May 2004 | pmid = 14985350 | doi = 10.1074/jbc.M312492200 }}
*{{cite journal  | author=Hattori M, Fujiyama A, Taylor TD, ''et al.'' |title=The DNA sequence of human chromosome 21. |journal=Nature |volume=405 |issue= 6784 |pages= 311-9 |year= 2000 |pmid= 10830953 |doi= 10.1038/35012518 }}
* {{cite journal | vauthors = Shen G, Hebbar V, Nair S, Xu C, Li W, Lin W, Keum YS, Han J, Gallo MA, Kong AN | title = Regulation of Nrf2 transactivation domain activity. The differential effects of mitogen-activated protein kinase cascades and synergistic stimulatory effect of Raf and CREB-binding protein | journal = The Journal of Biological Chemistry | volume = 279 | issue = 22 | pages = 23052–60 | date = May 2004 | pmid = 15020583 | doi = 10.1074/jbc.M401368200 }}
*{{cite journal | author=Galvagni F, Capo S, Oliviero S |title=Sp1 and Sp3 physically interact and co-operate with GABP for the activation of the utrophin promoter. |journal=J. Mol. Biol. |volume=306 |issue= 5 |pages= 985-96 |year= 2001 |pmid= 11237613 |doi= 10.1006/jmbi.2000.4335 }}
*{{cite journal | author=Strausberg RL, Feingold EA, Grouse LH, ''et al.'' |title=Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. |journal=Proc. Natl. Acad. Sci. U.S.A. |volume=99 |issue= 26 |pages= 16899-903 |year= 2003 |pmid= 12477932 |doi= 10.1073/pnas.242603899 }}
*{{cite journal | author=Dhakshinamoorthy S, Porter AG |title=Nitric oxide-induced transcriptional up-regulation of protective genes by Nrf2 via the antioxidant response element counteracts apoptosis of neuroblastoma cells. |journal=J. Biol. Chem. |volume=279 |issue= 19 |pages= 20096-107 |year= 2004 |pmid= 14985350 |doi= 10.1074/jbc.M312492200 }}
*{{cite journal | author=Shen G, Hebbar V, Nair S, ''et al.'' |title=Regulation of Nrf2 transactivation domain activity. The differential effects of mitogen-activated protein kinase cascades and synergistic stimulatory effect of Raf and CREB-binding protein. |journal=J. Biol. Chem. |volume=279 |issue= 22 |pages= 23052-60 |year= 2004 |pmid= 15020583 |doi= 10.1074/jbc.M401368200 }}
}}
{{refend}}
{{refend}}
== External links ==
* {{FactorBook|GABP}}
{{PDB Gallery|geneid=2551}}
{{Transcription factors|g1}}
{{DEFAULTSORT:Gabpa}}
[[Category:Transcription factors]]


{{gene-21-stub}}
{{gene-21-stub}}
{{Transcription factors}}
[[Category:Transcription factors]]
{{WikiDoc Sources}}

Latest revision as of 08:35, 31 August 2017

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Identifiers
Aliases
External IDsGeneCards: [1]
Orthologs
SpeciesHumanMouse
Entrez

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Ensembl

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UniProt

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RefSeq (mRNA)

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RefSeq (protein)

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Location (UCSC)n/an/a
PubMed searchn/an/a
Wikidata
View/Edit Human

GA-binding protein alpha chain is a protein that in humans is encoded by the GABPA gene.[1]

Function

This gene encodes one of three GA-binding protein transcription factor subunits which functions as a DNA-binding subunit. Since this subunit shares identity with a subunit encoding the nuclear respiratory factor 2 gene, it is likely involved in activation of cytochrome oxidase expression and nuclear control of mitochondrial function. This subunit also shares identity with a subunit constituting the transcription factor E4TF1, responsible for expression of the adenovirus E4 gene. Because of its chromosomal localization and ability to form heterodimers with other polypeptides, this gene may play a role in the Down Syndrome phenotype.[2]

Interactions

GABPA has been shown to interact with Host cell factor C1,[3] Sp1 transcription factor[4] and Sp3 transcription factor.[4]

References

  1. ↑ Watanabe H, Sawada J, Yano K, Yamaguchi K, Goto M, Handa H (Mar 1993). "cDNA cloning of transcription factor E4TF1 subunits with Ets and notch motifs". Molecular and Cellular Biology. 13 (3): 1385–91. PMC 359448. PMID 8441384.
  2. ↑ "Entrez Gene: GABPA GA binding protein transcription factor, alpha subunit 60kDa".
  3. ↑ Vogel JL, Kristie TM (Feb 2000). "The novel coactivator C1 (HCF) coordinates multiprotein enhancer formation and mediates transcription activation by GABP". The EMBO Journal. 19 (4): 683–90. doi:10.1093/emboj/19.4.683. PMC 305606. PMID 10675337.
  4. ↑ 4.0 4.1 Galvagni F, Capo S, Oliviero S (Mar 2001). "Sp1 and Sp3 physically interact and co-operate with GABP for the activation of the utrophin promoter". Journal of Molecular Biology. 306 (5): 985–96. doi:10.1006/jmbi.2000.4335. PMID 11237613.

Further reading

External links


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